Wall clock time and date at job start Tue Mar 31 2020 03:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 119.99988 * 2 1 4 4 H 1.48500 * 109.47475 * 269.99436 * 3 2 1 5 5 H 1.48497 * 109.47479 * 29.99517 * 3 2 1 6 6 H 1.48506 * 109.47341 * 149.99670 * 3 2 1 7 7 C 1.38812 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99575 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00374 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64493 * 359.95363 * 9 7 2 11 11 C 1.55120 * 104.94296 * 204.03874 * 10 9 7 12 12 C 1.55158 * 101.48579 * 323.22372 * 11 10 9 13 13 H 1.09002 * 110.71736 * 276.82839 * 12 11 10 14 14 C 1.52996 * 110.72035 * 153.73393 * 12 11 10 15 15 N 1.46497 * 109.47393 * 177.44153 * 14 12 11 16 16 C 1.34779 * 120.00132 * 179.97438 * 15 14 12 17 17 O 1.21277 * 119.99981 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99688 * 180.02562 * 16 15 14 19 19 H 1.09001 * 109.39747 * 300.16890 * 18 16 15 20 20 C 1.53070 * 109.32945 * 180.38842 * 18 16 15 21 21 C 1.53344 * 108.42534 * 191.01381 * 20 18 16 22 22 C 1.52925 * 108.67454 * 67.52837 * 21 20 18 23 23 N 1.45759 * 110.48545 * 309.24863 * 22 21 20 24 24 C 1.33354 * 124.10773 * 19.07159 * 23 22 21 25 25 O 1.21279 * 118.24212 * 177.80171 * 24 23 22 26 26 C 1.47019 * 125.65131 * 179.97438 * 9 7 2 27 27 H 0.97003 * 120.00247 * 0.02562 * 1 2 3 28 28 H 1.09004 * 110.37199 * 323.00411 * 10 9 7 29 29 H 1.09007 * 110.36874 * 85.21682 * 10 9 7 30 30 H 1.09007 * 111.16505 * 205.13036 * 11 10 9 31 31 H 1.09001 * 110.93538 * 81.21754 * 11 10 9 32 32 H 1.09004 * 109.47223 * 57.43540 * 14 12 11 33 33 H 1.08999 * 109.47302 * 297.44321 * 14 12 11 34 34 H 0.97005 * 119.99539 * 359.97438 * 15 14 12 35 35 H 1.09000 * 109.67304 * 310.74333 * 20 18 16 36 36 H 1.08991 * 109.67813 * 71.23924 * 20 18 16 37 37 H 1.08995 * 109.60609 * 187.28178 * 21 20 18 38 38 H 1.08996 * 109.59961 * 307.60948 * 21 20 18 39 39 H 1.08996 * 109.30022 * 188.93651 * 22 21 20 40 40 H 1.08995 * 109.30243 * 69.55511 * 22 21 20 41 41 H 0.97004 * 117.94538 * 199.36000 * 23 22 21 42 42 H 1.08995 * 109.88059 * 59.48745 * 26 9 7 43 43 H 1.09003 * 109.88112 * 298.31757 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0010 11 6 -0.4046 -3.9348 0.6113 12 6 0.7785 -4.7524 0.0290 13 1 0.5477 -5.1010 -0.9777 14 6 1.1234 -5.9307 0.9419 15 7 2.2009 -6.7178 0.3373 16 6 2.6725 -7.8114 0.9685 17 8 2.2045 -8.1440 2.0367 18 6 3.7813 -8.6207 0.3467 19 1 3.4567 -8.9931 -0.6249 20 6 4.1175 -9.8036 1.2581 21 6 5.4156 -10.4481 0.7568 22 6 6.5676 -9.4679 0.9817 23 7 6.2350 -8.1567 0.4388 24 6 4.9934 -7.7522 0.1686 25 8 4.8346 -6.6226 -0.2434 26 6 1.9318 -3.7275 0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5992 -1.7584 0.6162 29 1 -0.5278 -2.4855 -1.0173 30 1 -1.3604 -4.3371 0.2755 31 1 -0.3577 -3.9006 1.6998 32 1 0.2427 -6.5597 1.0718 33 1 1.4481 -5.5555 1.9124 34 1 2.5749 -6.4520 -0.5173 35 1 4.2537 -9.4519 2.2808 36 1 3.3086 -10.5334 1.2258 37 1 5.6047 -11.3678 1.3103 38 1 5.3255 -10.6727 -0.3060 39 1 7.4633 -9.8454 0.4886 40 1 6.7597 -9.3769 2.0508 41 1 6.9629 -7.5411 0.2591 42 1 2.5588 -3.8505 0.8836 43 1 2.5277 -3.8647 -0.9019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028609512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:51 Heat of formation + Delta-G solvation = -82.401033 kcal Electronic energy + Delta-G solvation = -24240.733399 eV Core-core repulsion = 20705.840961 eV Total energy + Delta-G solvation = -3534.892438 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97109 -40.20344 -39.22225 -37.55959 -36.02634 -34.38963 -34.00935 -31.75528 -30.93306 -29.75738 -27.44770 -26.15870 -24.76941 -23.76706 -22.33000 -21.61139 -21.21655 -20.04885 -18.97510 -18.53021 -18.06271 -17.66994 -17.07965 -16.78516 -16.52747 -16.08071 -15.65762 -15.55989 -15.21144 -14.83005 -14.75342 -14.36004 -14.31650 -14.08522 -13.57684 -13.39660 -13.16845 -12.98178 -12.81455 -12.70146 -12.40936 -12.24680 -12.03052 -11.93650 -11.91225 -11.86044 -11.61494 -11.40962 -11.02965 -10.82093 -10.76115 -10.10069 -10.06233 -8.90956 -7.79769 -5.24318 1.24921 1.43681 1.46302 1.55290 1.59270 2.19483 2.35053 2.47719 3.28829 3.44794 3.50213 3.61241 3.72977 3.82266 3.87590 3.95428 4.03449 4.18779 4.25439 4.42994 4.52435 4.63329 4.66568 4.74515 4.77831 4.85701 4.88229 5.04196 5.06832 5.09494 5.11070 5.31257 5.34580 5.41726 5.45555 5.64094 5.77283 5.80130 6.22020 6.29702 6.48836 7.07988 7.09499 7.16005 7.76165 8.40234 9.22131 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.023352 B = 0.003394 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.733385 B = 8248.545935 C = 9210.028643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.066 4.066 3 Si 0.982 3.018 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.628 5.628 10 C 0.152 3.848 11 C -0.120 4.120 12 C -0.094 4.094 13 H 0.095 0.905 14 C 0.142 3.858 15 N -0.707 5.707 16 C 0.521 3.479 17 O -0.574 6.574 18 C -0.120 4.120 19 H 0.157 0.843 20 C -0.103 4.103 21 C -0.130 4.130 22 C 0.099 3.901 23 N -0.708 5.708 24 C 0.520 3.480 25 O -0.585 6.585 26 C 0.144 3.856 27 H 0.249 0.751 28 H 0.073 0.927 29 H -0.008 1.008 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.412 0.588 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.406 0.594 42 H 0.010 0.990 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.973 -26.158 -0.191 28.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.354 5.354 10 C 0.027 3.973 11 C -0.159 4.159 12 C -0.113 4.113 13 H 0.114 0.886 14 C 0.018 3.982 15 N -0.358 5.358 16 C 0.307 3.693 17 O -0.454 6.454 18 C -0.144 4.144 19 H 0.175 0.825 20 C -0.141 4.141 21 C -0.167 4.167 22 C -0.024 4.024 23 N -0.358 5.358 24 C 0.305 3.695 25 O -0.466 6.466 26 C 0.019 3.981 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.009 0.991 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.249 0.751 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.092 0.908 41 H 0.243 0.757 42 H 0.028 0.972 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.368 -25.764 0.412 27.775 hybrid contribution 0.774 1.774 -0.493 1.998 sum 11.142 -23.989 -0.081 26.451 Atomic orbital electron populations 1.70047 1.06107 1.25135 1.58398 1.25648 0.96750 1.00946 1.02494 0.85023 0.77511 0.78872 0.77578 1.21092 1.21473 1.19784 1.19429 0.90838 0.84063 1.42989 0.90884 1.44840 1.02997 1.00807 1.86790 1.21790 0.83751 0.94963 0.96749 1.22894 0.97659 0.95350 1.00015 1.22283 0.95635 0.93384 1.00021 0.88647 1.21242 0.90145 0.91399 0.95395 1.46133 1.37511 1.26748 1.25423 1.20436 0.83409 0.80892 0.84598 1.90680 1.61317 1.70670 1.22768 1.21527 0.91216 0.96585 1.05063 0.82539 1.21545 0.99928 0.94709 0.97924 1.21947 0.91891 0.99075 1.03803 1.21778 0.99756 0.80971 0.99907 1.45448 1.07088 1.19116 1.64184 1.19856 0.85642 0.86975 0.76985 1.90824 1.86149 1.21498 1.48137 1.21380 0.94673 0.85064 0.96995 0.94169 0.90869 0.99051 0.88632 0.91884 0.89709 0.93491 0.75060 0.91958 0.88999 0.86665 0.89455 0.87220 0.90836 0.75748 0.97206 0.96473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.36 10.09 21.65 0.22 -58.15 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 3 Si 0.98 47.71 29.55 68.60 2.03 49.74 16 4 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.24 -14.71 10.27 84.03 0.86 -13.85 16 8 H 0.07 4.31 7.83 -2.91 -0.02 4.28 16 9 N -0.63 -34.93 3.40 -691.56 -2.35 -37.28 16 10 C 0.15 7.86 5.89 86.93 0.51 8.37 16 11 C -0.12 -4.61 6.55 32.06 0.21 -4.40 16 12 C -0.09 -3.35 2.98 -9.61 -0.03 -3.38 16 13 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 14 C 0.14 4.52 5.00 86.38 0.43 4.95 16 15 N -0.71 -20.77 4.92 -463.07 -2.28 -23.05 16 16 C 0.52 14.58 7.06 87.66 0.62 15.20 16 17 O -0.57 -19.43 15.78 -3.02 -0.05 -19.48 16 18 C -0.12 -2.25 2.78 -12.43 -0.03 -2.29 16 19 H 0.16 2.01 8.14 -2.39 -0.02 2.00 16 20 C -0.10 -1.39 4.78 30.73 0.15 -1.24 16 21 C -0.13 -0.72 6.02 30.68 0.18 -0.53 16 22 C 0.10 0.64 7.17 86.49 0.62 1.26 16 23 N -0.71 -10.32 5.45 -467.32 -2.55 -12.87 16 24 C 0.52 11.51 7.28 87.71 0.64 12.14 16 25 O -0.59 -18.50 15.57 -3.03 -0.05 -18.54 16 26 C 0.14 6.61 6.64 86.73 0.58 7.19 16 27 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 28 H 0.07 4.27 5.87 -2.38 -0.01 4.26 16 29 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 30 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 31 H 0.06 2.42 8.05 -2.39 -0.02 2.40 16 32 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.05 1.70 8.01 -2.39 -0.02 1.69 16 34 H 0.41 11.87 7.07 -92.70 -0.66 11.22 16 35 H 0.06 1.12 7.71 -2.39 -0.02 1.10 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.09 0.33 8.12 -2.39 -0.02 0.31 16 39 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.41 5.58 8.80 -92.71 -0.82 4.76 16 42 H 0.01 0.48 7.73 -2.39 -0.02 0.46 16 43 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -80.36 342.90 -0.26 -80.62 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -0.45 Total: 19.02 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 5.20 Total: 19.99 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -6.95 Total: -131.34 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.09 Total: -38.03 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -80.36 -0.26 -80.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028609512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.780 kcal (2) G-P(sol) polarization free energy of solvation -80.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds