Wall clock time and date at job start Tue Mar 31 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00111 * 2 1 4 4 H 1.48497 * 109.47229 * 240.00084 * 3 2 1 5 5 H 1.48501 * 109.46833 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47125 * 119.99725 * 3 2 1 7 7 C 1.38812 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00525 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00570 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.90087 * 23.75165 * 10 9 7 12 12 C 1.53779 * 113.61432 * 154.99931 * 10 9 7 13 13 C 1.53787 * 87.07951 * 139.98436 * 12 10 9 14 14 H 1.08999 * 113.61234 * 89.19522 * 13 12 10 15 15 C 1.52998 * 113.61568 * 220.02038 * 13 12 10 16 16 N 1.46497 * 109.47317 * 185.00025 * 15 13 12 17 17 C 1.34776 * 120.00049 * 179.97438 * 16 15 13 18 18 O 1.21279 * 120.00163 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99862 * 179.97438 * 17 16 15 20 20 H 1.09002 * 109.29821 * 319.58538 * 19 17 16 21 21 C 1.52888 * 109.15064 * 79.01342 * 19 17 16 22 22 C 1.53348 * 108.69446 * 170.90159 * 21 19 17 23 23 C 1.53069 * 108.45717 * 292.54129 * 22 21 19 24 24 C 1.50181 * 109.89013 * 48.87742 * 23 22 21 25 25 O 1.21280 * 118.24048 * 162.39845 * 24 23 22 26 26 N 1.33349 * 123.50856 * 342.42146 * 24 23 22 27 27 C 1.53773 * 113.61592 * 252.50072 * 10 9 7 28 28 H 0.97001 * 120.00252 * 359.97438 * 1 2 3 29 29 H 0.97010 * 119.99639 * 0.02562 * 9 7 2 30 30 H 1.08995 * 113.61457 * 25.43600 * 12 10 9 31 31 H 1.08997 * 113.61331 * 254.53058 * 12 10 9 32 32 H 1.08999 * 109.47366 * 64.99699 * 15 13 12 33 33 H 1.09003 * 109.46797 * 304.99975 * 15 13 12 34 34 H 0.97004 * 119.99853 * 359.97438 * 16 15 13 35 35 H 1.09009 * 109.55216 * 51.16938 * 21 19 17 36 36 H 1.08996 * 109.63867 * 290.69422 * 21 19 17 37 37 H 1.09002 * 109.67626 * 172.78619 * 22 21 19 38 38 H 1.09004 * 109.67030 * 52.28923 * 22 21 19 39 39 H 1.08999 * 109.40300 * 169.00716 * 23 22 21 40 40 H 1.09006 * 109.39693 * 288.75457 * 23 22 21 41 41 H 0.97004 * 117.94322 * 182.22235 * 26 24 23 42 42 H 1.08998 * 113.61635 * 105.46857 * 27 10 9 43 43 H 1.09004 * 113.61376 * 334.56500 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0661 -3.5647 0.4039 12 6 1.2602 -4.8288 0.5950 13 6 1.8481 -5.6976 -0.5296 14 1 2.7980 -6.1646 -0.2693 15 6 0.8450 -6.6852 -1.1291 16 7 1.5262 -7.5432 -2.1017 17 6 0.8362 -8.4956 -2.7598 18 8 -0.3488 -8.6421 -2.5473 19 6 1.5368 -9.3778 -3.7608 20 1 2.2363 -8.7776 -4.3426 21 6 2.3070 -10.4683 -3.0156 22 6 2.8251 -11.4889 -4.0362 23 6 1.6252 -12.2254 -4.6369 24 6 0.5847 -11.2350 -5.0749 25 8 -0.2695 -11.6057 -5.8519 26 7 0.5500 -9.9697 -4.6553 27 6 1.9992 -4.4021 -1.3443 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 0.1799 -4.7002 0.5280 31 1 1.5917 -5.1212 1.5913 32 1 0.0464 -6.1350 -1.6266 33 1 0.4222 -7.3007 -0.3350 34 1 2.4740 -7.4258 -2.2720 35 1 1.6435 -10.9643 -2.3071 36 1 3.1481 -10.0241 -2.4834 37 1 3.4829 -12.2025 -3.5401 38 1 3.3719 -10.9732 -4.8257 39 1 1.9526 -12.8104 -5.4963 40 1 1.1978 -12.8923 -3.8880 41 1 -0.1779 -9.4080 -4.9647 42 1 2.9273 -4.3501 -1.9135 43 1 1.1209 -4.1569 -1.9415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086115836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:37 Heat of formation + Delta-G solvation = -81.296529 kcal Electronic energy + Delta-G solvation = -23182.662519 eV Core-core repulsion = 19647.817976 eV Total energy + Delta-G solvation = -3534.844543 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80916 -40.54812 -39.73118 -37.33934 -36.09260 -35.04400 -33.95122 -32.27681 -31.15461 -28.65021 -26.43230 -26.28927 -25.47219 -23.78327 -22.49365 -21.84888 -20.49466 -20.10080 -19.10544 -18.76839 -18.02539 -17.54341 -16.90594 -16.56190 -16.28659 -16.19648 -15.93333 -15.44963 -15.14881 -15.05034 -14.91913 -14.56565 -14.43221 -14.17290 -13.40947 -13.21752 -13.03691 -13.02222 -12.89874 -12.64188 -12.58625 -12.24448 -12.07011 -11.99954 -11.86278 -11.59170 -11.54018 -11.28816 -11.05918 -10.81061 -10.73545 -10.20421 -10.08759 -8.96576 -7.93837 -5.22082 1.44265 1.47761 1.49935 1.50661 1.56743 1.96918 2.37882 2.57537 3.37889 3.50979 3.57505 3.68542 3.75479 3.77292 3.88356 3.95003 4.08716 4.26558 4.28491 4.37928 4.44856 4.54249 4.58142 4.77636 4.81339 4.85629 4.97338 4.99931 5.01390 5.07856 5.09998 5.24935 5.30580 5.36118 5.43369 5.53923 5.60626 5.76229 6.23270 6.28446 6.51227 7.08691 7.18709 7.33788 8.13147 8.33898 9.29566 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.035022 B = 0.002298 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.300775 B =12183.719424 C =12328.638521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.732 5.732 10 C 0.141 3.859 11 H 0.083 0.917 12 C -0.140 4.140 13 C -0.091 4.091 14 H 0.129 0.871 15 C 0.137 3.863 16 N -0.701 5.701 17 C 0.497 3.503 18 O -0.584 6.584 19 C 0.128 3.872 20 H 0.136 0.864 21 C -0.126 4.126 22 C -0.112 4.112 23 C -0.134 4.134 24 C 0.515 3.485 25 O -0.613 6.613 26 N -0.703 5.703 27 C -0.154 4.154 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.421 0.579 35 H 0.066 0.934 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.394 0.606 42 H 0.072 0.928 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.177 -24.947 -5.365 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.202 1.202 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.369 5.369 10 C 0.032 3.968 11 H 0.101 0.899 12 C -0.179 4.179 13 C -0.110 4.110 14 H 0.147 0.853 15 C 0.013 3.987 16 N -0.354 5.354 17 C 0.283 3.717 18 O -0.464 6.464 19 C 0.020 3.980 20 H 0.153 0.847 21 C -0.164 4.164 22 C -0.149 4.149 23 C -0.174 4.174 24 C 0.305 3.695 25 O -0.495 6.495 26 N -0.353 5.353 27 C -0.194 4.194 28 H 0.058 0.942 29 H 0.202 0.798 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.259 0.741 35 H 0.085 0.915 36 H 0.145 0.855 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.229 0.771 42 H 0.090 0.910 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.266 -25.218 -5.493 28.576 hybrid contribution -0.856 1.767 -0.172 1.971 sum 11.410 -23.451 -5.666 26.688 Atomic orbital electron populations 1.69819 1.06763 1.26047 1.59803 1.25608 0.96349 1.01315 1.04057 0.85213 0.77144 0.79148 0.78281 1.20288 1.22634 1.20198 1.19709 0.91633 0.85361 1.40619 0.90150 1.42658 1.05334 1.01346 1.87544 1.21994 0.95670 0.83756 0.95404 0.89933 1.23346 0.99768 0.96134 0.98684 1.22472 0.99566 0.92803 0.96184 0.85293 1.21228 0.94862 0.91550 0.91055 1.45804 1.14168 1.33719 1.41681 1.21364 0.87140 0.81023 0.82216 1.90756 1.17849 1.71165 1.66632 1.21199 0.90249 0.95963 0.90610 0.84709 1.21980 1.00780 0.95354 0.98301 1.21686 0.96167 0.98295 0.98795 1.21766 0.94638 0.96771 1.04181 1.21037 0.86414 0.82822 0.79248 1.90745 1.42601 1.77794 1.38374 1.45428 1.29834 1.12370 1.47660 1.23724 1.01115 0.96137 0.98456 0.94171 0.79781 0.91899 0.90273 0.93889 0.91658 0.74054 0.91542 0.85477 0.87103 0.89295 0.87006 0.87385 0.77121 0.90963 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 3 Si 0.97 45.51 29.55 68.60 2.03 47.53 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -13.07 9.97 84.03 0.84 -12.23 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.73 -35.89 5.40 -320.46 -1.73 -37.62 16 10 C 0.14 4.99 4.48 45.51 0.20 5.19 16 11 H 0.08 2.79 8.10 -2.39 -0.02 2.77 16 12 C -0.14 -3.93 7.39 31.12 0.23 -3.70 16 13 C -0.09 -1.86 3.76 -10.27 -0.04 -1.90 16 14 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 15 C 0.14 2.90 5.51 86.38 0.48 3.38 16 16 N -0.70 -10.28 5.56 -463.07 -2.57 -12.85 16 17 C 0.50 9.29 6.98 87.66 0.61 9.90 16 18 O -0.58 -17.60 16.38 -3.03 -0.05 -17.65 16 19 C 0.13 1.41 3.46 44.35 0.15 1.57 16 20 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 21 C -0.13 -0.66 5.28 30.67 0.16 -0.50 16 22 C -0.11 -0.34 6.03 30.73 0.19 -0.15 16 23 C -0.13 -1.35 6.03 29.71 0.18 -1.17 16 24 C 0.52 10.58 7.71 87.72 0.68 11.26 16 25 O -0.61 -19.04 17.78 -3.03 -0.05 -19.10 16 26 N -0.70 -12.94 4.78 -450.29 -2.15 -15.10 16 27 C -0.15 -4.39 7.43 31.12 0.23 -4.16 16 28 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.37 19.98 7.92 -92.70 -0.73 19.24 16 30 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.18 7.84 -2.39 -0.02 1.16 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.42 2.90 8.47 -92.71 -0.79 2.11 16 35 H 0.07 0.60 8.10 -2.38 -0.02 0.58 16 36 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.09 0.11 8.13 -2.38 -0.02 0.09 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.39 8.83 8.45 -92.71 -0.78 8.04 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.05 1.79 7.90 -2.38 -0.02 1.77 16 Total: -1.00 -81.65 355.78 -1.14 -82.79 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -1.27 Total: 28.24 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 4.38 Total: 3.31 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -6.18 Total: -125.12 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.10 Total: -36.75 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -81.65 -1.14 -82.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086115836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.494 kcal (2) G-P(sol) polarization free energy of solvation -81.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds