Wall clock time and date at job start Tue Mar 31 2020 03:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 120.00160 * 2 1 4 4 H 1.48497 * 109.47222 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47077 * 300.00469 * 3 2 1 6 6 H 1.48505 * 109.46640 * 59.99941 * 3 2 1 7 7 C 1.38816 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99750 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99897 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.65108 * 0.02903 * 9 7 2 11 11 C 1.54327 * 107.27221 * 178.89168 * 10 9 7 12 12 C 1.55159 * 102.94009 * 337.81083 * 11 10 9 13 13 H 1.09005 * 111.00173 * 277.38432 * 12 11 10 14 14 C 1.52998 * 111.00384 * 153.57856 * 12 11 10 15 15 H 1.09004 * 109.58881 * 186.92592 * 14 12 11 16 16 C 1.53191 * 109.70143 * 307.27897 * 14 12 11 17 17 C 1.53047 * 109.31273 * 174.49286 * 16 14 12 18 18 C 1.53042 * 109.53585 * 298.63353 * 17 16 14 19 19 C 1.53192 * 109.30952 * 61.36744 * 18 17 16 20 20 N 1.46925 * 108.77741 * 305.35846 * 19 18 17 21 21 C 1.34777 * 120.63242 * 233.63416 * 20 19 18 22 22 O 1.21344 * 119.99988 * 187.91211 * 21 20 19 23 23 C 1.49446 * 120.00003 * 7.91242 * 21 20 19 24 24 N 1.34775 * 120.00132 * 186.68410 * 23 21 20 25 25 O 1.21351 * 120.00189 * 6.68437 * 23 21 20 26 26 C 1.47426 * 125.64562 * 179.97438 * 9 7 2 27 27 H 0.96997 * 119.99997 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.87716 * 59.47716 * 10 9 7 29 29 H 1.08997 * 110.01484 * 298.38127 * 10 9 7 30 30 H 1.08998 * 110.72058 * 219.44653 * 11 10 9 31 31 H 1.08997 * 110.71662 * 96.17023 * 11 10 9 32 32 H 1.08999 * 109.49706 * 294.44415 * 16 14 12 33 33 H 1.09001 * 109.49701 * 54.54089 * 16 14 12 34 34 H 1.08998 * 109.45880 * 178.61372 * 17 16 14 35 35 H 1.08993 * 109.44751 * 58.65268 * 17 16 14 36 36 H 1.08993 * 109.49700 * 301.41577 * 18 17 16 37 37 H 1.08998 * 109.52162 * 181.33175 * 18 17 16 38 38 H 1.09001 * 109.57941 * 185.57619 * 19 18 17 39 39 H 1.09000 * 109.58724 * 65.15233 * 19 18 17 40 40 H 0.97006 * 119.99596 * 359.97438 * 24 23 21 41 41 H 0.96993 * 120.00548 * 180.02562 * 24 23 21 42 42 H 1.09000 * 110.36587 * 85.34208 * 26 9 7 43 43 H 1.09000 * 110.36937 * 323.01877 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0006 11 6 -0.4485 -4.0441 -0.0291 12 6 0.8519 -4.6554 -0.6145 13 1 0.8565 -4.5950 -1.7028 14 6 1.0369 -6.1007 -0.1477 15 1 2.0123 -6.4664 -0.4689 16 6 0.9416 -6.1662 1.3799 17 6 0.9900 -7.6289 1.8277 18 6 -0.2020 -8.3849 1.2364 19 6 -0.1195 -8.3445 -0.2927 20 7 -0.0195 -6.9436 -0.7241 21 6 -0.8807 -6.4411 -1.6309 22 8 -0.7027 -5.3305 -2.0863 23 6 -2.0548 -7.2517 -2.0756 24 7 -2.8391 -6.8082 -3.0780 25 8 -2.3021 -8.3092 -1.5343 26 6 1.9335 -3.7312 -0.0016 27 1 -0.4850 0.8400 0.0004 28 1 -0.5575 -2.0512 -0.8837 29 1 -0.5567 -2.0850 0.9004 30 1 -1.2985 -4.2507 -0.6793 31 1 -0.6316 -4.4191 0.9778 32 1 1.7777 -5.6230 1.8202 33 1 0.0033 -5.7169 1.7054 34 1 0.9471 -7.6771 2.9158 35 1 1.9174 -8.0842 1.4804 36 1 -1.1294 -7.9147 1.5633 37 1 -0.1804 -9.4209 1.5747 38 1 -1.0160 -8.7949 -0.7189 39 1 0.7614 -8.8932 -0.6258 40 1 -2.6416 -5.9627 -3.5105 41 1 -3.6013 -7.3341 -3.3664 42 1 2.1663 -4.0430 1.0166 43 1 2.8331 -3.7399 -0.6170 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039225278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:27 Heat of formation + Delta-G solvation = -26.304469 kcal Electronic energy + Delta-G solvation = -25667.187134 eV Core-core repulsion = 22134.727226 eV Total energy + Delta-G solvation = -3532.459908 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.34522 -40.30363 -38.72725 -38.26642 -34.95112 -34.76766 -33.65884 -32.56467 -30.65194 -28.96901 -27.39809 -26.15414 -25.05984 -24.02360 -22.18792 -21.74947 -21.38485 -20.16247 -18.97414 -18.53995 -18.06880 -17.12181 -16.93514 -16.87596 -16.33135 -16.17042 -15.80385 -15.52596 -15.35953 -14.85523 -14.82147 -14.33663 -14.13077 -13.93404 -13.81709 -13.40734 -13.23281 -12.88008 -12.77380 -12.50120 -12.17685 -12.00334 -11.97117 -11.74584 -11.67087 -11.56944 -11.43752 -11.19342 -11.01308 -10.76109 -10.68320 -9.78781 -9.54137 -8.83827 -7.82838 -5.18528 0.38215 1.44090 1.46273 1.47619 1.56811 2.17776 2.50044 2.71667 3.34313 3.47016 3.66538 3.78733 3.89094 4.02883 4.09774 4.22838 4.30430 4.34370 4.42906 4.57484 4.68605 4.72540 4.85738 4.94950 4.98097 5.02086 5.09293 5.15168 5.20625 5.25990 5.29938 5.43363 5.46546 5.52340 5.65763 5.75475 5.80669 5.86470 5.97964 6.21206 6.31109 6.86725 7.07573 7.11719 7.80480 8.47115 9.28124 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.004638 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.148683 B = 6035.958910 C = 6922.666041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.084 0.916 9 N -0.626 5.626 10 C 0.195 3.805 11 C -0.119 4.119 12 C -0.086 4.086 13 H 0.096 0.904 14 C 0.162 3.838 15 H 0.093 0.907 16 C -0.135 4.135 17 C -0.115 4.115 18 C -0.125 4.125 19 C 0.050 3.950 20 N -0.571 5.571 21 C 0.486 3.514 22 O -0.520 6.520 23 C 0.519 3.481 24 N -0.800 5.800 25 O -0.531 6.531 26 C 0.130 3.870 27 H 0.245 0.755 28 H 0.000 1.000 29 H -0.003 1.003 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.148 0.852 39 H 0.080 0.920 40 H 0.421 0.579 41 H 0.423 0.577 42 H 0.033 0.967 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 -21.484 -2.233 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.102 0.898 9 N -0.352 5.352 10 C 0.070 3.930 11 C -0.157 4.157 12 C -0.105 4.105 13 H 0.113 0.887 14 C 0.059 3.941 15 H 0.111 0.889 16 C -0.173 4.173 17 C -0.152 4.152 18 C -0.163 4.163 19 C -0.070 4.070 20 N -0.304 5.304 21 C 0.269 3.731 22 O -0.397 6.397 23 C 0.298 3.702 24 N -0.366 5.366 25 O -0.411 6.411 26 C 0.005 3.995 27 H 0.054 0.946 28 H 0.018 0.982 29 H 0.015 0.985 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.165 0.835 39 H 0.098 0.902 40 H 0.253 0.747 41 H 0.258 0.742 42 H 0.051 0.949 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.366 -21.334 -2.038 21.561 hybrid contribution -0.072 1.763 -0.230 1.779 sum -2.438 -19.571 -2.268 19.852 Atomic orbital electron populations 1.70257 1.06521 1.25019 1.58694 1.25717 0.96605 1.01219 1.02851 0.84967 0.78231 0.79216 0.76673 1.18704 1.21963 1.21866 1.19567 0.91068 0.83845 1.42473 0.89806 1.44769 1.02353 1.01255 1.86778 1.20748 0.83864 0.91917 0.96458 1.23063 0.98303 0.95035 0.99321 1.22733 0.94303 0.92106 1.01355 0.88654 1.21250 0.90326 0.88805 0.93694 0.88933 1.22106 1.02732 0.98565 0.93860 1.21550 0.99149 0.93469 1.01067 1.21830 0.98197 1.01865 0.94455 1.23302 1.07548 0.79588 0.96588 1.48050 1.29534 1.13223 1.39562 1.20294 0.84431 0.86579 0.81794 1.90838 1.73413 1.20113 1.55340 1.20167 0.84138 0.85092 0.80778 1.43472 1.30819 1.27227 1.35047 1.90365 1.71624 1.23667 1.55414 1.21931 0.95174 0.84845 0.97592 0.94590 0.98214 0.98520 0.91007 0.92183 0.90388 0.92504 0.90800 0.90405 0.93082 0.88547 0.83545 0.90201 0.74748 0.74209 0.94935 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.09 10.31 21.65 0.22 -60.86 16 2 C -0.07 -4.30 5.49 84.86 0.47 -3.83 16 3 Si 0.98 47.75 29.55 68.60 2.03 49.78 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 7 C -0.24 -14.25 10.28 84.03 0.86 -13.39 16 8 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16 9 N -0.63 -34.58 3.39 -691.99 -2.35 -36.93 16 10 C 0.20 10.71 5.37 86.73 0.47 11.18 16 11 C -0.12 -5.02 5.29 31.78 0.17 -4.85 16 12 C -0.09 -3.20 2.13 -9.40 -0.02 -3.22 16 13 H 0.10 3.97 5.84 -9.21 -0.05 3.92 16 14 C 0.16 4.46 2.81 44.97 0.13 4.58 16 15 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 16 C -0.13 -3.40 4.72 30.67 0.14 -3.25 16 17 C -0.11 -2.08 5.88 30.62 0.18 -1.90 16 18 C -0.13 -2.20 6.08 30.67 0.19 -2.02 16 19 C 0.05 0.97 6.26 86.36 0.54 1.51 16 20 N -0.57 -14.36 2.95 -796.60 -2.35 -16.71 16 21 C 0.49 13.41 6.83 87.27 0.60 14.00 16 22 O -0.52 -17.52 10.17 -3.23 -0.03 -17.55 16 23 C 0.52 11.66 8.04 87.27 0.70 12.36 16 24 N -0.80 -12.40 8.87 -174.50 -1.55 -13.95 16 25 O -0.53 -12.84 13.96 -3.25 -0.05 -12.89 16 26 C 0.13 5.60 6.61 86.85 0.57 6.17 16 27 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.00 -0.03 7.38 -2.39 -0.02 -0.04 16 29 H 0.00 -0.21 7.51 -2.39 -0.02 -0.23 16 30 H 0.07 3.00 5.59 -2.39 -0.01 2.98 16 31 H 0.06 2.38 5.48 -2.39 -0.01 2.37 16 32 H 0.08 2.04 6.44 -2.39 -0.02 2.02 16 33 H 0.06 1.66 5.73 -2.39 -0.01 1.65 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.15 3.10 3.82 -76.38 -0.29 2.81 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.42 6.27 8.32 -92.70 -0.77 5.50 16 41 H 0.42 4.24 8.93 -92.71 -0.83 3.41 16 42 H 0.03 1.33 5.99 -2.39 -0.01 1.31 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -75.46 320.48 0.06 -75.40 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -0.86 Total: 16.35 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 4.99 Total: 17.36 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -6.03 Total: -128.46 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.08 Total: -30.44 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -75.46 0.06 -75.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039225278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.100 kcal (2) G-P(sol) polarization free energy of solvation -75.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds