Wall clock time and date at job start Tue Mar 31 2020 03:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46734 * 65.00048 * 11 10 9 13 13 N 1.46499 * 109.47128 * 305.00135 * 11 10 9 14 14 C 1.34776 * 119.99869 * 155.00256 * 13 11 10 15 15 O 1.21271 * 120.00237 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99577 * 179.97438 * 14 13 11 17 17 H 1.08992 * 109.67200 * 300.49300 * 16 14 13 18 18 C 1.53350 * 109.67365 * 179.97438 * 16 14 13 19 19 C 1.52917 * 108.67673 * 172.73718 * 18 16 14 20 20 N 1.45754 * 110.48793 * 50.75304 * 19 18 16 21 21 C 1.33353 * 124.10585 * 340.90342 * 20 19 18 22 22 O 1.21285 * 118.24699 * 182.26965 * 21 20 19 23 23 C 1.50184 * 123.50728 * 2.26759 * 21 20 19 24 24 C 1.52998 * 109.47197 * 184.99768 * 11 10 9 25 25 C 1.53003 * 117.49844 * 248.74846 * 24 11 10 26 26 C 1.53003 * 117.49790 * 180.08781 * 24 11 10 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 30 30 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 31 31 H 0.97002 * 119.99759 * 334.99491 * 13 11 10 32 32 H 1.09002 * 109.60273 * 292.49386 * 18 16 14 33 33 H 1.08996 * 109.60257 * 52.81441 * 18 16 14 34 34 H 1.08991 * 109.30219 * 171.06537 * 19 18 16 35 35 H 1.09001 * 109.29624 * 290.64615 * 19 18 16 36 36 H 0.96996 * 117.94527 * 160.92845 * 20 19 18 37 37 H 1.09005 * 109.38689 * 222.25607 * 23 21 20 38 38 H 1.09000 * 109.41196 * 102.51927 * 23 21 20 39 39 H 1.09004 * 115.55046 * 34.41823 * 24 11 10 40 40 H 1.08996 * 117.50023 * 0.02562 * 25 24 11 41 41 H 1.09000 * 117.49785 * 145.02613 * 25 24 11 42 42 H 1.08994 * 117.49958 * 214.97799 * 26 24 11 43 43 H 1.08997 * 117.50110 * 359.97438 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.4979 -4.8134 -0.9339 13 7 0.1438 -4.6763 1.1288 14 6 -1.0806 -5.2372 1.0769 15 8 -1.4210 -5.8602 0.0937 16 6 -2.0267 -5.0901 2.2407 17 1 -1.5752 -5.5158 3.1367 18 6 -3.3425 -5.8144 1.9311 19 6 -4.2127 -5.8076 3.1885 20 7 -4.3193 -4.4577 3.7278 21 6 -3.4756 -3.4671 3.4361 22 8 -3.6398 -2.3948 3.9785 23 6 -2.3330 -3.6083 2.4717 24 6 1.8245 -6.1412 0.1234 25 6 1.8344 -7.0690 -1.0931 26 6 1.0018 -7.4312 0.1393 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 2.6853 -3.7142 -0.8912 30 1 2.6841 -3.7150 0.8887 31 1 0.4160 -4.1778 1.9152 32 1 -3.8625 -5.2989 1.1237 33 1 -3.1331 -6.8419 1.6339 34 1 -5.2080 -6.1758 2.9398 35 1 -3.7652 -6.4583 3.9398 36 1 -5.0496 -4.2681 4.3375 37 1 -1.4509 -3.1158 2.8812 38 1 -2.5993 -3.1413 1.5235 39 1 2.7230 -6.1096 0.7397 40 1 1.2994 -6.7379 -1.9831 41 1 2.7394 -7.6483 -1.2769 42 1 1.3594 -8.2483 0.7657 43 1 -0.0813 -7.3384 0.0607 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670458506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:24 Heat of formation + Delta-G solvation = -70.036062 kcal Electronic energy + Delta-G solvation = -24689.516459 eV Core-core repulsion = 21155.160206 eV Total energy + Delta-G solvation = -3534.356253 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.82003 -40.73299 -38.68375 -37.25476 -36.87340 -35.20038 -34.20008 -32.83021 -30.70439 -29.52089 -26.43307 -25.68140 -24.26304 -23.38548 -23.16157 -21.69367 -21.31270 -20.22296 -19.40373 -18.61470 -18.04780 -17.56375 -17.12823 -16.81966 -16.51098 -16.26480 -15.79294 -15.57898 -15.40764 -15.20998 -14.92529 -14.63248 -14.49026 -14.36392 -13.75822 -12.97671 -12.91541 -12.86851 -12.74855 -12.60034 -12.43912 -12.32340 -12.13271 -12.07386 -11.90769 -11.43281 -11.38271 -11.23313 -11.04251 -10.96839 -10.57771 -10.10510 -9.99485 -9.13037 -8.38225 -5.33881 1.48313 1.55983 1.58633 1.68246 1.84539 2.08003 2.26361 2.70826 2.97513 3.39675 3.41563 3.49737 3.56958 3.66408 3.72144 3.86114 4.04737 4.10039 4.12323 4.20513 4.29619 4.38243 4.39804 4.56721 4.58804 4.69744 4.79142 4.81237 4.84530 4.98141 5.02148 5.04081 5.19869 5.25540 5.35281 5.51507 5.59809 5.81646 6.23171 6.49131 6.52304 7.07241 7.13367 7.20477 7.97893 8.08536 9.12640 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.010274 B = 0.005833 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.736766 B = 4799.185243 C = 7233.429937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.101 4.101 3 Si 1.126 2.874 4 H -0.297 1.297 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.334 4.334 8 H 0.069 0.931 9 N -0.752 5.752 10 C 0.155 3.845 11 C 0.179 3.821 12 H 0.059 0.941 13 N -0.707 5.707 14 C 0.521 3.479 15 O -0.565 6.565 16 C -0.097 4.097 17 H 0.132 0.868 18 C -0.115 4.115 19 C 0.112 3.888 20 N -0.707 5.707 21 C 0.525 3.475 22 O -0.606 6.606 23 C -0.123 4.123 24 C -0.168 4.168 25 C -0.168 4.168 26 C -0.174 4.174 27 H 0.242 0.758 28 H 0.361 0.639 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.406 0.594 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.408 0.592 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 -19.797 6.907 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.293 4.293 3 Si 0.951 3.049 4 H -0.223 1.223 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.466 4.466 8 H 0.087 0.913 9 N -0.397 5.397 10 C 0.028 3.972 11 C 0.074 3.926 12 H 0.077 0.923 13 N -0.356 5.356 14 C 0.308 3.692 15 O -0.444 6.444 16 C -0.118 4.118 17 H 0.150 0.850 18 C -0.153 4.153 19 C -0.011 4.011 20 N -0.358 5.358 21 C 0.312 3.688 22 O -0.488 6.488 23 C -0.164 4.164 24 C -0.188 4.188 25 C -0.206 4.206 26 C -0.211 4.211 27 H 0.053 0.947 28 H 0.193 0.807 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.242 0.758 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.244 0.756 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.136 0.864 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.691 -18.135 6.314 19.554 hybrid contribution -0.241 -0.900 0.176 0.948 sum -3.933 -19.035 6.490 20.492 Atomic orbital electron populations 1.71020 1.07222 1.27777 1.55979 1.27141 0.97042 1.04600 1.00503 0.82647 0.73362 0.71699 0.77166 1.22347 1.20173 1.20442 1.20348 0.92415 0.86893 1.46896 0.91305 1.42486 1.04784 1.01676 1.90795 1.20969 0.93425 0.83677 0.99123 1.20524 0.89569 0.93215 0.89298 0.92295 1.46021 1.14821 1.54398 1.20379 1.20774 0.81947 0.77789 0.88687 1.90607 1.76514 1.42733 1.34578 1.21447 0.96736 0.95385 0.98254 0.84975 1.21733 0.92749 1.02915 0.97867 1.21705 1.02567 0.81519 0.95300 1.45460 1.30316 1.11548 1.48459 1.20051 0.83642 0.83396 0.81735 1.90776 1.74990 1.28766 1.54264 1.21527 0.97920 0.97291 0.99620 1.22531 1.01959 0.90146 1.04123 1.22981 1.02847 1.02700 0.92051 1.23226 0.99564 0.97217 1.01074 0.94720 0.80690 0.95002 0.94464 0.75822 0.91976 0.87426 0.87156 0.88500 0.75588 0.88439 0.89638 0.86422 0.90139 0.86830 0.87567 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.50 13.70 21.65 0.30 -61.20 16 2 C -0.10 -5.89 5.50 84.86 0.47 -5.42 16 3 Si 1.13 52.39 29.92 68.60 2.05 54.44 16 4 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.33 -18.57 9.99 84.03 0.84 -17.73 16 8 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 9 N -0.75 -36.99 5.43 -343.47 -1.87 -38.86 16 10 C 0.15 5.91 5.80 86.38 0.50 6.41 16 11 C 0.18 5.71 2.43 44.99 0.11 5.82 16 12 H 0.06 2.22 7.34 -2.39 -0.02 2.20 16 13 N -0.71 -20.42 4.41 -442.54 -1.95 -22.37 16 14 C 0.52 14.30 6.46 87.66 0.57 14.87 16 15 O -0.56 -18.31 12.93 -3.00 -0.04 -18.34 16 16 C -0.10 -1.99 2.60 -11.40 -0.03 -2.02 16 17 H 0.13 1.98 8.13 -2.39 -0.02 1.96 16 18 C -0.11 -1.86 4.71 30.68 0.14 -1.71 16 19 C 0.11 1.16 7.17 86.49 0.62 1.78 16 20 N -0.71 -12.58 5.45 -467.32 -2.55 -15.12 16 21 C 0.52 14.74 7.71 87.72 0.68 15.42 16 22 O -0.61 -23.56 17.78 -3.05 -0.05 -23.62 16 23 C -0.12 -3.38 5.21 29.71 0.15 -3.22 16 24 C -0.17 -4.24 5.36 -10.79 -0.06 -4.30 16 25 C -0.17 -3.91 10.18 30.62 0.31 -3.60 16 26 C -0.17 -4.02 9.74 30.62 0.30 -3.72 16 27 H 0.24 15.33 6.77 -92.71 -0.63 14.70 16 28 H 0.36 18.70 6.17 -92.71 -0.57 18.13 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.41 11.42 8.37 -92.71 -0.78 10.64 16 32 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 33 H 0.11 1.54 7.90 -2.39 -0.02 1.52 16 34 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.41 6.23 8.80 -92.71 -0.82 5.41 16 37 H 0.10 2.90 7.97 -2.38 -0.02 2.88 16 38 H 0.09 2.76 8.09 -2.39 -0.02 2.75 16 39 H 0.12 2.67 8.11 -2.38 -0.02 2.65 16 40 H 0.08 2.10 8.05 -2.39 -0.02 2.08 16 41 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.10 2.73 5.02 -2.39 -0.01 2.72 16 Total: -1.00 -77.76 349.32 -0.48 -78.24 By element: Atomic # 1 Polarization: 45.24 SS G_CDS: -0.97 Total: 44.27 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 4.60 Total: 2.57 kcal Atomic # 7 Polarization: -131.48 SS G_CDS: -6.07 Total: -137.55 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.09 Total: -41.96 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.44 kcal Total: -77.76 -0.48 -78.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670458506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.208 kcal (2) G-P(sol) polarization free energy of solvation -77.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds