Wall clock time and date at job start Tue Mar 31 2020 03:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00430 * 2 1 4 4 H 1.48500 * 109.47198 * 240.00242 * 3 2 1 5 5 H 1.48508 * 109.46945 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47350 * 120.00003 * 3 2 1 7 7 C 1.38817 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99714 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99830 * 359.97438 * 7 2 1 10 10 C 1.47746 * 125.82219 * 346.89355 * 9 7 2 11 11 C 1.54908 * 104.84173 * 204.25207 * 10 9 7 12 12 C 1.55154 * 101.58127 * 322.90608 * 11 10 9 13 13 C 1.47020 * 125.64856 * 166.90093 * 9 7 2 14 14 H 1.08996 * 109.88709 * 59.32168 * 13 9 7 15 15 C 1.53003 * 109.88136 * 298.30842 * 13 9 7 16 16 N 1.46496 * 109.46985 * 176.58351 * 15 13 9 17 17 C 1.34776 * 119.99826 * 174.94385 * 16 15 13 18 18 O 1.21283 * 120.00333 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00092 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.59651 * 300.32638 * 19 17 16 21 21 C 1.53341 * 109.60124 * 180.02562 * 19 17 16 22 22 C 1.53070 * 108.42172 * 172.71285 * 21 19 17 23 23 C 1.50168 * 109.89383 * 48.90045 * 22 21 19 24 24 O 1.21284 * 118.25055 * 162.44172 * 23 22 21 25 25 N 1.33353 * 123.50761 * 342.41698 * 23 22 21 26 26 C 1.45755 * 124.10512 * 2.22165 * 25 23 22 27 27 H 0.97005 * 119.99408 * 0.02562 * 1 2 3 28 28 H 1.09003 * 110.43449 * 85.37319 * 10 9 7 29 29 H 1.08992 * 110.29459 * 323.06126 * 10 9 7 30 30 H 1.09007 * 111.00392 * 204.83234 * 11 10 9 31 31 H 1.09001 * 111.00264 * 80.98513 * 11 10 9 32 32 H 1.09002 * 110.72596 * 277.13784 * 12 11 10 33 33 H 1.09005 * 110.86873 * 153.93376 * 12 11 10 34 34 H 1.09002 * 109.46727 * 56.58830 * 15 13 9 35 35 H 1.08997 * 109.47377 * 296.59086 * 15 13 9 36 36 H 0.96998 * 120.00476 * 354.67463 * 16 15 13 37 37 H 1.08996 * 109.67484 * 292.44623 * 21 19 17 38 38 H 1.09000 * 109.67797 * 52.94218 * 21 19 17 39 39 H 1.09007 * 109.40201 * 169.03070 * 22 21 19 40 40 H 1.09003 * 109.40399 * 288.85259 * 22 21 19 41 41 H 0.97004 * 117.94637 * 182.22577 * 25 23 22 42 42 H 1.09006 * 109.29847 * 220.60854 * 26 25 23 43 43 H 1.09005 * 109.30048 * 101.23891 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1172 -2.5535 0.2716 11 6 -0.2633 -4.0156 0.7622 12 6 0.7705 -4.7491 -0.1325 13 6 1.9047 -3.7119 -0.2718 14 1 2.6936 -3.9262 0.4490 15 6 2.4732 -3.7500 -1.6918 16 7 3.1196 -5.0439 -1.9243 17 6 3.6048 -5.3450 -3.1452 18 8 3.5066 -4.5447 -4.0511 19 6 4.2693 -6.6763 -3.3846 20 1 5.1296 -6.7797 -2.7233 21 6 4.7294 -6.7664 -4.8446 22 6 5.5575 -8.0427 -5.0129 23 6 4.8245 -9.2098 -4.4165 24 8 5.1675 -10.3280 -4.7376 25 7 3.8170 -9.0826 -3.5523 26 6 3.2718 -7.8035 -3.1151 27 1 -0.4849 0.8401 -0.0004 28 1 -0.6964 -2.3992 -0.6388 29 1 -0.4375 -1.8591 1.0482 30 1 -1.2712 -4.3895 0.5816 31 1 0.0009 -4.1023 1.8161 32 1 0.3404 -4.9834 -1.1063 33 1 1.1333 -5.6540 0.3551 34 1 3.2053 -2.9514 -1.8116 35 1 1.6652 -3.6131 -2.4105 36 1 3.2020 -5.6824 -1.1988 37 1 3.8605 -6.8034 -5.5015 38 1 5.3393 -5.8974 -5.0915 39 1 5.7284 -8.2262 -6.0737 40 1 6.5157 -7.9220 -4.5075 41 1 3.4222 -9.8921 -3.1919 42 1 3.0589 -7.8487 -2.0470 43 1 2.3466 -7.6026 -3.6554 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027987566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:30 Heat of formation + Delta-G solvation = -86.541313 kcal Electronic energy + Delta-G solvation = -24116.143521 eV Core-core repulsion = 20581.071547 eV Total energy + Delta-G solvation = -3535.071974 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.66917 -40.50707 -39.25234 -37.27166 -35.76949 -34.38681 -33.97537 -31.74765 -31.18173 -29.85509 -26.72902 -25.90955 -25.49461 -23.93856 -22.05472 -21.58539 -21.16543 -20.10497 -18.98140 -18.47916 -17.65638 -17.37550 -17.01298 -16.57474 -16.41999 -16.25253 -15.73152 -15.59923 -15.17981 -14.99073 -14.67931 -14.48414 -14.16129 -13.90244 -13.62836 -13.37008 -12.97424 -12.95728 -12.86206 -12.78877 -12.63657 -12.23434 -12.05954 -11.99877 -11.82730 -11.68302 -11.44916 -11.35792 -10.90956 -10.83208 -10.67044 -10.13637 -10.02942 -8.85247 -7.87050 -5.23960 1.45090 1.48033 1.53507 1.57524 1.62126 2.11106 2.34246 2.51037 3.32480 3.49198 3.54825 3.69108 3.72040 3.82021 3.99580 4.03390 4.23815 4.27207 4.32569 4.40965 4.50088 4.57015 4.58679 4.75171 4.77826 4.88055 5.01345 5.02520 5.04946 5.18589 5.19770 5.26192 5.40683 5.49558 5.61510 5.69226 5.80367 5.81876 6.24454 6.27246 6.62040 7.09805 7.18397 7.30882 7.78109 8.43562 9.23342 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.025083 B = 0.003283 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.018369 B = 8525.782579 C = 9383.743142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.970 3.030 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.238 4.238 8 H 0.078 0.922 9 N -0.613 5.613 10 C 0.171 3.829 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.147 3.853 14 H 0.053 0.947 15 C 0.128 3.872 16 N -0.703 5.703 17 C 0.517 3.483 18 O -0.585 6.585 19 C -0.114 4.114 20 H 0.135 0.865 21 C -0.102 4.102 22 C -0.127 4.127 23 C 0.516 3.484 24 O -0.607 6.607 25 N -0.705 5.705 26 C 0.121 3.879 27 H 0.247 0.753 28 H -0.010 1.010 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.031 0.969 35 H 0.037 0.963 36 H 0.417 0.583 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.409 0.591 42 H 0.120 0.880 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.821 -18.496 -2.044 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.255 4.255 3 Si 0.799 3.201 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.367 4.367 8 H 0.096 0.904 9 N -0.337 5.337 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.149 4.149 13 C 0.039 3.961 14 H 0.071 0.929 15 C 0.001 3.999 16 N -0.356 5.356 17 C 0.304 3.696 18 O -0.465 6.465 19 C -0.135 4.135 20 H 0.153 0.847 21 C -0.140 4.140 22 C -0.166 4.166 23 C 0.305 3.695 24 O -0.489 6.489 25 N -0.356 5.356 26 C -0.003 4.003 27 H 0.056 0.944 28 H 0.008 0.992 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.255 0.745 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.139 0.861 41 H 0.246 0.754 42 H 0.138 0.862 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.942 -18.033 -2.891 19.538 hybrid contribution -0.077 1.212 0.164 1.226 sum 6.865 -16.821 -2.726 18.371 Atomic orbital electron populations 1.70131 1.06271 1.25353 1.57718 1.25647 0.96479 1.00953 1.02397 0.85282 0.77321 0.79351 0.78184 1.20845 1.22161 1.19938 1.19271 0.90766 0.83651 1.43030 0.90404 1.44822 1.05943 1.01931 1.81014 1.21353 0.84004 0.93771 0.96291 1.22864 0.99670 0.95232 0.99526 1.22611 0.94807 0.97342 1.00119 1.21367 0.96003 0.86491 0.92196 0.92926 1.21666 0.95381 0.84247 0.98560 1.45861 1.58665 1.18776 1.12261 1.20856 0.77825 0.88962 0.82004 1.90737 1.58665 1.52448 1.44613 1.21623 1.00586 0.90680 1.00658 0.84741 1.21443 1.00610 0.97671 0.94313 1.21659 1.00107 0.90907 1.03966 1.20608 0.79957 0.90864 0.78083 1.90754 1.67372 1.28402 1.62410 1.45350 1.34943 1.10370 1.44985 1.21429 0.95133 0.80756 1.03014 0.94402 0.99222 0.94546 0.90039 0.91233 0.91422 0.87229 0.95039 0.94500 0.74495 0.91552 0.90021 0.87340 0.86114 0.75404 0.86158 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.26 10.54 21.65 0.23 -56.03 16 2 C -0.06 -3.43 5.47 84.86 0.46 -2.97 16 3 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.24 -12.85 9.75 84.04 0.82 -12.03 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.61 -29.30 3.14 -667.45 -2.09 -31.40 16 10 C 0.17 7.97 5.46 86.79 0.47 8.44 16 11 C -0.13 -4.27 7.08 31.98 0.23 -4.05 16 12 C -0.11 -2.88 6.15 31.78 0.20 -2.69 16 13 C 0.15 5.04 3.20 45.34 0.15 5.18 16 14 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 15 C 0.13 4.40 5.08 86.38 0.44 4.84 16 16 N -0.70 -15.49 5.25 -463.06 -2.43 -17.92 16 17 C 0.52 12.10 7.13 87.66 0.63 12.73 16 18 O -0.59 -20.38 15.89 -3.04 -0.05 -20.43 16 19 C -0.11 -1.53 2.60 -11.45 -0.03 -1.56 16 20 H 0.13 1.17 8.12 -2.39 -0.02 1.15 16 21 C -0.10 -1.59 4.71 30.73 0.14 -1.44 16 22 C -0.13 -1.71 6.03 29.70 0.18 -1.53 16 23 C 0.52 9.24 7.71 87.71 0.68 9.92 16 24 O -0.61 -16.38 17.78 -3.04 -0.05 -16.43 16 25 N -0.71 -8.48 5.45 -467.32 -2.55 -11.03 16 26 C 0.12 1.13 6.33 86.49 0.55 1.67 16 27 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 28 H -0.01 -0.54 8.10 -2.39 -0.02 -0.56 16 29 H 0.04 1.95 6.83 -2.39 -0.02 1.93 16 30 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 1.74 7.80 -2.39 -0.02 1.72 16 33 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.03 1.30 7.89 -2.39 -0.02 1.28 16 35 H 0.04 1.49 8.06 -2.39 -0.02 1.47 16 36 H 0.42 5.54 8.05 -92.71 -0.75 4.79 16 37 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 38 H 0.08 1.44 7.90 -2.39 -0.02 1.42 16 39 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.41 4.08 8.80 -92.71 -0.82 3.26 16 42 H 0.12 0.37 7.89 -2.38 -0.02 0.35 16 43 H 0.07 0.80 8.11 -2.38 -0.02 0.78 16 Total: -1.00 -79.01 346.31 -0.55 -79.56 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -0.54 Total: 9.61 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 4.91 Total: 16.52 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -6.84 Total: -116.37 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.10 Total: -36.86 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -79.01 -0.55 -79.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027987566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.981 kcal (2) G-P(sol) polarization free energy of solvation -79.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds