Wall clock time and date at job start Tue Mar 31 2020 03:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99995 * 2 1 4 4 H 1.48503 * 109.47099 * 274.73649 * 3 2 1 5 5 H 1.48498 * 109.47533 * 34.73580 * 3 2 1 6 6 H 1.48499 * 109.46977 * 154.73893 * 3 2 1 7 7 C 1.38820 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99391 * 196.56048 * 7 2 1 9 9 N 1.36936 * 120.00152 * 16.57193 * 7 2 1 10 10 C 1.44572 * 118.64146 * 207.01816 * 9 7 2 11 11 C 1.54863 * 109.60158 * 270.72301 * 10 9 7 12 12 C 1.47096 * 110.32041 * 288.73796 * 11 10 9 13 13 C 1.52565 * 114.33043 * 62.79841 * 12 11 10 14 14 C 1.50879 * 109.37775 * 274.97691 * 13 12 11 15 15 H 1.09004 * 109.36491 * 331.70776 * 14 13 12 16 16 N 1.46491 * 109.36828 * 212.08822 * 14 13 12 17 17 C 1.34776 * 120.00633 * 155.00137 * 16 14 13 18 18 O 1.21291 * 119.99456 * 359.97438 * 17 16 14 19 19 C 1.50700 * 120.00550 * 180.02562 * 17 16 14 20 20 H 1.08997 * 110.21418 * 318.06466 * 19 17 16 21 21 C 1.54478 * 110.24619 * 79.99898 * 19 17 16 22 22 C 1.54627 * 101.76456 * 93.58406 * 21 19 17 23 23 C 1.51278 * 104.19640 * 24.79656 * 22 21 19 24 24 O 1.21284 * 124.94083 * 163.70645 * 23 22 21 25 25 N 1.34416 * 110.11857 * 343.74913 * 23 22 21 26 26 C 1.47607 * 118.64509 * 27.03243 * 9 7 2 27 27 H 0.96998 * 120.00108 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.45118 * 150.68143 * 10 9 7 29 29 H 1.09001 * 109.44998 * 30.75978 * 10 9 7 30 30 H 1.08995 * 109.33089 * 168.47421 * 11 10 9 31 31 H 1.09003 * 109.32975 * 48.99090 * 11 10 9 32 32 H 1.09006 * 108.50817 * 301.54400 * 12 11 10 33 33 H 1.08998 * 108.51179 * 184.05605 * 12 11 10 34 34 H 1.08999 * 109.48600 * 34.95053 * 13 12 11 35 35 H 1.08995 * 109.49235 * 154.99894 * 13 12 11 36 36 H 0.97005 * 119.99966 * 335.00000 * 16 14 13 37 37 H 1.08999 * 110.96828 * 211.70705 * 21 19 17 38 38 H 1.09007 * 110.96604 * 335.42708 * 21 19 17 39 39 H 1.09003 * 110.48027 * 143.47809 * 22 21 19 40 40 H 1.08993 * 110.48598 * 266.11809 * 22 21 19 41 41 H 0.96999 * 124.35709 * 179.59038 * 25 23 22 42 42 H 1.08995 * 108.95129 * 258.55830 * 26 9 7 43 43 H 1.09005 * 108.94441 * 17.27824 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3975 2.1042 -1.3953 5 1 1.5013 2.6217 0.7977 6 1 3.5942 1.4133 0.5975 7 6 2.0102 -1.2023 0.0005 8 1 3.0566 -1.2215 0.2672 9 7 1.3681 -2.3637 -0.3372 10 6 1.8594 -3.6102 0.2059 11 6 2.9321 -4.2025 -0.7410 12 6 2.3052 -4.7015 -1.9746 13 6 1.6169 -3.6260 -2.8095 14 6 0.2148 -3.4135 -2.2946 15 1 -0.1482 -4.3367 -1.8429 16 7 -0.6612 -3.0436 -3.4090 17 6 -1.9849 -3.2857 -3.3349 18 8 -2.4509 -3.8103 -2.3455 19 6 -2.8859 -2.9057 -4.4815 20 1 -2.6078 -1.9263 -4.8705 21 6 -2.8046 -3.9681 -5.6001 22 6 -3.9867 -4.8971 -5.2391 23 6 -4.9282 -4.0113 -4.4533 24 8 -6.0920 -4.2649 -4.2245 25 7 -4.2876 -2.9019 -4.0464 26 6 0.2033 -2.2912 -1.2409 27 1 -0.4850 0.8400 -0.0004 28 1 1.0330 -4.3143 0.3036 29 1 2.3003 -3.4303 1.1863 30 1 3.4433 -5.0235 -0.2384 31 1 3.6579 -3.4291 -0.9927 32 1 1.5665 -5.4569 -1.7062 33 1 3.0732 -5.1755 -2.5858 34 1 2.1770 -2.6938 -2.7347 35 1 1.5775 -3.9440 -3.8513 36 1 -0.2884 -2.6244 -4.2004 37 1 -2.9502 -3.5143 -6.5803 38 1 -1.8577 -4.5065 -5.5585 39 1 -4.4732 -5.2641 -6.1429 40 1 -3.6439 -5.7294 -4.6245 41 1 -4.6988 -2.1902 -3.5313 42 1 -0.7089 -2.3705 -0.6496 43 1 0.2110 -1.3283 -1.7517 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034130289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:55 Heat of formation + Delta-G solvation = -51.147284 kcal Electronic energy + Delta-G solvation = -24967.887176 eV Core-core repulsion = 21434.350002 eV Total energy + Delta-G solvation = -3533.537174 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.84786 -39.12371 -37.70221 -36.08304 -34.47243 -33.58940 -31.50626 -30.84741 -30.35741 -27.97027 -26.04872 -24.34493 -23.54292 -22.52267 -20.72401 -20.40946 -19.91488 -19.29272 -17.53861 -17.47446 -16.68256 -15.93093 -15.48121 -15.31174 -15.01181 -14.47301 -14.07199 -14.03920 -13.73869 -13.60955 -13.31657 -13.25836 -12.87923 -12.82212 -12.47956 -12.14030 -11.70206 -11.51400 -11.38414 -11.17291 -11.04017 -10.76559 -10.48953 -10.29190 -10.21709 -10.11226 -10.00213 -9.92198 -9.83719 -9.55505 -8.98524 -8.63309 -8.42787 -6.68408 -5.80722 -3.25815 2.50144 2.75045 3.10321 3.32459 3.40957 3.42370 3.53775 4.16200 4.23233 4.46108 4.54718 4.77241 4.97581 5.15451 5.21648 5.28441 5.40090 5.41441 5.51477 5.58224 5.63503 5.65283 5.86118 5.97284 6.14582 6.28702 6.43275 6.55249 6.60228 6.61093 6.64732 6.72417 6.84916 6.92188 6.93677 7.06686 7.31188 7.68415 7.78346 7.81291 8.17350 8.42642 8.47511 9.20194 9.87228 10.32877 11.25657 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.004561 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.093660 B = 6137.027208 C = 7112.311228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.006 3.994 3 Si 0.899 3.101 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.154 3.846 11 C -0.147 4.147 12 C -0.098 4.098 13 C -0.115 4.115 14 C 0.119 3.881 15 H 0.073 0.927 16 N -0.713 5.713 17 C 0.496 3.504 18 O -0.524 6.524 19 C 0.112 3.888 20 H 0.113 0.887 21 C -0.120 4.120 22 C -0.157 4.157 23 C 0.528 3.472 24 O -0.537 6.537 25 N -0.706 5.706 26 C 0.175 3.825 27 H 0.253 0.747 28 H 0.032 0.968 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.396 0.604 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.416 0.584 42 H 0.031 0.969 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 -7.215 -13.990 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.729 3.271 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.308 5.308 10 C 0.026 3.974 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.014 3.986 15 H 0.091 0.909 16 N -0.364 5.364 17 C 0.279 3.721 18 O -0.399 6.399 19 C 0.001 3.999 20 H 0.131 0.869 21 C -0.158 4.158 22 C -0.197 4.197 23 C 0.314 3.686 24 O -0.413 6.413 25 N -0.360 5.360 26 C 0.049 3.951 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.229 0.771 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.255 0.745 42 H 0.049 0.951 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.030 -7.702 -13.171 15.293 hybrid contribution 0.618 1.581 -0.058 1.699 sum -0.412 -6.121 -13.230 14.583 Atomic orbital electron populations 1.70106 1.05192 1.25361 1.53684 1.25062 0.95200 0.98377 1.00691 0.86327 0.79293 0.83976 0.77507 1.21572 1.21818 1.20349 1.19221 0.92722 0.85017 1.42030 0.91570 1.43525 1.34180 1.02055 1.51041 1.20739 0.94042 0.88183 0.94432 1.21496 1.00303 0.99751 0.97240 1.20216 0.99062 0.97410 0.96943 1.21272 0.95626 1.00902 0.97480 1.21796 0.88374 1.00714 0.87698 0.90900 1.46139 1.07048 1.62538 1.20720 1.20806 0.83137 0.79554 0.88630 1.90755 1.74690 1.42197 1.32299 1.21607 0.82495 1.02149 0.93603 0.86912 1.22587 0.99988 0.95652 0.97544 1.22349 0.96191 0.99159 1.01989 1.20777 0.87202 0.81777 0.78829 1.90748 1.16705 1.74672 1.59221 1.45871 1.10085 1.23216 1.56875 1.21280 0.89576 0.95009 0.89242 0.93721 0.94975 0.93543 0.93425 0.92065 0.93274 0.93685 0.90044 0.93050 0.77086 0.88695 0.88605 0.87746 0.87491 0.74511 0.95090 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 11.11 55.49 0.62 -25.04 16 2 C 0.01 0.15 4.84 -17.43 -0.08 0.07 16 3 Si 0.90 21.06 29.58 -169.99 -5.03 16.03 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.26 -6.84 9.43 -15.06 -0.14 -6.98 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.01 2.27 -172.09 -0.39 -14.40 16 10 C 0.15 3.16 5.65 -4.09 -0.02 3.13 16 11 C -0.15 -2.47 5.74 -28.58 -0.16 -2.64 16 12 C -0.10 -1.47 5.15 -29.79 -0.15 -1.63 16 13 C -0.11 -1.76 5.06 -28.02 -0.14 -1.90 16 14 C 0.12 2.09 2.27 -68.51 -0.16 1.94 16 15 H 0.07 1.41 6.75 -51.93 -0.35 1.06 16 16 N -0.71 -9.95 4.98 -54.37 -0.27 -10.22 16 17 C 0.50 7.34 6.97 -10.99 -0.08 7.27 16 18 O -0.52 -10.47 16.22 5.55 0.09 -10.38 16 19 C 0.11 1.14 3.93 -68.16 -0.27 0.88 16 20 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.12 -0.86 6.69 -25.10 -0.17 -1.03 16 22 C -0.16 -1.49 6.85 -26.74 -0.18 -1.67 16 23 C 0.53 7.29 8.43 -10.86 -0.09 7.20 16 24 O -0.54 -9.59 18.03 5.55 0.10 -9.49 16 25 N -0.71 -8.79 5.45 -53.88 -0.29 -9.08 16 26 C 0.18 4.03 4.25 -2.94 -0.01 4.02 16 27 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.05 0.97 7.99 -51.93 -0.41 0.56 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.73 7.36 -51.93 -0.38 0.35 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.44 7.48 -51.93 -0.39 1.05 16 35 H 0.05 0.63 7.94 -51.93 -0.41 0.22 16 36 H 0.40 4.13 8.54 -40.82 -0.35 3.78 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.60 7.89 -51.92 -0.41 0.19 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.42 5.09 8.96 -40.82 -0.37 4.73 16 42 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 43 H 0.07 1.88 6.38 -51.93 -0.33 1.55 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -34.49 342.81 -8.42 -42.92 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.75 Total: 5.83 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -1.66 Total: 8.67 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.34 Total: -58.74 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.19 Total: -19.87 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.49 -8.42 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034130289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.232 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds