Wall clock time and date at job start Tue Mar 31 2020 03:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46734 * 65.00048 * 11 10 9 13 13 N 1.46499 * 109.47128 * 305.00135 * 11 10 9 14 14 C 1.34776 * 119.99869 * 155.00256 * 13 11 10 15 15 O 1.21271 * 120.00237 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99577 * 179.97438 * 14 13 11 17 17 H 1.08992 * 109.67200 * 300.49300 * 16 14 13 18 18 C 1.53350 * 109.67365 * 179.97438 * 16 14 13 19 19 C 1.52917 * 108.67673 * 172.73718 * 18 16 14 20 20 N 1.45754 * 110.48793 * 50.75304 * 19 18 16 21 21 C 1.33353 * 124.10585 * 340.90342 * 20 19 18 22 22 O 1.21285 * 118.24699 * 182.26965 * 21 20 19 23 23 C 1.50184 * 123.50728 * 2.26759 * 21 20 19 24 24 C 1.52998 * 109.47197 * 184.99768 * 11 10 9 25 25 C 1.53003 * 117.49844 * 248.74846 * 24 11 10 26 26 C 1.53003 * 117.49790 * 180.08781 * 24 11 10 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 30 30 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 31 31 H 0.97002 * 119.99759 * 334.99491 * 13 11 10 32 32 H 1.09002 * 109.60273 * 292.49386 * 18 16 14 33 33 H 1.08996 * 109.60257 * 52.81441 * 18 16 14 34 34 H 1.08991 * 109.30219 * 171.06537 * 19 18 16 35 35 H 1.09001 * 109.29624 * 290.64615 * 19 18 16 36 36 H 0.96996 * 117.94527 * 160.92845 * 20 19 18 37 37 H 1.09005 * 109.38689 * 222.25607 * 23 21 20 38 38 H 1.09000 * 109.41196 * 102.51927 * 23 21 20 39 39 H 1.09004 * 115.55046 * 34.41823 * 24 11 10 40 40 H 1.08996 * 117.50023 * 0.02562 * 25 24 11 41 41 H 1.09000 * 117.49785 * 145.02613 * 25 24 11 42 42 H 1.08994 * 117.49958 * 214.97799 * 26 24 11 43 43 H 1.08997 * 117.50110 * 359.97438 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.4979 -4.8134 -0.9339 13 7 0.1438 -4.6763 1.1288 14 6 -1.0806 -5.2372 1.0769 15 8 -1.4210 -5.8602 0.0937 16 6 -2.0267 -5.0901 2.2407 17 1 -1.5752 -5.5158 3.1367 18 6 -3.3425 -5.8144 1.9311 19 6 -4.2127 -5.8076 3.1885 20 7 -4.3193 -4.4577 3.7278 21 6 -3.4756 -3.4671 3.4361 22 8 -3.6398 -2.3948 3.9785 23 6 -2.3330 -3.6083 2.4717 24 6 1.8245 -6.1412 0.1234 25 6 1.8344 -7.0690 -1.0931 26 6 1.0018 -7.4312 0.1393 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 2.6853 -3.7142 -0.8912 30 1 2.6841 -3.7150 0.8887 31 1 0.4160 -4.1778 1.9152 32 1 -3.8625 -5.2989 1.1237 33 1 -3.1331 -6.8419 1.6339 34 1 -5.2080 -6.1758 2.9398 35 1 -3.7652 -6.4583 3.9398 36 1 -5.0496 -4.2681 4.3375 37 1 -1.4509 -3.1158 2.8812 38 1 -2.5993 -3.1413 1.5235 39 1 2.7230 -6.1096 0.7397 40 1 1.2994 -6.7379 -1.9831 41 1 2.7394 -7.6483 -1.2769 42 1 1.3594 -8.2483 0.7657 43 1 -0.0813 -7.3384 0.0607 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670458506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:24 Heat of formation + Delta-G solvation = -43.795449 kcal Electronic energy + Delta-G solvation = -24688.378580 eV Core-core repulsion = 21155.160206 eV Total energy + Delta-G solvation = -3533.218374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74892 -39.57638 -37.50261 -36.20810 -35.23970 -33.77865 -33.10647 -31.05745 -29.74336 -27.93558 -25.36082 -23.84478 -23.24437 -22.22957 -21.76903 -20.55297 -20.11871 -19.31545 -17.64362 -17.36099 -16.88011 -16.42117 -16.05623 -15.41687 -15.34123 -15.08382 -14.42233 -14.28097 -14.19837 -13.70342 -13.60459 -13.47114 -13.19870 -12.94856 -12.35284 -12.01191 -11.89927 -11.66191 -11.37971 -11.28113 -11.17494 -11.11395 -10.72042 -10.61980 -10.26759 -10.15411 -10.08003 -9.95211 -9.44810 -9.23830 -9.19845 -8.92932 -8.76717 -7.05308 -6.11175 -3.13011 2.60194 2.69384 3.15075 3.20558 3.52224 3.55528 3.73600 4.00727 4.34654 4.50307 4.54222 4.58782 4.63218 4.81885 5.01157 5.06200 5.07621 5.12159 5.18042 5.29238 5.41073 5.56845 5.57686 5.66982 5.67686 5.75957 5.78774 5.82061 5.94894 5.97663 6.05752 6.25774 6.37293 6.40693 6.56295 6.64235 6.80455 7.18827 7.69353 7.78148 8.14751 8.35473 8.73892 9.18584 10.05332 10.19387 11.36318 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.010274 B = 0.005833 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.736766 B = 4799.185243 C = 7233.429937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.042 4.042 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.337 4.337 8 H 0.064 0.936 9 N -0.742 5.742 10 C 0.154 3.846 11 C 0.167 3.833 12 H 0.087 0.913 13 N -0.706 5.706 14 C 0.522 3.478 15 O -0.541 6.541 16 C -0.110 4.110 17 H 0.102 0.898 18 C -0.117 4.117 19 C 0.111 3.889 20 N -0.725 5.725 21 C 0.525 3.475 22 O -0.548 6.548 23 C -0.128 4.128 24 C -0.163 4.163 25 C -0.171 4.171 26 C -0.184 4.184 27 H 0.254 0.746 28 H 0.368 0.632 29 H 0.036 0.964 30 H 0.025 0.975 31 H 0.404 0.596 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 -17.472 5.858 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.240 4.240 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.468 4.468 8 H 0.082 0.918 9 N -0.388 5.388 10 C 0.026 3.974 11 C 0.062 3.938 12 H 0.105 0.895 13 N -0.356 5.356 14 C 0.308 3.692 15 O -0.420 6.420 16 C -0.132 4.132 17 H 0.121 0.879 18 C -0.155 4.155 19 C -0.013 4.013 20 N -0.378 5.378 21 C 0.312 3.688 22 O -0.425 6.425 23 C -0.168 4.168 24 C -0.183 4.183 25 C -0.208 4.208 26 C -0.221 4.221 27 H 0.065 0.935 28 H 0.202 0.798 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.239 0.761 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.431 -15.710 5.264 17.151 hybrid contribution -0.024 -1.507 0.563 1.609 sum -4.455 -17.217 5.827 18.715 Atomic orbital electron populations 1.70910 1.06000 1.28364 1.53014 1.25777 0.97029 1.00984 1.00177 0.83246 0.74228 0.75661 0.75811 1.21005 1.22251 1.22298 1.19985 0.91997 0.85668 1.49137 0.91756 1.42320 1.04921 1.00676 1.90880 1.20846 0.92907 0.84583 0.99087 1.20836 0.90197 0.92926 0.89830 0.89481 1.46024 1.14509 1.54212 1.20820 1.20280 0.82103 0.78585 0.88204 1.90613 1.76207 1.41660 1.33495 1.21449 0.96306 0.96941 0.98486 0.87945 1.21711 0.93732 1.02852 0.97174 1.21415 1.01002 0.83110 0.95766 1.45507 1.31562 1.11208 1.49492 1.20048 0.83242 0.83417 0.82142 1.90805 1.73426 1.26340 1.51958 1.21675 0.98395 0.95683 1.01031 1.22637 1.01508 0.91361 1.02787 1.22897 1.02060 1.03110 0.92761 1.23258 1.00598 0.97413 1.00867 0.93459 0.79833 0.94661 0.95686 0.76092 0.90078 0.88754 0.90192 0.91569 0.76663 0.87103 0.87133 0.87879 0.88765 0.89163 0.89875 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.82 13.70 55.49 0.76 -28.06 16 2 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 3 Si 1.08 25.91 29.92 -169.99 -5.09 20.82 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.34 -9.32 9.99 -15.06 -0.15 -9.47 16 8 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.74 -17.90 5.43 -59.91 -0.33 -18.23 16 10 C 0.15 2.94 5.80 -4.05 -0.02 2.92 16 11 C 0.17 2.66 2.43 -67.93 -0.17 2.49 16 12 H 0.09 1.59 7.34 -51.93 -0.38 1.21 16 13 N -0.71 -10.18 4.41 -53.81 -0.24 -10.42 16 14 C 0.52 7.22 6.46 -10.98 -0.07 7.15 16 15 O -0.54 -8.77 12.93 5.57 0.07 -8.70 16 16 C -0.11 -1.19 2.60 -91.56 -0.24 -1.43 16 17 H 0.10 0.91 8.13 -51.93 -0.42 0.49 16 18 C -0.12 -1.06 4.71 -26.59 -0.13 -1.19 16 19 C 0.11 0.78 7.17 -4.49 -0.03 0.74 16 20 N -0.72 -7.11 5.45 -61.39 -0.33 -7.44 16 21 C 0.52 7.31 7.71 -11.87 -0.09 7.22 16 22 O -0.55 -10.27 17.78 5.55 0.10 -10.17 16 23 C -0.13 -1.69 5.21 -28.10 -0.15 -1.84 16 24 C -0.16 -2.19 5.36 -90.62 -0.49 -2.68 16 25 C -0.17 -2.14 10.18 -26.69 -0.27 -2.41 16 26 C -0.18 -2.33 9.74 -26.69 -0.26 -2.59 16 27 H 0.25 7.68 6.77 -40.82 -0.28 7.41 16 28 H 0.37 9.17 6.17 -40.82 -0.25 8.92 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.40 5.66 8.37 -40.82 -0.34 5.32 16 32 H 0.08 0.86 8.12 -51.93 -0.42 0.43 16 33 H 0.09 0.81 7.90 -51.93 -0.41 0.40 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.40 3.43 8.80 -40.82 -0.36 3.07 16 37 H 0.11 1.55 7.97 -51.93 -0.41 1.14 16 38 H 0.11 1.64 8.09 -51.93 -0.42 1.22 16 39 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 40 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.12 1.68 5.02 -51.93 -0.26 1.42 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -34.75 349.32 -8.49 -43.23 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -6.54 Total: 16.07 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.16 Total: -2.37 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.14 Total: -64.15 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.17 Total: -18.87 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.09 Total: 20.82 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.75 -8.49 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670458506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.564 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds