Wall clock time and date at job start Tue Mar 31 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00406 * 2 1 4 4 H 1.48499 * 109.47258 * 269.99734 * 3 2 1 5 5 H 1.48499 * 109.47382 * 30.00031 * 3 2 1 6 6 H 1.48501 * 109.47255 * 149.99991 * 3 2 1 7 7 C 1.38817 * 119.99642 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00037 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00219 * 179.97438 * 7 2 1 10 10 C 1.46490 * 120.00198 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.49905 * 325.06428 * 10 9 7 12 12 C 1.53039 * 109.49928 * 205.00271 * 10 9 7 13 13 C 1.53043 * 109.54164 * 178.65173 * 12 10 9 14 14 C 1.53193 * 109.31416 * 61.36246 * 13 12 10 15 15 N 1.46929 * 108.89367 * 305.29659 * 14 13 12 16 16 C 1.34774 * 120.63278 * 233.68278 * 15 14 13 17 17 O 1.21351 * 119.99543 * 352.40362 * 16 15 14 18 18 C 1.49446 * 120.00245 * 172.40590 * 16 15 14 19 19 O 1.21349 * 119.99992 * 354.02344 * 18 16 15 20 20 N 1.34773 * 120.00337 * 174.02196 * 18 16 15 21 21 C 1.46497 * 120.00479 * 179.97438 * 20 18 16 22 22 C 1.53002 * 109.47358 * 179.97438 * 21 20 18 23 23 C 1.53001 * 117.50022 * 243.62322 * 22 21 20 24 24 C 1.52998 * 117.49832 * 174.99727 * 22 21 20 25 25 C 1.47209 * 118.55401 * 53.53664 * 15 14 13 26 26 H 0.97007 * 119.99579 * 359.97438 * 1 2 3 27 27 H 0.96997 * 119.99687 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.46155 * 58.62602 * 12 10 9 29 29 H 1.09001 * 109.46107 * 298.66868 * 12 10 9 30 30 H 1.08999 * 109.49345 * 301.41080 * 13 12 10 31 31 H 1.09003 * 109.52902 * 181.33495 * 13 12 10 32 32 H 1.08995 * 109.58289 * 65.15255 * 14 13 12 33 33 H 1.08999 * 109.58628 * 185.43477 * 14 13 12 34 34 H 0.97003 * 119.99576 * 0.02562 * 20 18 16 35 35 H 1.08997 * 109.47375 * 300.00139 * 21 20 18 36 36 H 1.09004 * 109.46778 * 59.99862 * 21 20 18 37 37 H 1.08998 * 115.54634 * 29.33414 * 22 21 20 38 38 H 1.08991 * 117.49610 * 0.02562 * 23 22 21 39 39 H 1.09002 * 117.49562 * 145.02337 * 23 22 21 40 40 H 1.08993 * 117.50282 * 214.98096 * 24 22 21 41 41 H 1.09001 * 117.49802 * 359.97438 * 24 22 21 42 42 H 1.09002 * 109.53562 * 186.67665 * 25 15 14 43 43 H 1.09003 * 109.67502 * 66.36883 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2024 0.0000 10 6 4.1119 -2.4711 0.0000 11 1 3.5645 -3.2072 0.5888 12 6 5.4998 -2.2597 0.6092 13 6 6.2534 -3.5914 0.6405 14 6 6.4273 -4.1089 -0.7909 15 7 5.1084 -4.1800 -1.4346 16 6 4.6839 -5.3245 -2.0059 17 8 5.4419 -6.2658 -2.1146 18 6 3.2796 -5.4343 -2.5054 19 8 2.4907 -4.5353 -2.3004 20 7 2.8894 -6.5317 -3.1835 21 6 1.5127 -6.6396 -3.6726 22 6 1.3341 -7.9719 -4.4034 23 6 1.0051 -7.9199 -5.8968 24 6 -0.0722 -8.3278 -4.8897 25 6 4.2615 -2.9759 -1.4386 26 1 -0.4850 0.8401 0.0004 27 1 3.8646 -0.3624 -0.0004 28 1 5.3964 -1.8770 1.6245 29 1 6.0558 -1.5421 0.0058 30 1 5.6858 -4.3169 1.2232 31 1 7.2328 -3.4453 1.0960 32 1 7.0704 -3.4290 -1.3496 33 1 6.8769 -5.1016 -0.7684 34 1 3.5200 -7.2504 -3.3470 35 1 0.8229 -6.5916 -2.8301 36 1 1.3056 -5.8185 -4.3589 37 1 1.9677 -8.7876 -4.0554 38 1 0.9163 -6.9367 -6.3586 39 1 1.4224 -8.7016 -6.5315 40 1 -0.3637 -9.3777 -4.8621 41 1 -0.8702 -7.6130 -4.6886 42 1 3.2799 -3.2221 -1.8434 43 1 4.7258 -2.2027 -2.0507 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210377281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:40 Heat of formation + Delta-G solvation = -10.344566 kcal Electronic energy + Delta-G solvation = -24267.998577 eV Core-core repulsion = 20736.230742 eV Total energy + Delta-G solvation = -3531.767835 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78017 -38.86627 -37.64591 -37.50525 -34.66142 -34.14576 -32.34133 -31.33809 -28.71821 -28.00320 -25.69434 -23.90053 -23.07668 -22.65504 -21.40069 -21.23882 -20.36151 -19.39412 -17.57174 -17.45979 -16.93199 -16.36435 -15.72902 -15.38425 -14.93285 -14.64898 -14.52704 -14.30047 -14.07695 -14.00158 -13.60705 -13.23914 -13.10336 -12.56375 -12.51243 -12.45946 -11.81062 -11.79572 -11.69927 -11.26163 -11.12674 -10.86055 -10.76863 -10.66683 -10.54392 -10.48437 -10.25046 -10.00826 -9.52676 -9.23358 -9.16054 -8.70446 -8.46489 -7.24178 -5.71696 -3.08241 1.55852 2.41816 3.33583 3.39367 3.41910 3.42961 3.47619 3.66207 4.35575 4.41656 4.61705 4.62538 4.70670 4.94806 4.97475 5.08323 5.20643 5.36026 5.40972 5.42286 5.50261 5.56891 5.61676 5.64375 5.74887 5.83227 5.84980 5.87256 5.95980 6.06046 6.12511 6.15445 6.26505 6.43938 6.57671 6.86606 6.93636 7.15297 7.48057 7.91066 8.05681 8.16533 8.47196 9.24677 9.96165 10.14711 11.46528 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.004586 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.883972 B = 6104.512756 C = 8011.959030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.094 0.906 9 N -0.741 5.741 10 C 0.178 3.822 11 H 0.059 0.941 12 C -0.133 4.133 13 C -0.128 4.128 14 C 0.107 3.893 15 N -0.571 5.571 16 C 0.508 3.492 17 O -0.541 6.541 18 C 0.501 3.499 19 O -0.482 6.482 20 N -0.702 5.702 21 C 0.147 3.853 22 C -0.171 4.171 23 C -0.177 4.177 24 C -0.169 4.169 25 C 0.029 3.971 26 H 0.258 0.742 27 H 0.362 0.638 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.410 0.590 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.157 0.843 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.977 -15.337 -7.628 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.112 0.888 9 N -0.383 5.383 10 C 0.067 3.933 11 H 0.077 0.923 12 C -0.171 4.171 13 C -0.166 4.166 14 C -0.015 4.015 15 N -0.303 5.303 16 C 0.290 3.710 17 O -0.420 6.420 18 C 0.282 3.718 19 O -0.356 6.356 20 N -0.356 5.356 21 C 0.024 3.976 22 C -0.190 4.190 23 C -0.214 4.214 24 C -0.207 4.207 25 C -0.093 4.093 26 H 0.069 0.931 27 H 0.194 0.806 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.246 0.754 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.173 0.827 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.524 -15.196 -7.515 18.975 hybrid contribution 0.910 1.036 -0.083 1.381 sum 9.434 -14.160 -7.598 18.634 Atomic orbital electron populations 1.69707 1.05072 1.25650 1.57576 1.24658 0.95193 0.97032 1.02103 0.86591 0.79223 0.85229 0.77728 1.21139 1.21800 1.20364 1.19134 0.80326 0.94909 1.42695 0.88836 1.42710 1.04171 1.01651 1.89798 1.20378 0.90675 0.89470 0.92749 0.92342 1.21922 0.97010 0.96393 1.01810 1.21862 1.00892 0.98064 0.95824 1.21724 0.83873 1.02601 0.93295 1.48251 1.18024 1.11344 1.52683 1.19966 0.87778 0.83377 0.79847 1.90695 1.55954 1.38238 1.57135 1.20306 0.89070 0.82954 0.79460 1.90556 1.53967 1.36409 1.54667 1.45723 1.13561 1.20682 1.55629 1.21029 0.82355 0.95607 0.98614 1.22442 1.00689 0.98722 0.97103 1.23109 1.03224 1.03416 0.91672 1.22971 0.91832 1.02584 1.03271 1.24315 0.99089 0.84198 1.01725 0.93144 0.80563 0.91346 0.92190 0.91424 0.90751 0.91217 0.89265 0.75379 0.90200 0.90551 0.87044 0.88346 0.88643 0.88421 0.88146 0.82651 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 22.12 27.74 -169.99 -4.71 17.40 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.24 -6.85 10.41 -15.06 -0.16 -7.00 16 8 H 0.09 2.91 8.06 -52.49 -0.42 2.48 16 9 N -0.74 -17.55 4.93 -53.31 -0.26 -17.81 16 10 C 0.18 3.48 2.92 -67.82 -0.20 3.28 16 11 H 0.06 1.25 8.08 -51.92 -0.42 0.83 16 12 C -0.13 -2.05 5.35 -26.69 -0.14 -2.19 16 13 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 14 C 0.11 1.41 6.40 -3.71 -0.02 1.38 16 15 N -0.57 -9.06 2.98 -173.04 -0.52 -9.58 16 16 C 0.51 8.14 7.74 -11.59 -0.09 8.05 16 17 O -0.54 -8.88 15.95 5.50 0.09 -8.79 16 18 C 0.50 7.91 7.78 -11.59 -0.09 7.82 16 19 O -0.48 -9.30 13.11 5.50 0.07 -9.23 16 20 N -0.70 -8.52 5.55 -60.73 -0.34 -8.85 16 21 C 0.15 1.60 5.96 -4.04 -0.02 1.57 16 22 C -0.17 -1.39 5.85 -90.62 -0.53 -1.92 16 23 C -0.18 -1.30 10.18 -26.73 -0.27 -1.57 16 24 C -0.17 -1.23 10.25 -26.73 -0.27 -1.51 16 25 C 0.03 0.54 5.86 -3.55 -0.02 0.52 16 26 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 27 H 0.36 8.34 5.66 -40.82 -0.23 8.11 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.13 7.06 -51.93 -0.37 0.77 16 34 H 0.41 4.24 7.89 -40.82 -0.32 3.92 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.89 7.87 -51.93 -0.41 0.48 16 37 H 0.11 0.80 8.04 -51.93 -0.42 0.38 16 38 H 0.10 0.75 8.03 -51.93 -0.42 0.33 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.16 3.30 3.82 -56.59 -0.22 3.09 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 349.48 15.07 5.27 5.27 Total: -1.00 -33.15 349.48 -8.33 -41.48 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -6.62 Total: 12.13 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -2.08 Total: 6.74 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -0.34 Total: -64.99 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.16 Total: -18.02 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.15 -8.33 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210377281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.136 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds