Wall clock time and date at job start Tue Mar 31 2020 03:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 120.00019 * 2 1 4 4 H 1.48495 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46777 * 299.99551 * 3 2 1 6 6 H 1.48499 * 109.46985 * 59.99388 * 3 2 1 7 7 C 1.38946 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00210 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00061 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99703 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00064 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47001 * 180.02562 * 12 10 9 14 14 C 1.48559 * 110.99865 * 290.12419 * 13 12 10 15 15 C 1.54390 * 104.59452 * 200.96084 * 14 13 12 16 16 C 1.54257 * 105.05828 * 23.85392 * 15 14 13 17 17 H 1.08999 * 110.32395 * 241.00145 * 16 15 14 18 18 C 1.53001 * 110.32604 * 118.89670 * 16 15 14 19 19 N 1.46496 * 109.46891 * 66.44954 * 18 16 15 20 20 C 1.34779 * 120.00061 * 180.02562 * 19 18 16 21 21 O 1.21282 * 119.99904 * 0.02562 * 20 19 18 22 22 C 1.50706 * 120.00112 * 180.02562 * 20 19 18 23 23 C 1.53002 * 117.49668 * 180.02562 * 22 20 19 24 24 C 1.53000 * 60.02940 * 252.51929 * 23 22 20 25 25 C 1.48566 * 111.00127 * 174.70803 * 13 12 10 26 26 H 0.97000 * 119.99881 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00344 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47168 * 59.99980 * 12 10 9 29 29 H 1.09003 * 109.47042 * 300.00214 * 12 10 9 30 30 H 1.08998 * 110.41525 * 82.18197 * 14 13 12 31 31 H 1.09003 * 110.51317 * 319.78871 * 14 13 12 32 32 H 1.08995 * 110.32305 * 264.95939 * 15 14 13 33 33 H 1.08999 * 110.40799 * 142.79417 * 15 14 13 34 34 H 1.09003 * 109.46663 * 306.45612 * 18 16 15 35 35 H 1.08997 * 109.47688 * 186.45058 * 18 16 15 36 36 H 0.97005 * 120.00693 * 0.02562 * 19 18 16 37 37 H 1.09000 * 115.55924 * 325.68624 * 22 20 19 38 38 H 1.09002 * 117.49918 * 145.01964 * 23 22 20 39 39 H 1.09002 * 117.49754 * 0.02562 * 23 22 20 40 40 H 1.09008 * 117.49673 * 107.47884 * 24 23 22 41 41 H 1.08999 * 117.49942 * 252.47315 * 24 23 22 42 42 H 1.08999 * 110.41190 * 40.25926 * 25 13 12 43 43 H 1.09000 * 110.40652 * 277.82100 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2102 -3.5578 0.0031 12 6 1.2438 -4.8629 0.0032 13 7 2.1984 -5.9794 0.0050 14 6 2.9081 -6.0751 -1.2967 15 6 3.4280 -7.5279 -1.3504 16 6 2.4981 -8.3214 -0.4096 17 1 3.0709 -8.7597 0.4076 18 6 1.7621 -9.4142 -1.1873 19 7 2.7250 -10.4162 -1.6511 20 6 2.3013 -11.4789 -2.3636 21 8 1.1229 -11.6054 -2.6211 22 6 3.2917 -12.5099 -2.8402 23 6 2.7484 -13.6925 -3.6448 24 6 3.2240 -13.9012 -2.2056 25 6 1.4947 -7.2815 0.1335 26 1 -0.4850 0.8401 -0.0004 27 1 0.3534 -2.3907 0.0016 28 1 0.6175 -4.9213 -0.8869 29 1 0.6168 -4.9200 0.8930 30 1 3.7404 -5.3721 -1.3285 31 1 2.2206 -5.8866 -2.1213 32 1 4.4569 -7.5751 -0.9940 33 1 3.3614 -7.9180 -2.3660 34 1 1.2566 -8.9715 -2.0456 35 1 1.0270 -9.8899 -0.5382 36 1 3.6676 -10.3149 -1.4455 37 1 4.2757 -12.1270 -3.1109 38 1 3.3751 -14.0877 -4.4443 39 1 1.6746 -13.7245 -3.8297 40 1 2.4631 -14.0703 -1.4436 41 1 4.1634 -14.4341 -2.0583 42 1 0.5844 -7.2824 -0.4661 43 1 1.2627 -7.4866 1.1786 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493169751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:38 Heat of formation + Delta-G solvation = -45.508956 kcal Electronic energy + Delta-G solvation = -23049.395794 eV Core-core repulsion = 19516.103117 eV Total energy + Delta-G solvation = -3533.292677 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30737 -39.22715 -37.74556 -36.53487 -35.08841 -33.87775 -32.06439 -31.16611 -29.40543 -27.42270 -25.78133 -24.21340 -23.40728 -22.81864 -21.33926 -20.47733 -20.02411 -19.07802 -17.88649 -17.69716 -16.62244 -16.12423 -15.74497 -15.54195 -15.18152 -14.79512 -14.57079 -14.45667 -14.18565 -13.73345 -13.41353 -13.18683 -12.89808 -12.63868 -12.34578 -12.00585 -11.92918 -11.85829 -11.48297 -11.34812 -11.16171 -11.03765 -10.97929 -10.90161 -10.82079 -10.51736 -10.33686 -10.21832 -10.11500 -9.49387 -9.33301 -8.50297 -8.02451 -7.93474 -6.40740 -3.81473 2.20954 2.82490 3.16765 3.27154 3.34351 3.47117 3.91703 4.02608 4.24150 4.29849 4.39340 4.47631 4.57304 4.67398 4.69212 4.79337 5.09237 5.17992 5.22641 5.25924 5.32606 5.35760 5.40256 5.51324 5.54426 5.64387 5.72376 5.74400 5.78978 5.82376 5.90688 6.08403 6.13450 6.22869 6.28918 6.44284 7.11198 7.21191 7.22637 7.56266 7.95378 8.07512 8.63063 9.19346 9.55817 10.07711 10.77178 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.050097 B = 0.002204 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.782454 B =12700.181951 C =12849.965547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.446 3.554 11 O -0.578 6.578 12 C 0.034 3.966 13 N -0.484 5.484 14 C 0.037 3.963 15 C -0.122 4.122 16 C -0.103 4.103 17 H 0.087 0.913 18 C 0.127 3.873 19 N -0.723 5.723 20 C 0.541 3.459 21 O -0.542 6.542 22 C -0.196 4.196 23 C -0.148 4.148 24 C -0.153 4.153 25 C 0.038 3.962 26 H 0.271 0.729 27 H 0.392 0.608 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.403 0.597 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.045 0.955 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.281 -23.918 -3.859 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.231 3.769 11 O -0.462 6.462 12 C -0.098 4.098 13 N -0.208 5.208 14 C -0.091 4.091 15 C -0.160 4.160 16 C -0.122 4.122 17 H 0.105 0.895 18 C 0.003 3.997 19 N -0.374 5.374 20 C 0.327 3.673 21 O -0.420 6.420 22 C -0.218 4.218 23 C -0.186 4.186 24 C -0.190 4.190 25 C -0.091 4.091 26 H 0.080 0.920 27 H 0.225 0.775 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.237 0.763 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.064 0.936 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.470 -23.701 -3.585 24.384 hybrid contribution -0.408 0.984 -0.523 1.187 sum 4.063 -22.717 -4.109 23.440 Atomic orbital electron populations 1.69621 1.05928 1.28014 1.50808 1.25265 0.95644 0.99720 0.97436 0.85801 0.79691 0.81170 0.77682 1.19236 1.20802 1.20761 1.19741 0.93367 0.82197 1.47381 0.87880 1.41871 1.09185 1.04590 1.64627 1.19695 0.88382 0.84491 0.84356 1.90497 1.13676 1.86991 1.55033 1.22061 0.94283 0.91748 1.01693 1.65155 1.23409 1.00322 1.31881 1.23152 0.99667 0.96530 0.89729 1.22436 0.99565 0.95193 0.98775 1.22124 0.97144 0.94748 0.98227 0.89499 1.21477 0.91396 0.88342 0.98467 1.45930 1.11795 1.24052 1.55651 1.19674 0.88578 0.81572 0.77478 1.90707 1.17880 1.76527 1.56857 1.22224 1.00827 0.90211 1.08492 1.22957 1.02893 0.98290 0.94435 1.22953 1.03725 0.95194 0.97165 1.23101 0.95236 0.89501 1.01293 0.91950 0.77510 0.93204 0.89242 0.88245 0.94488 0.90828 0.91428 0.91294 0.91282 0.76278 0.85782 0.87882 0.87395 0.88244 0.87727 0.93635 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.57 -14.44 5.29 -10.97 -0.06 -14.50 16 10 C 0.45 10.58 7.59 -10.99 -0.08 10.50 16 11 O -0.58 -15.62 14.42 5.55 0.08 -15.54 16 12 C 0.03 0.61 5.30 -4.98 -0.03 0.59 16 13 N -0.48 -7.97 5.06 -231.41 -1.17 -9.14 16 14 C 0.04 0.58 5.80 -2.18 -0.01 0.56 16 15 C -0.12 -1.36 6.33 -25.34 -0.16 -1.52 16 16 C -0.10 -1.03 3.13 -89.24 -0.28 -1.31 16 17 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 18 C 0.13 1.24 4.76 -4.04 -0.02 1.22 16 19 N -0.72 -6.18 5.32 -60.29 -0.32 -6.50 16 20 C 0.54 5.59 7.61 -10.98 -0.08 5.50 16 21 O -0.54 -7.83 16.26 5.56 0.09 -7.74 16 22 C -0.20 -1.40 6.19 -91.73 -0.57 -1.97 16 23 C -0.15 -1.01 10.04 -26.73 -0.27 -1.28 16 24 C -0.15 -0.91 10.24 -26.70 -0.27 -1.18 16 25 C 0.04 0.46 6.03 -2.18 -0.01 0.45 16 26 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 28 H 0.05 0.83 7.89 -51.93 -0.41 0.42 16 29 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 30 H 0.10 1.86 6.91 -51.93 -0.36 1.50 16 31 H 0.04 0.57 7.83 -51.93 -0.41 0.17 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.68 7.63 -51.93 -0.40 0.29 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 2.48 8.32 -40.82 -0.34 2.14 16 37 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.11 0.92 7.67 -51.93 -0.40 0.52 16 40 H 0.10 0.67 8.14 -51.92 -0.42 0.24 16 41 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.53 7.72 -51.93 -0.40 0.13 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -33.61 357.18 -9.09 -42.70 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.77 Total: 9.66 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -2.03 Total: 3.54 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.83 Total: -54.12 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.17 Total: -23.28 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.61 -9.09 -42.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493169751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.807 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds