Wall clock time and date at job start Tue Mar 31 2020 03:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86800 * 119.99837 * 2 1 4 4 H 1.48500 * 109.47496 * 94.99755 * 3 2 1 5 5 H 1.48501 * 109.47101 * 215.00314 * 3 2 1 6 6 H 1.48504 * 109.46858 * 334.99768 * 3 2 1 7 7 C 1.40052 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99908 * 356.31831 * 7 2 1 9 9 C 1.46371 * 120.00088 * 176.31369 * 7 2 1 10 10 O 1.21691 * 120.00422 * 30.70692 * 9 7 2 11 11 N 1.34777 * 120.00148 * 210.70386 * 9 7 2 12 12 C 1.46923 * 120.62781 * 354.85629 * 11 9 7 13 13 C 1.53625 * 108.54577 * 126.36823 * 12 11 9 14 14 C 1.53045 * 109.24104 * 54.85378 * 13 12 11 15 15 N 1.46901 * 109.44959 * 178.49974 * 14 13 12 16 16 C 1.47899 * 110.99958 * 60.02104 * 15 14 13 17 17 C 1.53992 * 107.06268 * 214.15494 * 16 15 14 18 18 C 1.54601 * 105.13526 * 1.22452 * 17 16 15 19 19 C 1.48531 * 111.00170 * 302.62734 * 15 14 13 20 20 H 1.08997 * 110.66861 * 41.28085 * 19 15 14 21 21 C 1.50702 * 110.66564 * 278.15801 * 19 15 14 22 22 N 1.34774 * 120.00133 * 180.02562 * 21 19 15 23 23 O 1.21278 * 120.00040 * 359.97438 * 21 19 15 24 24 C 1.53042 * 109.53716 * 298.51210 * 14 13 12 25 25 C 1.46925 * 120.63160 * 175.13392 * 11 9 7 26 26 H 0.96993 * 120.00692 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.59066 * 246.19941 * 12 11 9 28 28 H 1.08997 * 109.59029 * 6.62706 * 12 11 9 29 29 H 1.09004 * 109.63555 * 294.86540 * 13 12 11 30 30 H 1.08999 * 109.46458 * 174.74051 * 13 12 11 31 31 H 1.09001 * 109.45810 * 58.53236 * 14 13 12 32 32 H 1.09003 * 109.92206 * 333.51225 * 16 15 14 33 33 H 1.09002 * 109.91719 * 94.80161 * 16 15 14 34 34 H 1.08996 * 110.31176 * 120.14103 * 17 16 15 35 35 H 1.08994 * 110.31130 * 242.21432 * 17 16 15 36 36 H 1.09003 * 110.72422 * 140.31350 * 18 17 16 37 37 H 1.09001 * 110.72646 * 263.41853 * 18 17 16 38 38 H 0.97002 * 120.00019 * 359.97438 * 22 21 19 39 39 H 0.97000 * 120.00154 * 180.02562 * 22 21 19 40 40 H 1.08994 * 109.49822 * 301.41098 * 24 14 13 41 41 H 1.09006 * 109.52378 * 181.33246 * 24 14 13 42 42 H 1.08995 * 109.58574 * 353.37486 * 25 11 9 43 43 H 1.09001 * 109.58592 * 113.66174 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5938 1.9856 1.3947 5 1 3.4813 1.4731 -0.8031 6 1 1.3892 2.6808 -0.5918 7 6 2.0070 -1.2128 0.0005 8 1 1.4687 -2.1472 0.0610 9 6 3.4685 -1.2141 -0.0810 10 8 4.1051 -0.2915 0.3926 11 7 4.1091 -2.2371 -0.6805 12 6 3.3642 -3.4106 -1.1568 13 6 3.7040 -3.6369 -2.6378 14 6 5.2221 -3.7500 -2.7954 15 7 5.5500 -4.0024 -4.2049 16 6 5.0645 -2.9032 -5.0671 17 6 4.6410 -3.5332 -6.4069 18 6 4.8869 -5.0498 -6.2354 19 6 4.8754 -5.2309 -4.6968 20 1 3.8528 -5.2840 -4.3232 21 6 5.6525 -6.4596 -4.2999 22 7 5.2067 -7.6818 -4.6519 23 8 6.6796 -6.3485 -3.6646 24 6 5.8821 -2.4451 -2.3441 25 6 5.5664 -2.2028 -0.8648 26 1 -0.4851 0.8399 -0.0004 27 1 3.6515 -4.2866 -0.5752 28 1 2.2943 -3.2327 -1.0490 29 1 3.3383 -2.7979 -3.2298 30 1 3.2329 -4.5576 -2.9819 31 1 5.5903 -4.5737 -2.1838 32 1 4.2094 -2.4146 -4.5998 33 1 5.8635 -2.1805 -5.2327 34 1 3.5855 -3.3403 -6.5988 35 1 5.2508 -3.1391 -7.2198 36 1 4.0847 -5.6253 -6.6975 37 1 5.8530 -5.3336 -6.6528 38 1 4.3854 -7.7706 -5.1603 39 1 5.7068 -8.4726 -4.3961 40 1 5.4960 -1.6174 -2.9389 41 1 6.9614 -2.5173 -2.4787 42 1 5.9498 -1.2278 -0.5642 43 1 6.0298 -2.9807 -0.2579 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116641174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:16 Heat of formation + Delta-G solvation = -97.344919 kcal Electronic energy + Delta-G solvation = -25205.084912 eV Core-core repulsion = 21669.544459 eV Total energy + Delta-G solvation = -3535.540454 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.62093 -40.35646 -39.14861 -37.34510 -34.98673 -34.70758 -33.90070 -32.25103 -30.48560 -30.21924 -28.59958 -25.44839 -24.38631 -23.97270 -22.68556 -21.63788 -20.80967 -19.98106 -18.76501 -18.26611 -18.07934 -17.79254 -17.16208 -16.70636 -16.06059 -15.87524 -15.63794 -15.61007 -15.10490 -15.03000 -14.75332 -14.49379 -14.19719 -14.09969 -13.79866 -13.55149 -13.40865 -13.06233 -12.78334 -12.58717 -12.51054 -12.29538 -12.23610 -12.14350 -11.83206 -11.62340 -11.54628 -11.22788 -11.14407 -10.81995 -10.56393 -10.08255 -9.35646 -9.23652 -8.76444 -6.95635 1.30797 1.32779 1.57112 1.71687 2.07377 2.29223 2.43485 2.60740 3.09394 3.24098 3.59346 3.61651 3.81263 3.90308 4.04695 4.09181 4.18183 4.23609 4.24904 4.37113 4.45202 4.59101 4.65726 4.73472 4.83315 4.85751 4.92124 4.93433 4.96487 5.01623 5.09814 5.14319 5.20189 5.25993 5.39633 5.70006 5.86574 5.97200 6.00504 6.02891 6.22605 6.57589 6.64725 7.10147 7.46119 7.92869 8.30058 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.023070 B = 0.004287 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.426723 B = 6530.259979 C = 6693.709313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.074 3.926 3 Si 0.990 3.010 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.292 1.292 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.557 3.443 10 O -0.642 6.642 11 N -0.628 5.628 12 C 0.122 3.878 13 C -0.156 4.156 14 C 0.092 3.908 15 N -0.500 5.500 16 C 0.023 3.977 17 C -0.124 4.124 18 C -0.101 4.101 19 C 0.031 3.969 20 H 0.101 0.899 21 C 0.524 3.476 22 N -0.837 5.837 23 O -0.576 6.576 24 C -0.109 4.109 25 C 0.117 3.883 26 H 0.290 0.710 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.417 0.583 39 H 0.407 0.593 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.479 -15.133 -17.195 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.141 4.141 3 Si 0.821 3.179 4 H -0.215 1.215 5 H -0.208 1.208 6 H -0.221 1.221 7 C -0.588 4.588 8 H 0.102 0.898 9 C 0.362 3.638 10 O -0.534 6.534 11 N -0.361 5.361 12 C -0.002 4.002 13 C -0.196 4.196 14 C -0.017 4.017 15 N -0.223 5.223 16 C -0.105 4.105 17 C -0.162 4.162 18 C -0.139 4.139 19 C -0.081 4.081 20 H 0.118 0.882 21 C 0.309 3.691 22 N -0.402 5.402 23 O -0.454 6.454 24 C -0.147 4.147 25 C -0.007 4.007 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.091 0.909 38 H 0.248 0.752 39 H 0.239 0.761 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.806 -14.430 -16.605 23.028 hybrid contribution -0.771 0.563 0.571 1.112 sum 6.035 -13.867 -16.034 22.041 Atomic orbital electron populations 1.69518 1.07961 1.30749 1.40608 1.26039 0.95263 1.02962 0.89809 0.85015 0.76980 0.77118 0.78801 1.21518 1.20767 1.22058 1.20835 0.89205 0.95351 1.53452 0.89837 1.18394 0.88882 0.80030 0.76451 1.90291 1.69469 1.39025 1.54621 1.47831 1.06886 1.20288 1.61099 1.21624 0.97699 0.86891 0.93938 1.22634 0.97633 1.02592 0.96705 1.21619 0.92838 0.97460 0.89815 1.64693 1.54155 1.01826 1.01614 1.23022 0.99254 0.94368 0.93821 1.22389 1.02656 0.94857 0.96283 1.22461 1.03814 0.97032 0.90608 1.22971 0.97248 0.89463 0.98407 0.88202 1.20577 0.84744 0.85802 0.78006 1.43661 1.30269 1.07121 1.59144 1.90734 1.26425 1.87254 1.41015 1.21784 1.01350 0.96829 0.94786 1.21372 0.81310 1.01655 0.96317 0.89943 0.91826 0.89906 0.91756 0.88822 0.90641 0.93521 0.90878 0.89798 0.89784 0.86945 0.90899 0.75161 0.76133 0.92722 0.89836 0.91747 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.31 13.92 21.84 0.30 -48.01 16 2 C 0.07 4.20 5.52 85.31 0.47 4.67 16 3 Si 0.99 51.86 26.18 68.60 1.80 53.65 16 4 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 5 H -0.28 -15.72 6.42 99.48 0.64 -15.08 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 7 C -0.55 -31.34 9.00 24.83 0.22 -31.11 16 8 H 0.08 4.75 6.55 -2.91 -0.02 4.73 16 9 C 0.56 30.26 7.07 86.36 0.61 30.87 16 10 O -0.64 -38.25 12.16 -4.32 -0.05 -38.30 16 11 N -0.63 -27.52 2.97 -823.16 -2.44 -29.96 16 12 C 0.12 4.35 6.37 86.51 0.55 4.91 16 13 C -0.16 -4.43 4.73 30.82 0.15 -4.28 16 14 C 0.09 2.62 2.10 44.94 0.09 2.71 16 15 N -0.50 -12.34 4.60 -837.38 -3.86 -16.20 16 16 C 0.02 0.50 5.19 86.45 0.45 0.95 16 17 C -0.12 -1.79 6.93 31.47 0.22 -1.57 16 18 C -0.10 -1.24 6.48 31.80 0.21 -1.04 16 19 C 0.03 0.56 2.54 44.52 0.11 0.67 16 20 H 0.10 1.57 5.55 -2.39 -0.01 1.56 16 21 C 0.52 10.84 7.29 87.66 0.64 11.48 16 22 N -0.84 -8.91 8.87 -173.54 -1.54 -10.45 16 23 O -0.58 -18.16 16.65 -3.02 -0.05 -18.21 16 24 C -0.11 -3.49 5.23 30.67 0.16 -3.33 16 25 C 0.12 4.48 6.42 86.36 0.55 5.03 16 26 H 0.29 14.99 8.29 -92.71 -0.77 14.22 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.08 3.28 5.56 -2.39 -0.01 3.27 16 29 H 0.06 1.99 6.04 -2.39 -0.01 1.98 16 30 H 0.09 2.09 5.94 -2.39 -0.01 2.07 16 31 H 0.08 2.37 7.47 -2.39 -0.02 2.36 16 32 H 0.05 1.16 5.31 -2.39 -0.01 1.15 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 1.01 8.05 -2.39 -0.02 0.99 16 38 H 0.42 1.47 8.83 -92.71 -0.82 0.65 16 39 H 0.41 3.79 8.93 -92.71 -0.83 2.96 16 40 H 0.05 1.85 7.11 -2.39 -0.02 1.84 16 41 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 42 H 0.06 2.76 7.03 -2.39 -0.02 2.74 16 43 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -77.00 328.54 -2.06 -79.06 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -0.66 Total: 8.47 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: 4.44 Total: 19.95 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -7.53 Total: -104.62 kcal Atomic # 8 Polarization: -56.41 SS G_CDS: -0.10 Total: -56.51 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 1.80 Total: 53.65 kcal Total: -77.00 -2.06 -79.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116641174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.285 kcal (2) G-P(sol) polarization free energy of solvation -77.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds