Wall clock time and date at job start Tue Mar 31 2020 03:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.46880 * 124.37410 * 269.72824 * 11 10 9 13 13 C 1.54880 * 105.42958 * 163.04653 * 12 11 10 14 14 C 1.53634 * 101.43218 * 24.88213 * 13 12 11 15 15 C 1.53612 * 110.82468 * 96.68117 * 14 13 12 16 16 C 1.55164 * 102.65806 * 99.45566 * 15 14 13 17 17 N 1.48625 * 103.35955 * 36.58509 * 16 15 14 18 18 C 1.46896 * 110.99865 * 200.85197 * 17 16 15 19 19 C 1.50698 * 109.47602 * 307.45263 * 18 17 16 20 20 N 1.34776 * 120.00436 * 179.97438 * 19 18 17 21 21 O 1.21285 * 119.99669 * 359.97438 * 19 18 17 22 22 C 1.48184 * 105.86441 * 321.39393 * 17 16 15 23 23 C 1.34754 * 124.36982 * 90.02252 * 11 10 9 24 24 O 1.21285 * 125.13533 * 1.02215 * 23 11 10 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 29 29 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 30 30 H 1.08997 * 110.23206 * 282.19133 * 12 11 10 31 31 H 1.09000 * 110.23504 * 44.16031 * 12 11 10 32 32 H 1.08998 * 111.23827 * 266.77050 * 13 12 11 33 33 H 1.09002 * 110.89493 * 142.85080 * 13 12 11 34 34 H 1.08993 * 110.76994 * 217.74795 * 15 14 13 35 35 H 1.09000 * 110.77524 * 341.16225 * 15 14 13 36 36 H 1.09001 * 110.64515 * 278.11704 * 16 15 14 37 37 H 1.09002 * 110.77935 * 155.11744 * 16 15 14 38 38 H 1.09008 * 109.46932 * 67.45455 * 18 17 16 39 39 H 1.09004 * 109.47323 * 187.44755 * 18 17 16 40 40 H 0.96998 * 119.99910 * 0.02562 * 20 19 18 41 41 H 0.96996 * 120.00079 * 179.97438 * 20 19 18 42 42 H 1.09001 * 110.02174 * 265.79668 * 22 17 16 43 43 H 1.09001 * 110.05914 * 144.41910 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.1034 -5.6516 1.2138 13 6 0.0186 -6.6552 0.7503 14 6 0.3842 -6.8363 -0.7308 15 6 1.2444 -8.0932 -0.9312 16 6 0.2094 -9.1383 -1.4254 17 7 -0.7074 -8.3371 -2.2778 18 6 -2.0029 -9.0113 -2.4358 19 6 -1.7796 -10.4238 -2.9111 20 7 -2.8327 -11.2369 -3.1262 21 8 -0.6522 -10.8289 -3.1001 22 6 -0.8668 -7.0350 -1.5888 23 6 1.1322 -5.5902 -1.1108 24 8 1.3598 -5.2320 -2.2470 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 2.8718 -3.6044 -0.8895 29 1 2.8718 -3.6044 0.8904 30 1 1.9537 -6.1822 1.6420 31 1 0.6859 -4.9567 1.9425 32 1 -0.9809 -6.2338 0.8576 33 1 0.1036 -7.5972 1.2921 34 1 2.0106 -7.9207 -1.6869 35 1 1.6930 -8.4089 0.0107 36 1 -0.3299 -9.5728 -0.5837 37 1 0.6965 -9.9175 -2.0116 38 1 -2.5229 -9.0281 -1.4779 39 1 -2.6059 -8.4729 -3.1671 40 1 -3.7344 -10.9129 -2.9754 41 1 -2.6890 -12.1460 -3.4325 42 1 -1.7541 -7.0538 -0.9559 43 1 -0.9482 -6.2319 -2.3213 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274061166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:44 Heat of formation + Delta-G solvation = -92.004584 kcal Electronic energy + Delta-G solvation = -24259.707458 eV Core-core repulsion = 20724.398579 eV Total energy + Delta-G solvation = -3535.308879 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.17254 -40.63393 -38.67238 -37.43725 -35.72944 -34.65871 -34.16797 -32.06327 -30.47274 -29.41189 -27.80629 -26.83732 -24.44386 -23.57918 -22.78145 -21.68512 -21.29620 -19.93053 -18.70241 -18.26900 -17.75533 -17.36074 -17.22328 -16.67031 -16.46262 -16.17384 -15.90243 -15.64714 -15.22651 -14.92820 -14.55602 -14.38873 -14.27340 -14.19966 -13.62798 -13.49879 -13.22920 -12.95770 -12.89563 -12.77739 -12.64151 -12.54611 -12.37135 -12.05794 -11.97322 -11.79662 -11.58872 -11.39251 -10.76092 -10.65585 -10.59405 -10.54636 -9.55286 -9.33906 -8.24624 -6.37146 1.38186 1.40047 1.52736 1.57629 1.66793 2.14773 2.40461 2.46910 3.05883 3.08895 3.21832 3.45376 3.60302 3.90232 4.03726 4.12528 4.21786 4.29688 4.33435 4.35439 4.44779 4.48309 4.58688 4.64859 4.73405 4.81323 4.86670 4.89400 4.96857 5.09828 5.15753 5.19625 5.33142 5.46502 5.59908 5.81052 5.86320 5.90481 6.01970 6.15203 6.30962 6.53420 6.78065 7.24118 7.32666 7.41699 8.87772 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.032695 B = 0.003009 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.191806 B = 9304.107714 C = 9575.614111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.025 3.975 10 C 0.141 3.859 11 N -0.620 5.620 12 C 0.093 3.907 13 C -0.107 4.107 14 C -0.100 4.100 15 C -0.097 4.097 16 C 0.047 3.953 17 N -0.528 5.528 18 C 0.022 3.978 19 C 0.514 3.486 20 N -0.836 5.836 21 O -0.575 6.575 22 C 0.064 3.936 23 C 0.511 3.489 24 O -0.584 6.584 25 H 0.265 0.735 26 H 0.004 0.996 27 H -0.028 1.028 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.047 0.953 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.418 0.582 41 H 0.408 0.592 42 H 0.088 0.912 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 -24.113 3.965 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.013 4.013 10 C 0.020 3.980 11 N -0.352 5.352 12 C -0.028 4.028 13 C -0.145 4.145 14 C -0.104 4.104 15 C -0.135 4.135 16 C -0.079 4.079 17 N -0.253 5.253 18 C -0.108 4.108 19 C 0.299 3.701 20 N -0.401 5.401 21 O -0.455 6.455 22 C -0.064 4.064 23 C 0.299 3.701 24 O -0.464 6.464 25 H 0.073 0.927 26 H 0.022 0.978 27 H -0.010 1.010 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.150 0.850 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.136 0.864 40 H 0.250 0.750 41 H 0.239 0.761 42 H 0.106 0.894 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.201 -23.766 2.818 24.992 hybrid contribution -0.430 1.148 0.098 1.230 sum -7.631 -22.617 2.916 24.047 Atomic orbital electron populations 1.70114 1.07910 1.27860 1.51234 1.26008 0.95816 1.03535 0.94381 0.85326 0.79090 0.78334 0.77851 1.18402 1.20768 1.19695 1.21576 0.93720 0.91857 1.51190 0.91683 1.19199 0.94523 0.92998 0.94547 1.21350 0.93967 0.81220 1.01499 1.48758 1.56003 1.22205 1.08212 1.22483 0.98981 0.94875 0.86509 1.22841 0.99119 1.01276 0.91216 1.21520 0.96783 0.93626 0.98454 1.22405 0.97087 0.91517 1.02505 1.23412 0.93712 0.95630 0.95194 1.64656 1.10881 1.02800 1.46950 1.22363 0.92668 0.91762 1.04051 1.20726 0.84754 0.88118 0.76466 1.43656 1.09512 1.16687 1.70204 1.90705 1.24736 1.77226 1.52796 1.22648 0.95867 0.92131 0.95734 1.21160 0.79021 0.85845 0.84072 1.90656 1.59507 1.72932 1.23298 0.92656 0.97776 1.00993 0.93372 0.89036 0.88442 0.90033 0.89034 0.84991 0.93387 0.87044 0.91583 0.89015 0.88261 0.86379 0.75031 0.76055 0.89448 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 2 C 0.00 0.04 5.46 84.66 0.46 0.51 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.40 5.30 29.85 0.16 1.56 16 10 C 0.14 6.27 5.89 86.38 0.51 6.78 16 11 N -0.62 -23.09 2.94 -817.82 -2.41 -25.50 16 12 C 0.09 2.26 7.37 86.95 0.64 2.90 16 13 C -0.11 -1.97 6.08 31.45 0.19 -1.78 16 14 C -0.10 -2.67 0.77 -52.66 -0.04 -2.71 16 15 C -0.10 -2.30 6.11 31.54 0.19 -2.10 16 16 C 0.05 1.05 5.31 86.71 0.46 1.51 16 17 N -0.53 -12.85 5.27 -888.08 -4.68 -17.53 16 18 C 0.02 0.34 5.52 85.56 0.47 0.81 16 19 C 0.51 8.78 7.81 87.66 0.68 9.47 16 20 N -0.84 -6.30 8.87 -173.53 -1.54 -7.84 16 21 O -0.58 -15.51 14.36 -3.04 -0.04 -15.55 16 22 C 0.06 1.65 6.01 86.05 0.52 2.17 16 23 C 0.51 20.32 6.63 87.51 0.58 20.90 16 24 O -0.58 -29.79 17.17 -3.05 -0.05 -29.84 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 27 H -0.03 -1.82 8.14 -2.39 -0.02 -1.84 16 28 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 29 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 30 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.09 1.59 7.62 -2.39 -0.02 1.58 16 33 H 0.13 1.34 7.67 -2.39 -0.02 1.32 16 34 H 0.05 1.46 7.92 -2.39 -0.02 1.44 16 35 H 0.11 1.86 7.64 -2.39 -0.02 1.85 16 36 H 0.07 1.08 8.01 -2.39 -0.02 1.06 16 37 H 0.09 2.47 5.99 -2.39 -0.01 2.46 16 38 H 0.10 0.87 7.82 -2.38 -0.02 0.85 16 39 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.42 0.29 8.83 -92.71 -0.82 -0.53 16 41 H 0.41 2.60 8.93 -92.71 -0.83 1.77 16 42 H 0.09 1.60 6.86 -2.39 -0.02 1.59 16 43 H 0.05 1.79 7.46 -2.39 -0.02 1.77 16 Total: -1.00 -87.92 347.71 -1.97 -89.89 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -0.61 Total: 8.40 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 5.06 Total: 8.41 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -8.35 Total: -108.33 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -0.10 Total: -45.39 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -87.92 -1.97 -89.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274061166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.119 kcal (2) G-P(sol) polarization free energy of solvation -87.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds