Wall clock time and date at job start Tue Mar 31 2020 03:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00161 * 2 1 4 4 H 1.48505 * 109.47251 * 240.00298 * 3 2 1 5 5 H 1.48506 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47537 * 120.00154 * 3 2 1 7 7 C 1.38810 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99966 * 190.27628 * 7 2 1 9 9 N 1.36934 * 119.99854 * 10.27524 * 7 2 1 10 10 C 1.46926 * 120.63290 * 32.61742 * 9 7 2 11 11 C 1.53185 * 108.89566 * 126.34067 * 10 9 7 12 12 C 1.53356 * 109.14869 * 54.57888 * 11 10 9 13 13 C 1.53034 * 109.60630 * 298.71459 * 12 11 10 14 14 C 1.46930 * 120.63222 * 212.64145 * 9 7 2 15 15 H 1.09000 * 109.59060 * 113.80067 * 14 9 7 16 16 C 1.53005 * 109.58625 * 353.37189 * 14 9 7 17 17 N 1.46502 * 109.46940 * 60.11438 * 16 14 9 18 18 C 1.34774 * 119.99746 * 180.02562 * 17 16 14 19 19 O 1.21277 * 119.99913 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.99897 * 180.02562 * 18 17 16 21 21 H 1.08999 * 110.21268 * 318.06393 * 20 18 17 22 22 C 1.54473 * 110.24859 * 79.99512 * 20 18 17 23 23 C 1.54633 * 101.76609 * 93.58553 * 22 20 18 24 24 C 1.51282 * 104.19435 * 24.79733 * 23 22 20 25 25 O 1.21275 * 124.94013 * 163.78469 * 24 23 22 26 26 N 1.34416 * 110.11472 * 343.75013 * 24 23 22 27 27 H 0.97005 * 119.99672 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.58747 * 246.20534 * 10 9 7 29 29 H 1.09002 * 109.58653 * 6.48019 * 10 9 7 30 30 H 1.09005 * 109.49749 * 174.65831 * 11 10 9 31 31 H 1.09001 * 109.50065 * 294.75317 * 11 10 9 32 32 H 1.09000 * 109.41600 * 178.67022 * 12 11 10 33 33 H 1.09006 * 109.41714 * 58.75199 * 12 11 10 34 34 H 1.09003 * 109.49759 * 301.41570 * 13 12 11 35 35 H 1.08999 * 109.49320 * 181.32833 * 13 12 11 36 36 H 1.08999 * 109.47146 * 180.11823 * 16 14 9 37 37 H 1.09003 * 109.46540 * 300.11770 * 16 14 9 38 38 H 0.97000 * 119.99901 * 0.02562 * 17 16 14 39 39 H 1.09003 * 110.96993 * 211.70251 * 22 20 18 40 40 H 1.09004 * 110.97290 * 335.46693 * 22 20 18 41 41 H 1.09000 * 110.48676 * 143.47141 * 23 22 20 42 42 H 1.09002 * 110.48515 * 265.98658 * 23 22 20 43 43 H 0.97008 * 124.35401 * 179.61621 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0773 -1.2096 0.1663 9 7 1.3421 -2.3784 -0.2126 10 6 0.1673 -2.4237 -1.0938 11 6 0.3827 -3.5097 -2.1524 12 6 0.6995 -4.8376 -1.4535 13 6 1.9853 -4.6938 -0.6363 14 6 1.7860 -3.6192 0.4371 15 1 1.0297 -3.9498 1.1490 16 6 3.1079 -3.3716 1.1667 17 7 2.9178 -2.3336 2.1829 18 6 3.9536 -1.9478 2.9540 19 8 5.0429 -2.4603 2.8070 20 6 3.7580 -0.8804 3.9997 21 1 3.1399 -0.0744 3.6041 22 6 3.1057 -1.4833 5.2635 23 6 4.3435 -1.8220 6.1262 24 6 5.4125 -0.8737 5.6296 25 8 6.4414 -0.6173 6.2182 26 7 5.0564 -0.3574 4.4408 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7211 -2.6567 -0.5067 29 1 0.0393 -1.4576 -1.5821 30 1 -0.5209 -3.6171 -2.7525 31 1 1.2165 -3.2300 -2.7962 32 1 0.8304 -5.6189 -2.2023 33 1 -0.1241 -5.1039 -0.7909 34 1 2.8041 -4.4031 -1.2945 35 1 2.2215 -5.6450 -0.1595 36 1 3.4365 -4.2937 1.6462 37 1 3.8624 -3.0454 0.4508 38 1 2.0465 -1.9239 2.3006 39 1 2.4713 -0.7506 5.7624 40 1 2.5418 -2.3837 5.0198 41 1 4.1343 -1.6424 7.1807 42 1 4.6462 -2.8573 5.9691 43 1 5.5893 0.2789 3.9385 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024363945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:37 Heat of formation + Delta-G solvation = -55.884445 kcal Electronic energy + Delta-G solvation = -25176.784420 eV Core-core repulsion = 21643.041827 eV Total energy + Delta-G solvation = -3533.742592 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65162 -38.86033 -37.72892 -35.95940 -34.24839 -33.15639 -31.39344 -30.87505 -29.99974 -28.21079 -25.93887 -24.72452 -22.67724 -22.18415 -20.82787 -20.50025 -19.92032 -19.17427 -17.53746 -17.32693 -16.38485 -15.72054 -15.64338 -15.17084 -14.56461 -14.42362 -14.11411 -13.89569 -13.57503 -13.44186 -13.36371 -13.15505 -12.90216 -12.68979 -12.49673 -12.10477 -11.89983 -11.45714 -11.31523 -11.25638 -11.01140 -10.87590 -10.65092 -10.37591 -10.22986 -10.06997 -10.00504 -9.81050 -9.59939 -9.47448 -8.82239 -8.68709 -8.33903 -6.73163 -5.93933 -3.43467 2.63815 2.94382 3.20794 3.28976 3.30966 3.33867 3.80868 4.31556 4.34152 4.44130 4.78657 5.02611 5.14813 5.22134 5.27142 5.42758 5.45387 5.57626 5.58455 5.62257 5.72123 5.82460 5.90478 5.97536 6.08004 6.22455 6.30574 6.34444 6.53123 6.64414 6.67648 6.76978 6.79497 6.90020 7.04935 7.07631 7.31928 7.59648 7.67630 8.09916 8.30620 8.32105 8.70526 9.06484 9.67210 10.26596 11.12202 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.005453 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.303054 B = 5133.466929 C = 6291.457020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.009 3.991 3 Si 0.895 3.105 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.161 3.839 15 H 0.033 0.967 16 C 0.135 3.865 17 N -0.687 5.687 18 C 0.494 3.506 19 O -0.552 6.552 20 C 0.109 3.891 21 H 0.117 0.883 22 C -0.118 4.118 23 C -0.156 4.156 24 C 0.528 3.472 25 O -0.542 6.542 26 N -0.705 5.705 27 H 0.255 0.745 28 H 0.018 0.982 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.416 0.584 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -5.215 5.233 7.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.725 3.275 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.338 5.338 18 C 0.277 3.723 19 O -0.431 6.431 20 C 0.000 4.000 21 H 0.134 0.866 22 C -0.157 4.157 23 C -0.196 4.196 24 C 0.315 3.685 25 O -0.419 6.419 26 N -0.359 5.359 27 H 0.066 0.934 28 H 0.037 0.963 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.254 0.746 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.404 -5.368 5.508 7.702 hybrid contribution 0.144 1.405 -0.591 1.531 sum 0.548 -3.963 4.917 6.339 Atomic orbital electron populations 1.69964 1.05104 1.25671 1.53508 1.25134 0.95252 0.98030 1.00621 0.86514 0.78924 0.83751 0.78354 1.21027 1.21562 1.20933 1.19134 0.91056 0.83588 1.44413 0.91476 1.44047 1.33062 1.03301 1.50822 1.20769 0.88060 0.96937 0.89463 1.22260 0.99844 0.96813 0.99511 1.21412 0.97361 0.97398 0.98332 1.21941 0.98075 0.98115 0.98619 1.20739 0.92943 0.88649 0.92307 0.94960 1.21300 0.98333 0.89427 0.89852 1.45993 1.13392 1.39815 1.34615 1.20717 0.84968 0.83911 0.82694 1.90675 1.25365 1.56592 1.70494 1.21623 0.85907 0.97182 0.95324 0.86567 1.22578 0.97073 1.02686 0.93332 1.22339 0.94527 1.01029 1.01688 1.20785 0.86713 0.80171 0.80860 1.90725 1.26943 1.63130 1.61134 1.45871 1.22284 1.46024 1.21706 0.93437 0.96349 0.89649 0.93494 0.92892 0.93741 0.92863 0.92130 0.93033 0.92624 0.91616 0.74587 0.88690 0.88545 0.87857 0.87597 0.74801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.85 11.12 55.49 0.62 -22.24 16 2 C 0.01 0.22 5.05 -17.43 -0.09 0.13 16 3 Si 0.89 19.69 29.57 -169.99 -5.03 14.67 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.25 -5.84 6.91 -15.06 -0.10 -5.94 16 8 H 0.07 1.61 5.93 -52.49 -0.31 1.30 16 9 N -0.59 -12.51 2.97 -164.78 -0.49 -13.00 16 10 C 0.17 3.69 5.24 -3.71 -0.02 3.67 16 11 C -0.15 -2.56 6.11 -26.45 -0.16 -2.72 16 12 C -0.11 -1.66 5.89 -26.53 -0.16 -1.82 16 13 C -0.13 -2.02 5.37 -26.62 -0.14 -2.16 16 14 C 0.16 2.86 3.01 -67.60 -0.20 2.65 16 15 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 16 C 0.13 2.34 4.43 -4.04 -0.02 2.32 16 17 N -0.69 -11.55 3.86 -60.29 -0.23 -11.78 16 18 C 0.49 8.27 7.01 -10.99 -0.08 8.20 16 19 O -0.55 -11.14 16.56 5.56 0.09 -11.05 16 20 C 0.11 1.48 3.93 -68.17 -0.27 1.21 16 21 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 22 C -0.12 -1.21 6.69 -25.10 -0.17 -1.37 16 23 C -0.16 -1.76 6.85 -26.74 -0.18 -1.94 16 24 C 0.53 8.11 8.43 -10.86 -0.09 8.02 16 25 O -0.54 -10.26 18.03 5.56 0.10 -10.16 16 26 N -0.70 -10.24 5.45 -53.89 -0.29 -10.54 16 27 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 2.08 6.19 -51.93 -0.32 1.76 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.28 7.42 -51.93 -0.39 0.90 16 38 H 0.42 7.16 7.38 -40.82 -0.30 6.86 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.90 7.89 -51.93 -0.41 0.49 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.41 5.82 8.96 -40.82 -0.37 5.45 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -29.51 341.72 -8.49 -38.00 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.73 Total: 10.70 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -1.68 Total: 10.24 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.40 Total: -57.56 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.19 Total: -21.21 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.51 -8.49 -38.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024363945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.882 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds