Wall clock time and date at job start Tue Mar 31 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47039 * 295.00296 * 11 10 9 13 13 N 1.46505 * 109.47110 * 54.99768 * 11 10 9 14 14 C 1.34776 * 120.00083 * 205.00120 * 13 11 10 15 15 O 1.21276 * 120.00028 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99673 * 180.02562 * 14 13 11 17 17 H 1.08997 * 109.66983 * 299.99919 * 16 14 13 18 18 C 1.53344 * 109.66959 * 179.50011 * 16 14 13 19 19 C 1.52922 * 108.67217 * 172.72991 * 18 16 14 20 20 N 1.45761 * 110.48492 * 50.75944 * 19 18 16 21 21 C 1.33352 * 124.10274 * 340.93820 * 20 19 18 22 22 O 1.21288 * 118.24534 * 182.18094 * 21 20 19 23 23 C 1.50191 * 123.52412 * 2.14898 * 21 20 19 24 24 C 1.53002 * 109.47334 * 174.99477 * 11 10 9 25 25 C 1.52993 * 117.50098 * 248.62377 * 24 11 10 26 26 C 1.52995 * 117.49954 * 179.97438 * 24 11 10 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 30 30 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 31 31 H 0.97006 * 119.99476 * 25.00066 * 13 11 10 32 32 H 1.08997 * 109.60987 * 292.49313 * 18 16 14 33 33 H 1.09003 * 109.60142 * 52.81977 * 18 16 14 34 34 H 1.09002 * 109.29762 * 171.06283 * 19 18 16 35 35 H 1.08991 * 109.30552 * 290.65232 * 19 18 16 36 36 H 0.96997 * 117.94813 * 160.92409 * 20 19 18 37 37 H 1.09000 * 109.44628 * 222.36804 * 23 21 20 38 38 H 1.08997 * 109.36217 * 102.62603 * 23 21 20 39 39 H 1.09006 * 115.54809 * 34.33587 * 24 11 10 40 40 H 1.08996 * 117.50086 * 0.02562 * 25 24 11 41 41 H 1.09007 * 117.49681 * 145.02006 * 25 24 11 42 42 H 1.08999 * 117.50446 * 214.98197 * 26 24 11 43 43 H 1.09005 * 117.49767 * 0.02562 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.4971 -4.8138 0.9289 13 7 0.1446 -4.6758 -1.1340 14 6 -1.0799 -5.2366 -1.0833 15 8 -1.4211 -5.8600 -0.1005 16 6 -2.0251 -5.0890 -2.2477 17 1 -2.2288 -4.0327 -2.4232 18 6 -3.3361 -5.8244 -1.9448 19 6 -4.3410 -5.5106 -3.0539 20 7 -3.7455 -5.7459 -4.3634 21 6 -2.4326 -5.8168 -4.5858 22 8 -2.0514 -5.9770 -5.7261 23 6 -1.4003 -5.7083 -3.5003 24 6 1.8246 -6.1412 -0.1281 25 6 1.6646 -6.9271 -1.4309 26 6 1.0019 -7.4310 -0.1467 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 2.6853 -3.7142 -0.8912 30 1 2.6841 -3.7150 0.8887 31 1 0.4174 -4.1768 -1.9199 32 1 -3.1535 -6.8983 -1.9099 33 1 -3.7302 -5.4890 -0.9854 34 1 -5.2174 -6.1481 -2.9370 35 1 -4.6432 -4.4659 -2.9814 36 1 -4.3416 -5.8581 -5.1203 37 1 -0.5779 -5.0804 -3.8430 38 1 -1.0206 -6.7019 -3.2621 39 1 2.7974 -6.1721 0.3626 40 1 1.0178 -6.5026 -2.1986 41 1 2.5325 -7.4752 -1.7978 42 1 1.4338 -8.3104 0.3309 43 1 -0.0815 -7.3381 -0.0698 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670458494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:23 Heat of formation + Delta-G solvation = -40.978701 kcal Electronic energy + Delta-G solvation = -24762.930657 eV Core-core repulsion = 21229.834426 eV Total energy + Delta-G solvation = -3533.096231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91614 -39.75674 -37.51710 -36.28466 -35.16261 -33.76961 -33.13719 -31.14248 -29.85390 -28.05314 -25.48210 -23.90274 -23.34122 -22.36455 -21.75214 -20.67743 -19.78304 -19.42351 -17.76458 -17.36518 -16.96579 -16.61273 -16.09479 -15.72120 -15.49889 -14.77418 -14.57645 -14.47828 -14.14693 -13.74064 -13.66812 -13.63618 -13.20795 -12.89234 -12.42365 -12.10198 -11.91017 -11.65347 -11.56619 -11.33269 -11.28330 -11.23456 -10.75901 -10.66202 -10.40334 -10.22725 -10.02888 -9.79340 -9.51511 -9.34181 -9.23031 -8.96851 -8.80025 -7.08951 -6.16331 -3.17195 2.42271 2.65074 3.03821 3.21735 3.48918 3.52055 3.69495 3.96143 4.24666 4.38087 4.46493 4.50839 4.59708 4.82074 4.98443 4.99960 5.05089 5.08907 5.11077 5.28211 5.39662 5.43687 5.52915 5.54003 5.65506 5.72434 5.76766 5.86346 5.88544 5.91433 6.07685 6.19522 6.36204 6.40855 6.50500 6.56927 6.78320 7.05864 7.65172 7.74622 7.97549 8.31575 8.69586 9.14841 10.01591 10.15843 11.31649 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.004654 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.465162 B = 6015.110022 C = 7182.283905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.334 4.334 8 H 0.065 0.935 9 N -0.742 5.742 10 C 0.153 3.847 11 C 0.167 3.833 12 H 0.091 0.909 13 N -0.708 5.708 14 C 0.521 3.479 15 O -0.538 6.538 16 C -0.115 4.115 17 H 0.109 0.891 18 C -0.116 4.116 19 C 0.108 3.892 20 N -0.720 5.720 21 C 0.526 3.474 22 O -0.557 6.557 23 C -0.127 4.127 24 C -0.161 4.161 25 C -0.178 4.178 26 C -0.186 4.186 27 H 0.254 0.746 28 H 0.368 0.632 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.405 0.595 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.400 0.600 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.774 -14.576 -5.051 16.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.241 4.241 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.388 5.388 10 C 0.025 3.975 11 C 0.062 3.938 12 H 0.109 0.891 13 N -0.358 5.358 14 C 0.307 3.693 15 O -0.415 6.415 16 C -0.136 4.136 17 H 0.127 0.873 18 C -0.154 4.154 19 C -0.016 4.016 20 N -0.372 5.372 21 C 0.313 3.687 22 O -0.435 6.435 23 C -0.167 4.167 24 C -0.180 4.180 25 C -0.215 4.215 26 C -0.223 4.223 27 H 0.065 0.935 28 H 0.202 0.798 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.240 0.760 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.235 0.765 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.561 -13.388 -4.717 15.245 hybrid contribution -0.058 -1.427 -0.504 1.514 sum -5.619 -14.815 -5.221 16.682 Atomic orbital electron populations 1.70902 1.06044 1.28306 1.53466 1.25779 0.97019 1.01000 1.00252 0.83240 0.74233 0.75567 0.75894 1.21034 1.22244 1.22228 1.20017 0.92057 0.85701 1.48702 0.91702 1.42332 1.04947 1.00714 1.90843 1.20849 0.92952 0.84556 0.99125 1.20785 0.90219 0.92979 0.89807 0.89147 1.46051 1.14569 1.54305 1.20869 1.20272 0.82126 0.78701 0.88167 1.90627 1.75910 1.41387 1.33614 1.21482 0.95607 1.03081 0.93452 0.87261 1.21704 0.93088 1.01539 0.99034 1.21482 0.96319 1.01895 0.81898 1.45489 1.07012 1.73234 1.11507 1.19980 0.83400 0.75367 0.89986 1.90779 1.79726 1.50031 1.22972 1.21676 0.97993 1.04449 0.92584 1.22677 1.00831 0.92383 1.02142 1.22918 1.03080 1.03978 0.91566 1.23328 1.01458 0.96776 1.00743 0.93514 0.79819 0.95447 0.94754 0.75969 0.90303 0.88418 0.90008 0.91071 0.76520 0.87392 0.87654 0.87257 0.89016 0.89399 0.89702 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.40 13.70 55.49 0.76 -27.64 16 2 C -0.04 -1.21 5.50 -17.43 -0.10 -1.31 16 3 Si 1.08 25.41 29.92 -169.99 -5.09 20.32 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.33 -9.14 9.99 -15.06 -0.15 -9.29 16 8 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.74 -17.74 5.43 -59.91 -0.33 -18.06 16 10 C 0.15 2.90 5.80 -4.05 -0.02 2.88 16 11 C 0.17 2.64 2.59 -67.93 -0.18 2.46 16 12 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 13 N -0.71 -10.03 2.97 -53.80 -0.16 -10.19 16 14 C 0.52 7.10 5.96 -10.98 -0.07 7.04 16 15 O -0.54 -8.65 12.92 5.56 0.07 -8.58 16 16 C -0.11 -1.22 2.60 -91.56 -0.24 -1.45 16 17 H 0.11 1.17 8.13 -51.93 -0.42 0.75 16 18 C -0.12 -1.03 4.71 -26.59 -0.13 -1.16 16 19 C 0.11 0.75 7.17 -4.48 -0.03 0.72 16 20 N -0.72 -6.35 5.45 -61.38 -0.33 -6.68 16 21 C 0.53 6.19 7.71 -11.86 -0.09 6.10 16 22 O -0.56 -8.79 17.78 5.55 0.10 -8.69 16 23 C -0.13 -1.31 5.04 -28.10 -0.14 -1.45 16 24 C -0.16 -2.17 5.71 -90.62 -0.52 -2.68 16 25 C -0.18 -2.15 9.73 -26.71 -0.26 -2.41 16 26 C -0.19 -2.41 9.82 -26.71 -0.26 -2.67 16 27 H 0.25 7.53 6.77 -40.82 -0.28 7.25 16 28 H 0.37 9.07 6.17 -40.82 -0.25 8.81 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.41 5.63 8.33 -40.82 -0.34 5.29 16 32 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.10 0.93 7.89 -51.93 -0.41 0.52 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.40 3.05 8.80 -40.82 -0.36 2.69 16 37 H 0.11 1.10 7.94 -51.93 -0.41 0.69 16 38 H 0.11 1.04 7.76 -51.93 -0.40 0.64 16 39 H 0.11 1.39 8.11 -51.93 -0.42 0.97 16 40 H 0.09 1.09 6.17 -51.93 -0.32 0.77 16 41 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.12 1.70 5.02 -51.93 -0.26 1.44 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -33.92 345.32 -8.39 -42.30 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -6.44 Total: 15.25 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.18 Total: -3.24 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.06 Total: -62.58 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.17 Total: -17.27 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.09 Total: 20.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.92 -8.39 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670458494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.324 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds