Wall clock time and date at job start Tue Mar 31 2020 03:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00004 * 2 1 4 4 H 1.48502 * 109.46855 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47545 * 300.00212 * 3 2 1 6 6 H 1.48506 * 109.47107 * 60.00477 * 3 2 1 7 7 C 1.38809 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00087 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64732 * 355.60083 * 9 7 2 11 11 C 1.54916 * 104.82817 * 155.90947 * 10 9 7 12 12 C 1.55151 * 101.58111 * 37.01046 * 11 10 9 13 13 C 1.47023 * 125.64864 * 175.64675 * 9 7 2 14 14 H 1.08996 * 109.88329 * 300.59677 * 13 9 7 15 15 C 1.53006 * 109.87995 * 61.60513 * 13 9 7 16 16 H 1.09005 * 109.70224 * 302.01446 * 15 13 9 17 17 C 1.53183 * 109.58769 * 62.37454 * 15 13 9 18 18 C 1.53045 * 109.31309 * 174.42077 * 17 15 13 19 19 C 1.53040 * 109.53528 * 298.63280 * 18 17 15 20 20 C 1.53195 * 109.33826 * 61.35256 * 19 18 17 21 21 N 1.46929 * 108.77055 * 305.41034 * 20 19 18 22 22 C 1.34780 * 120.60830 * 233.53968 * 21 20 19 23 23 O 1.21340 * 120.00399 * 187.96749 * 22 21 20 24 24 C 1.49457 * 119.99649 * 7.95920 * 22 21 20 25 25 N 1.34775 * 120.00152 * 186.67039 * 24 22 21 26 26 O 1.21351 * 119.99935 * 6.67413 * 24 22 21 27 27 H 0.96999 * 119.99688 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.36757 * 274.74859 * 10 9 7 29 29 H 1.08999 * 110.36583 * 36.96609 * 10 9 7 30 30 H 1.08996 * 110.99896 * 155.08466 * 11 10 9 31 31 H 1.08999 * 111.00386 * 278.93533 * 11 10 9 32 32 H 1.08997 * 110.72095 * 206.13000 * 12 11 10 33 33 H 1.09006 * 110.71932 * 82.86261 * 12 11 10 34 34 H 1.09005 * 109.50219 * 54.46887 * 17 15 13 35 35 H 1.09003 * 109.50136 * 294.37373 * 17 15 13 36 36 H 1.09000 * 109.46192 * 178.61668 * 18 17 15 37 37 H 1.09002 * 109.46028 * 58.65303 * 18 17 15 38 38 H 1.09000 * 109.49366 * 181.31235 * 19 18 17 39 39 H 1.08992 * 109.50058 * 301.38071 * 19 18 17 40 40 H 1.08993 * 109.58654 * 65.16276 * 20 19 18 41 41 H 1.08999 * 109.58771 * 185.59112 * 20 19 18 42 42 H 0.97001 * 119.99571 * 0.02562 * 25 24 22 43 43 H 0.96993 * 120.00079 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1386 -2.5349 0.0919 11 6 -0.4407 -3.9101 -0.5542 12 6 0.7747 -4.7504 -0.0808 13 6 1.9286 -3.7258 -0.0918 14 1 2.4969 -3.8139 -1.0177 15 6 2.8481 -3.9648 1.1076 16 1 3.6188 -3.1945 1.1391 17 6 2.0274 -3.9233 2.4003 18 6 2.9244 -4.3000 3.5817 19 6 3.4520 -5.7237 3.3901 20 6 4.2888 -5.7864 2.1084 21 7 3.4780 -5.2870 0.9895 22 6 3.3154 -6.0280 -0.1245 23 8 2.7677 -5.5505 -1.0963 24 6 3.8100 -7.4378 -0.1630 25 7 3.7700 -8.1349 -1.3158 26 8 4.2477 -7.9550 0.8438 27 1 -0.4849 0.8401 0.0004 28 1 -0.4555 -2.5279 1.1348 29 1 -0.6354 -1.7372 -0.4603 30 1 -1.3741 -4.3241 -0.1730 31 1 -0.4637 -3.8344 -1.6413 32 1 0.9753 -5.5646 -0.7771 33 1 0.6094 -5.1344 0.9259 34 1 1.2018 -4.6316 2.3300 35 1 1.6331 -2.9180 2.5489 36 1 2.3488 -4.2474 4.5059 37 1 3.7632 -3.6061 3.6365 38 1 4.0719 -5.9998 4.2431 39 1 2.6131 -6.4151 3.3110 40 1 5.1771 -5.1650 2.2213 41 1 4.5840 -6.8176 1.9148 42 1 3.4204 -7.7213 -2.1206 43 1 4.0906 -9.0499 -1.3407 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025264054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:13 Heat of formation + Delta-G solvation = -19.570185 kcal Electronic energy + Delta-G solvation = -26176.551103 eV Core-core repulsion = 22644.383215 eV Total energy + Delta-G solvation = -3532.167888 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.34299 -40.29656 -38.71609 -38.16296 -34.87352 -34.52030 -33.66819 -32.52053 -31.13605 -28.78592 -26.96116 -26.37353 -25.00457 -23.96572 -22.26586 -21.64944 -21.40529 -20.12822 -19.04408 -18.48391 -18.04284 -17.28696 -17.09495 -16.50823 -16.26054 -16.10551 -15.80549 -15.50044 -15.28730 -14.88319 -14.70139 -14.51997 -14.24445 -13.82398 -13.46441 -13.25270 -13.10421 -12.83979 -12.77391 -12.64177 -12.34430 -12.01898 -11.91517 -11.85254 -11.69591 -11.40753 -11.25720 -11.17597 -11.00943 -10.80947 -10.67577 -9.86709 -9.51166 -8.74242 -7.68050 -5.14597 0.39456 1.45759 1.46538 1.49329 1.56750 2.18623 2.51526 2.73755 3.36032 3.52379 3.75971 3.88403 3.93014 4.01824 4.14231 4.23015 4.32376 4.35658 4.42897 4.58445 4.68020 4.76481 4.88041 4.96505 4.97721 5.05941 5.07153 5.19997 5.23337 5.23647 5.30937 5.47689 5.48829 5.52226 5.70687 5.74396 5.86781 5.90262 6.00931 6.34706 6.42504 6.87970 7.09121 7.18858 7.87277 8.52308 9.30032 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.019042 B = 0.005573 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.046757 B = 5022.832128 C = 5472.158808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.067 4.067 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.220 4.220 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.147 3.853 11 C -0.135 4.135 12 C -0.113 4.113 13 C 0.158 3.842 14 H 0.060 0.940 15 C 0.141 3.859 16 H 0.051 0.949 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.119 4.119 20 C 0.049 3.951 21 N -0.569 5.569 22 C 0.483 3.517 23 O -0.518 6.518 24 C 0.523 3.477 25 N -0.796 5.796 26 O -0.531 6.531 27 H 0.244 0.756 28 H -0.016 1.016 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.157 0.843 42 H 0.422 0.578 43 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 -17.827 2.166 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.802 3.198 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.350 4.350 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.022 3.978 11 C -0.174 4.174 12 C -0.151 4.151 13 C 0.051 3.949 14 H 0.077 0.923 15 C 0.036 3.964 16 H 0.069 0.931 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.071 4.071 21 N -0.303 5.303 22 C 0.267 3.733 23 O -0.396 6.396 24 C 0.302 3.698 25 N -0.362 5.362 26 O -0.411 6.411 27 H 0.054 0.946 28 H 0.002 0.998 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.173 0.827 42 H 0.254 0.746 43 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 7.550 -17.533 2.347 19.233 hybrid contribution 0.072 1.420 -0.237 1.442 sum 7.623 -16.113 2.111 17.949 Atomic orbital electron populations 1.69988 1.06053 1.24429 1.59324 1.25517 0.96471 1.00538 1.03385 0.85086 0.78058 0.80052 0.76646 1.19428 1.22082 1.22026 1.19339 0.90584 0.83781 1.41282 0.90835 1.44908 1.02663 1.00654 1.85147 1.21863 0.84843 0.95383 0.95684 1.22850 0.97980 0.96851 0.99691 1.22942 0.93959 0.97557 1.00606 1.21704 0.93701 0.84419 0.95034 0.92263 1.21859 0.94767 0.81994 0.97741 0.93137 1.21750 0.98146 1.01059 0.94081 1.21570 0.99121 0.97461 0.97433 1.21790 1.00168 0.95964 0.97748 1.23325 0.92830 1.05779 0.85215 1.48149 1.48455 1.17251 1.16401 1.20335 0.81689 0.87379 0.83932 1.90758 1.42070 1.71301 1.35445 1.20020 0.78321 0.86916 0.84513 1.43402 1.63605 1.18061 1.11147 1.90354 1.47157 1.70281 1.33260 0.94577 0.99837 0.90260 0.90662 0.92807 0.89190 0.92032 0.91934 0.93270 0.90944 0.92265 0.88463 0.92017 0.91653 0.82659 0.74585 0.74103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.30 10.03 21.65 0.22 -57.08 16 2 C -0.07 -3.85 5.48 84.86 0.47 -3.39 16 3 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.22 -12.48 9.82 84.03 0.83 -11.65 16 8 H 0.07 4.07 7.68 -2.91 -0.02 4.04 16 9 N -0.61 -31.84 2.61 -668.24 -1.75 -33.59 16 10 C 0.15 7.59 6.07 86.86 0.53 8.12 16 11 C -0.14 -5.57 7.09 31.99 0.23 -5.35 16 12 C -0.11 -4.32 4.93 31.78 0.16 -4.17 16 13 C 0.16 6.85 2.29 45.34 0.10 6.95 16 14 H 0.06 2.85 5.81 -11.28 -0.07 2.78 16 15 C 0.14 5.34 2.67 44.97 0.12 5.46 16 16 H 0.05 2.13 7.81 -2.38 -0.02 2.11 16 17 C -0.11 -4.01 4.96 30.67 0.15 -3.86 16 18 C -0.12 -3.23 5.88 30.62 0.18 -3.05 16 19 C -0.12 -2.70 6.08 30.67 0.19 -2.52 16 20 C 0.05 1.21 6.26 86.36 0.54 1.75 16 21 N -0.57 -17.41 2.94 -796.57 -2.34 -19.75 16 22 C 0.48 14.10 6.86 87.27 0.60 14.70 16 23 O -0.52 -17.34 9.91 -3.21 -0.03 -17.37 16 24 C 0.52 11.68 8.04 87.27 0.70 12.38 16 25 N -0.80 -11.00 8.87 -174.49 -1.55 -12.55 16 26 O -0.53 -13.05 13.95 -3.25 -0.05 -13.10 16 27 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 28 H -0.02 -0.89 8.14 -2.39 -0.02 -0.90 16 29 H 0.08 4.66 5.59 -2.39 -0.01 4.65 16 30 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.09 3.23 5.67 -2.40 -0.01 3.21 16 33 H 0.06 2.25 5.42 -2.38 -0.01 2.24 16 34 H 0.06 2.22 5.69 -2.38 -0.01 2.21 16 35 H 0.05 2.13 7.87 -2.39 -0.02 2.12 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.16 3.76 3.82 -76.51 -0.29 3.47 16 42 H 0.42 5.17 8.32 -92.71 -0.77 4.40 16 43 H 0.42 3.52 8.93 -92.71 -0.83 2.70 16 Total: -1.00 -68.55 321.69 0.45 -68.11 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -0.88 Total: 21.30 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 4.79 Total: 15.38 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -5.41 Total: -122.97 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.08 Total: -30.47 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -68.55 0.45 -68.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025264054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.536 kcal (2) G-P(sol) polarization free energy of solvation -68.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds