Wall clock time and date at job start Tue Mar 31 2020 03:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48501 * 109.46760 * 240.00175 * 3 2 1 5 5 H 1.48501 * 109.46734 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47250 * 119.99875 * 3 2 1 7 7 C 1.38810 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00242 * 179.97438 * 7 2 1 9 9 N 1.36947 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.47745 * 125.81941 * 346.89186 * 9 7 2 11 11 C 1.54908 * 104.83957 * 204.24769 * 10 9 7 12 12 C 1.55152 * 101.58627 * 322.91187 * 11 10 9 13 13 C 1.47022 * 125.64903 * 166.89607 * 9 7 2 14 14 H 1.08999 * 109.88227 * 59.32293 * 13 9 7 15 15 C 1.52995 * 109.88191 * 298.31281 * 13 9 7 16 16 N 1.46497 * 109.47231 * 176.58392 * 15 13 9 17 17 C 1.34771 * 120.00411 * 174.91880 * 16 15 13 18 18 O 1.21288 * 120.00017 * 0.02562 * 17 16 15 19 19 C 1.50708 * 120.00326 * 180.27802 * 17 16 15 20 20 H 1.08994 * 109.67017 * 60.22523 * 19 17 16 21 21 C 1.53347 * 109.67056 * 180.75683 * 19 17 16 22 22 C 1.52909 * 108.67955 * 187.25119 * 21 19 17 23 23 N 1.45758 * 110.49653 * 309.27395 * 22 21 19 24 24 C 1.33350 * 124.10691 * 19.04659 * 23 22 21 25 25 O 1.21273 * 118.24900 * 177.77500 * 24 23 22 26 26 C 1.50183 * 123.50732 * 357.78763 * 24 23 22 27 27 H 0.97002 * 119.99908 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.43291 * 85.37719 * 10 9 7 29 29 H 1.08995 * 110.29535 * 323.06043 * 10 9 7 30 30 H 1.08998 * 111.00662 * 204.83433 * 11 10 9 31 31 H 1.09007 * 111.00181 * 80.98778 * 11 10 9 32 32 H 1.09003 * 110.72240 * 277.13986 * 12 11 10 33 33 H 1.08996 * 110.87635 * 153.93405 * 12 11 10 34 34 H 1.09006 * 109.47514 * 56.58592 * 15 13 9 35 35 H 1.08998 * 109.47469 * 296.58707 * 15 13 9 36 36 H 0.97004 * 120.00351 * 354.92047 * 16 15 13 37 37 H 1.08992 * 109.60791 * 307.02064 * 21 19 17 38 38 H 1.08999 * 109.60215 * 67.51541 * 21 19 17 39 39 H 1.09006 * 109.30414 * 188.95837 * 22 21 19 40 40 H 1.08988 * 109.11820 * 69.48042 * 22 21 19 41 41 H 0.96998 * 117.94891 * 199.06005 * 23 22 21 42 42 H 1.08994 * 109.40165 * 257.45518 * 26 24 23 43 43 H 1.09004 * 109.32346 * 137.66916 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1174 -2.5535 0.2717 11 6 -0.2639 -4.0154 0.7627 12 6 0.7706 -4.7493 -0.1309 13 6 1.9048 -3.7121 -0.2698 14 1 2.6933 -3.9260 0.4518 15 6 2.4744 -3.7508 -1.6893 16 7 3.1210 -5.0448 -1.9209 17 6 3.6067 -5.3466 -3.1412 18 8 3.5088 -4.5468 -4.0477 19 6 4.2663 -6.6803 -3.3811 20 1 3.5560 -7.4823 -3.1806 21 6 4.7450 -6.7653 -4.8355 22 6 5.2442 -8.1853 -5.1046 23 7 6.1932 -8.5959 -4.0773 24 6 6.2994 -8.0143 -2.8820 25 8 7.0989 -8.4689 -2.0915 26 6 5.4818 -6.8266 -2.4623 27 1 -0.4850 0.8401 0.0004 28 1 -0.6959 -2.3995 -0.6392 29 1 -0.4383 -1.8586 1.0478 30 1 -1.2716 -4.3893 0.5815 31 1 -0.0005 -4.1017 1.8169 32 1 0.3413 -4.9839 -1.1049 33 1 1.1330 -5.6539 0.3573 34 1 3.2066 -2.9522 -1.8090 35 1 1.6670 -3.6142 -2.4086 36 1 3.1997 -5.6844 -1.1959 37 1 3.9179 -6.5349 -5.5068 38 1 5.5572 -6.0561 -4.9951 39 1 5.7319 -8.2173 -6.0789 40 1 4.3949 -8.8683 -5.1042 41 1 6.7847 -9.3387 -4.2755 42 1 6.0929 -5.9262 -2.5240 43 1 5.1445 -6.9656 -1.4351 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027814644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:40 Heat of formation + Delta-G solvation = -60.756223 kcal Electronic energy + Delta-G solvation = -24143.435961 eV Core-core repulsion = 20609.482113 eV Total energy + Delta-G solvation = -3533.953849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82803 -39.36678 -37.70452 -36.48513 -34.35550 -33.41516 -32.48562 -30.06144 -29.63637 -28.66868 -25.81276 -24.79267 -23.99840 -22.86953 -20.52974 -20.11875 -19.58344 -19.40166 -17.80811 -17.16066 -16.55654 -16.46790 -15.84597 -15.58825 -15.06499 -14.88364 -14.47574 -14.31352 -14.06434 -13.77262 -13.67911 -13.42923 -12.90941 -12.18143 -12.09294 -12.00951 -11.91619 -11.77904 -11.39483 -11.36796 -11.33293 -10.97260 -10.79307 -10.41007 -10.28120 -10.14788 -9.96565 -9.86392 -9.73521 -9.50903 -9.43519 -8.73755 -8.60889 -6.88037 -5.78384 -3.15158 2.34755 2.70932 2.95819 3.28503 3.40133 3.44345 3.45276 4.18672 4.32247 4.39813 4.44783 4.49034 4.91830 4.93381 4.97181 5.18987 5.30251 5.35624 5.37479 5.44988 5.50285 5.59153 5.64099 5.77445 5.85388 6.01976 6.09652 6.20570 6.41897 6.42437 6.50170 6.57709 6.65785 6.76626 6.97438 7.01556 7.49411 7.56618 7.69463 7.76586 7.89541 8.22613 8.37651 9.14519 9.75515 10.42393 11.33224 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.003399 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.451798 B = 8235.156646 C = 8701.916029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.151 3.849 14 H 0.037 0.963 15 C 0.108 3.892 16 N -0.720 5.720 17 C 0.512 3.488 18 O -0.538 6.538 19 C -0.112 4.112 20 H 0.104 0.896 21 C -0.118 4.118 22 C 0.109 3.891 23 N -0.721 5.721 24 C 0.525 3.475 25 O -0.556 6.556 26 C -0.127 4.127 27 H 0.254 0.746 28 H 0.025 0.975 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.396 0.604 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.399 0.601 42 H 0.108 0.892 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.064 -17.816 -7.300 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.314 5.314 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.017 4.017 16 N -0.371 5.371 17 C 0.297 3.703 18 O -0.415 6.415 19 C -0.134 4.134 20 H 0.122 0.878 21 C -0.156 4.156 22 C -0.015 4.015 23 N -0.374 5.374 24 C 0.312 3.688 25 O -0.435 6.435 26 C -0.168 4.168 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.229 0.771 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.235 0.765 42 H 0.126 0.874 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.150 -16.970 -7.462 19.532 hybrid contribution 0.610 0.357 0.059 0.709 sum 6.759 -16.613 -7.403 19.403 Atomic orbital electron populations 1.69923 1.05019 1.25437 1.55868 1.24889 0.95680 0.97854 1.01406 0.86218 0.78589 0.83043 0.78043 1.20956 1.21537 1.21046 1.18944 0.90370 0.82188 1.44783 0.90645 1.44558 1.05465 1.00619 1.80714 1.21541 0.84567 0.90401 0.98889 1.23001 0.97419 0.99544 0.98753 1.22603 0.97061 0.96950 0.99786 1.21126 0.94404 0.88064 0.92136 0.94498 1.22274 0.97066 0.82750 0.99624 1.46175 1.59298 1.20183 1.11428 1.20301 0.78853 0.88182 0.82999 1.90729 1.57456 1.50414 1.42917 1.21473 0.97534 0.97294 0.97067 0.87770 1.21727 1.02998 0.95632 0.95279 1.21465 0.92682 0.96312 0.91025 1.45504 1.39893 1.36651 1.15306 1.20033 0.83109 0.84482 0.81200 1.90779 1.38226 1.63938 1.50521 1.21670 0.96115 0.97797 1.01172 0.93534 0.95715 0.90632 0.92337 0.92269 0.91884 0.92390 0.91457 0.91564 0.77084 0.88481 0.90137 0.90015 0.91299 0.76547 0.87421 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.40 10.54 55.49 0.58 -25.82 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.13 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.34 9.75 -15.06 -0.15 -6.49 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -14.35 3.14 -162.32 -0.51 -14.85 16 10 C 0.17 3.99 5.46 -2.35 -0.01 3.98 16 11 C -0.15 -2.65 7.08 -24.59 -0.17 -2.82 16 12 C -0.13 -2.01 6.14 -24.90 -0.15 -2.16 16 13 C 0.15 2.87 3.20 -66.96 -0.21 2.66 16 14 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 15 C 0.11 1.97 5.08 -4.05 -0.02 1.95 16 16 N -0.72 -9.71 5.25 -60.29 -0.32 -10.03 16 17 C 0.51 6.89 7.13 -10.98 -0.08 6.81 16 18 O -0.54 -9.62 15.89 5.55 0.09 -9.54 16 19 C -0.11 -1.00 2.60 -91.55 -0.24 -1.24 16 20 H 0.10 0.74 8.13 -51.93 -0.42 0.31 16 21 C -0.12 -0.94 4.71 -26.60 -0.13 -1.06 16 22 C 0.11 0.59 7.17 -4.49 -0.03 0.55 16 23 N -0.72 -5.30 5.45 -61.39 -0.33 -5.64 16 24 C 0.52 5.45 7.71 -11.87 -0.09 5.36 16 25 O -0.56 -8.09 17.78 5.56 0.10 -7.99 16 26 C -0.13 -1.16 5.19 -28.10 -0.15 -1.31 16 27 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 28 H 0.02 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.08 1.98 6.83 -51.93 -0.35 1.62 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.99 7.80 -51.93 -0.40 0.59 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.42 7.89 -51.93 -0.41 1.01 16 35 H 0.07 1.37 8.06 -51.93 -0.42 0.95 16 36 H 0.40 4.17 8.07 -40.82 -0.33 3.84 16 37 H 0.10 0.81 7.89 -51.93 -0.41 0.40 16 38 H 0.08 0.73 8.12 -51.93 -0.42 0.30 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.29 8.14 -51.94 -0.42 -0.13 16 41 H 0.40 2.50 8.80 -40.82 -0.36 2.14 16 42 H 0.11 1.05 8.09 -51.93 -0.42 0.62 16 43 H 0.11 0.88 7.93 -51.93 -0.41 0.47 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -34.06 346.32 -8.59 -42.65 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.86 Total: 2.98 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -1.53 Total: 6.12 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.58 Total: -56.34 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.19 Total: -17.52 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.06 -8.59 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027814644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.107 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds