Wall clock time and date at job start Tue Mar 31 2020 03:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99880 * 2 1 4 4 H 1.48492 * 109.47084 * 239.99571 * 3 2 1 5 5 H 1.48495 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47133 * 119.99381 * 3 2 1 7 7 C 1.38809 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00325 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64819 * 14.76696 * 9 7 2 11 11 C 1.54911 * 104.83203 * 155.90701 * 10 9 7 12 12 C 1.55403 * 101.66572 * 36.92629 * 11 10 9 13 13 C 1.47016 * 125.64853 * 194.81084 * 9 7 2 14 14 H 1.09000 * 109.88554 * 300.59554 * 13 9 7 15 15 C 1.53005 * 109.88385 * 61.60372 * 13 9 7 16 16 N 1.46499 * 109.47164 * 184.49978 * 15 13 9 17 17 C 1.34781 * 119.99855 * 185.11504 * 16 15 13 18 18 O 1.21280 * 119.99861 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99844 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.47154 * 180.02562 * 19 17 16 21 21 C 1.46763 * 124.34895 * 90.00080 * 20 19 17 22 22 C 1.54476 * 105.47134 * 196.75437 * 21 20 19 23 23 C 1.54631 * 101.76603 * 334.58015 * 22 21 20 24 24 C 1.34411 * 124.34923 * 269.70522 * 20 19 17 25 25 O 1.21293 * 124.94279 * 359.82762 * 24 20 19 26 26 H 0.96999 * 119.99872 * 0.02562 * 1 2 3 27 27 H 1.08998 * 110.36452 * 274.74945 * 10 9 7 28 28 H 1.08995 * 110.36590 * 36.95846 * 10 9 7 29 29 H 1.09001 * 110.99925 * 155.08057 * 11 10 9 30 30 H 1.08997 * 111.00491 * 278.89802 * 11 10 9 31 31 H 1.08998 * 110.85376 * 206.29748 * 12 11 10 32 32 H 1.09007 * 110.69507 * 82.94631 * 12 11 10 33 33 H 1.09003 * 109.46812 * 64.50275 * 15 13 9 34 34 H 1.09000 * 109.47179 * 304.50106 * 15 13 9 35 35 H 0.96999 * 120.00170 * 5.10980 * 16 15 13 36 36 H 1.08994 * 109.47070 * 59.99956 * 19 17 16 37 37 H 1.09001 * 109.47087 * 299.99832 * 19 17 16 38 38 H 1.09002 * 110.24507 * 315.74770 * 21 20 19 39 39 H 1.08993 * 110.24663 * 77.66103 * 21 20 19 40 40 H 1.08997 * 110.97173 * 92.70172 * 22 21 20 41 41 H 1.09004 * 110.96856 * 216.46657 * 22 21 20 42 42 H 1.08997 * 110.48357 * 143.47597 * 23 22 21 43 43 H 1.08991 * 110.48848 * 265.99342 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1071 -2.5531 -0.3053 11 6 -0.2456 -4.0227 -0.7752 12 6 0.7666 -4.7469 0.1554 13 6 1.8973 -3.7075 0.3064 14 1 2.7037 -3.9330 -0.3914 15 6 2.4309 -3.7237 1.7404 16 7 3.0936 -5.0041 2.0004 17 6 3.5523 -5.2868 3.2358 18 8 3.4168 -4.4810 4.1320 19 6 4.2335 -6.6041 3.5034 20 7 4.6361 -6.6688 4.9106 21 6 3.7946 -7.2006 5.9890 22 6 4.4273 -6.6819 7.2993 23 6 5.8985 -6.4656 6.8750 24 6 5.8257 -6.2538 5.3789 25 8 6.7121 -5.7792 4.7006 26 1 -0.4850 0.8400 -0.0004 27 1 -0.7078 -2.3821 0.5880 28 1 -0.4066 -1.8693 -1.0995 29 1 -1.2587 -4.3908 -0.6132 30 1 0.0434 -4.1274 -1.8210 31 1 1.1400 -5.6580 -0.3119 32 1 0.3126 -4.9660 1.1219 33 1 1.6029 -3.5950 2.4375 34 1 3.1458 -2.9114 1.8712 35 1 3.2022 -5.6484 1.2835 36 1 5.1150 -6.6929 2.8685 37 1 3.5448 -7.4203 3.2851 38 1 2.7747 -6.8290 5.8898 39 1 3.8020 -8.2904 5.9706 40 1 3.9686 -5.7429 7.6090 41 1 4.3552 -7.4289 8.0898 42 1 6.3112 -5.5840 7.3654 43 1 6.4964 -7.3463 7.1090 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493075962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:43 Heat of formation + Delta-G solvation = -70.603967 kcal Electronic energy + Delta-G solvation = -24069.168625 eV Core-core repulsion = 20534.787746 eV Total energy + Delta-G solvation = -3534.380879 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.61694 -40.43439 -39.21410 -37.43384 -35.76915 -34.44113 -33.85426 -31.48700 -30.65033 -28.47419 -28.40434 -26.67471 -25.35033 -22.80361 -22.17227 -21.77865 -21.26400 -20.40400 -18.97374 -18.26437 -17.98115 -17.35892 -17.07557 -16.67300 -16.52121 -16.02830 -15.79676 -15.60030 -14.86004 -14.72318 -14.70000 -14.51362 -14.00229 -13.80508 -13.67216 -13.49760 -13.31878 -13.09069 -12.91978 -12.89080 -12.68632 -12.30618 -12.08431 -11.92594 -11.88588 -11.73730 -11.51260 -11.40509 -11.21599 -10.92683 -10.71017 -10.11252 -9.76698 -8.88477 -7.92513 -5.29899 1.39123 1.41122 1.43931 1.49543 1.58250 1.91546 2.33662 2.48776 3.27062 3.42476 3.62602 3.66357 3.84724 3.96138 3.97564 4.06837 4.17327 4.22853 4.25995 4.32029 4.43147 4.53335 4.67064 4.71296 4.71775 4.88177 4.94369 4.99059 5.07108 5.13867 5.21436 5.23501 5.34650 5.42926 5.43823 5.55690 5.64926 5.76429 6.06452 6.20285 6.55481 7.06052 7.08440 7.25948 7.73242 8.38502 9.18115 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018755 B = 0.003522 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.551110 B = 7948.033391 C = 8831.897738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.612 5.612 10 C 0.173 3.827 11 C -0.133 4.133 12 C -0.109 4.109 13 C 0.147 3.853 14 H 0.050 0.950 15 C 0.132 3.868 16 N -0.704 5.704 17 C 0.482 3.518 18 O -0.589 6.589 19 C 0.112 3.888 20 N -0.607 5.607 21 C 0.098 3.902 22 C -0.123 4.123 23 C -0.147 4.147 24 C 0.501 3.499 25 O -0.590 6.590 26 H 0.249 0.751 27 H -0.009 1.009 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.021 0.979 35 H 0.419 0.581 36 H 0.117 0.883 37 H 0.161 0.839 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.067 0.933 41 H 0.130 0.870 42 H 0.096 0.904 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.851 -23.449 9.615 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.337 5.337 10 C 0.048 3.952 11 C -0.171 4.171 12 C -0.147 4.147 13 C 0.040 3.960 14 H 0.068 0.932 15 C 0.005 3.995 16 N -0.358 5.358 17 C 0.268 3.732 18 O -0.469 6.469 19 C -0.014 4.014 20 N -0.339 5.339 21 C -0.023 4.023 22 C -0.160 4.160 23 C -0.187 4.187 24 C 0.291 3.709 25 O -0.471 6.471 26 H 0.058 0.942 27 H 0.009 0.991 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.128 0.872 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.040 0.960 35 H 0.256 0.744 36 H 0.135 0.865 37 H 0.179 0.821 38 H 0.091 0.909 39 H 0.131 0.869 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.114 0.886 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.105 -22.408 9.804 24.986 hybrid contribution 0.275 1.816 -0.338 1.868 sum 5.380 -20.592 9.466 23.293 Atomic orbital electron populations 1.70124 1.06181 1.25526 1.57306 1.25656 0.96524 1.00901 1.01993 0.85290 0.77412 0.79388 0.78100 1.19850 1.21533 1.21229 1.19232 0.90613 0.83830 1.43641 0.91010 1.44752 1.07032 1.02166 1.79702 1.21280 0.83949 0.93702 0.96279 1.22912 0.99772 0.95053 0.99404 1.22636 0.94863 0.97258 0.99937 1.21366 0.96272 0.86867 0.91528 0.93198 1.21631 0.94848 0.84383 0.98671 1.45823 1.58923 1.19533 1.11535 1.22094 0.78332 0.90468 0.82270 1.90695 1.58590 1.51579 1.46032 1.21398 1.02375 0.94483 0.83172 1.48082 1.16502 1.61297 1.07994 1.22421 0.94485 1.00328 0.85049 1.22634 0.92470 1.03466 0.97481 1.22354 1.00458 1.06003 0.89865 1.21858 0.81294 0.75167 0.92532 1.90691 1.43460 1.46766 1.66169 0.94208 0.99100 0.94639 0.89739 0.91103 0.87245 0.91501 0.94540 0.96036 0.74397 0.86484 0.82136 0.90864 0.86920 0.91453 0.85229 0.88578 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.72 10.58 21.65 0.23 -57.49 16 2 C -0.06 -3.32 5.47 84.86 0.46 -2.85 16 3 Si 0.97 47.61 29.55 68.60 2.03 49.64 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.24 -14.00 9.72 84.03 0.82 -13.18 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.61 -31.23 3.13 -668.27 -2.09 -33.32 16 10 C 0.17 8.43 5.42 86.86 0.47 8.90 16 11 C -0.13 -4.49 7.09 32.07 0.23 -4.26 16 12 C -0.11 -3.17 6.22 31.87 0.20 -2.97 16 13 C 0.15 5.64 3.19 45.34 0.14 5.79 16 14 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 15 C 0.13 5.23 5.10 86.38 0.44 5.67 16 16 N -0.70 -19.84 5.36 -463.05 -2.48 -22.32 16 17 C 0.48 14.61 7.90 87.66 0.69 15.30 16 18 O -0.59 -24.67 16.43 -3.03 -0.05 -24.72 16 19 C 0.11 2.13 6.42 85.63 0.55 2.68 16 20 N -0.61 -12.72 2.42 -822.34 -1.99 -14.71 16 21 C 0.10 1.23 7.35 86.83 0.64 1.87 16 22 C -0.12 -1.34 7.18 31.65 0.23 -1.12 16 23 C -0.15 -2.29 6.86 30.59 0.21 -2.08 16 24 C 0.50 13.21 8.02 87.90 0.71 13.92 16 25 O -0.59 -21.68 17.59 -3.07 -0.05 -21.73 16 26 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 27 H -0.01 -0.49 8.06 -2.39 -0.02 -0.51 16 28 H 0.04 1.95 6.94 -2.39 -0.02 1.94 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.07 1.92 7.78 -2.38 -0.02 1.90 16 33 H 0.04 1.64 8.03 -2.39 -0.02 1.62 16 34 H 0.02 1.03 7.86 -2.39 -0.02 1.01 16 35 H 0.42 7.90 8.39 -92.71 -0.78 7.12 16 36 H 0.12 2.16 7.92 -2.39 -0.02 2.14 16 37 H 0.16 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.13 0.43 8.14 -2.38 -0.02 0.41 16 42 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 43 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -88.33 352.96 1.60 -86.73 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.22 Total: 10.27 kcal Atomic # 6 Polarization: 21.88 SS G_CDS: 5.78 Total: 27.67 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -6.33 Total: -127.85 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -0.10 Total: -46.45 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -88.33 1.60 -86.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493075962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.122 kcal (2) G-P(sol) polarization free energy of solvation -88.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds