Wall clock time and date at job start Tue Mar 31 2020 03:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99727 * 3 2 1 5 5 H 1.48497 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00009 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47422 * 125.64800 * 359.96776 * 9 7 2 11 11 C 1.55136 * 104.72050 * 155.81448 * 10 9 7 12 12 C 1.55163 * 101.48333 * 37.29811 * 11 10 9 13 13 H 1.09004 * 110.71688 * 82.69573 * 12 11 10 14 14 C 1.52995 * 110.71726 * 205.96911 * 12 11 10 15 15 N 1.46502 * 109.47048 * 179.97438 * 14 12 11 16 16 C 1.34770 * 120.00253 * 180.02562 * 15 14 12 17 17 O 1.21284 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00325 * 179.97438 * 16 15 14 19 19 C 1.53002 * 109.47224 * 179.97438 * 18 16 15 20 20 H 1.08997 * 110.43242 * 54.30246 * 19 18 16 21 21 C 1.54634 * 110.48512 * 176.84465 * 19 18 16 22 22 C 1.54685 * 101.66837 * 143.39429 * 21 19 18 23 23 N 1.46767 * 105.53637 * 334.73851 * 22 21 19 24 24 C 1.34418 * 111.29642 * 16.92207 * 23 22 21 25 25 O 1.21281 * 124.93842 * 179.62785 * 24 23 22 26 26 C 1.47020 * 125.64411 * 180.27542 * 9 7 2 27 27 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 28 28 H 1.08991 * 110.36917 * 274.74799 * 10 9 7 29 29 H 1.09000 * 110.36516 * 37.07108 * 10 9 7 30 30 H 1.08995 * 111.19563 * 279.19409 * 11 10 9 31 31 H 1.08999 * 110.93742 * 155.28819 * 11 10 9 32 32 H 1.09002 * 109.47223 * 299.97333 * 14 12 11 33 33 H 1.08997 * 109.47409 * 59.97364 * 14 12 11 34 34 H 0.97003 * 119.99945 * 359.97438 * 15 14 12 35 35 H 1.08997 * 109.47387 * 299.99883 * 18 16 15 36 36 H 1.09000 * 109.46568 * 59.99897 * 18 16 15 37 37 H 1.08998 * 110.96460 * 261.59803 * 21 19 18 38 38 H 1.08998 * 110.96975 * 25.35719 * 21 19 18 39 39 H 1.09002 * 110.29494 * 215.67561 * 22 21 19 40 40 H 1.09004 * 110.21173 * 93.75825 * 22 21 19 41 41 H 0.96994 * 124.35095 * 196.90393 * 23 22 21 42 42 H 1.08991 * 109.88560 * 300.44049 * 26 9 7 43 43 H 1.09002 * 109.88176 * 61.61346 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1414 -2.5331 0.0140 11 6 -0.4019 -3.9356 -0.5959 12 6 0.7786 -4.7526 -0.0071 13 1 0.5466 -5.0928 1.0022 14 6 1.1228 -5.9362 -0.9133 15 7 2.2390 -6.6870 -0.3330 16 6 2.7170 -7.7783 -0.9630 17 8 2.2228 -8.1392 -2.0101 18 6 3.8655 -8.5503 -0.3664 19 6 4.2098 -9.7341 -1.2726 20 1 4.3974 -9.3922 -2.2904 21 6 5.4372 -10.4973 -0.7230 22 6 5.0700 -11.9623 -1.0570 23 7 3.6043 -11.9939 -1.1275 24 6 3.0949 -10.7565 -1.2544 25 8 1.9133 -10.4973 -1.3410 26 6 1.9320 -3.7274 0.0138 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5225 -2.4837 1.0339 29 1 -0.6020 -1.7607 -0.6018 30 1 -0.3528 -3.9073 -1.6844 31 1 -1.3590 -4.3347 -0.2602 32 1 0.2545 -6.5887 -1.0044 33 1 1.4060 -5.5685 -1.8995 34 1 2.6346 -6.3982 0.5043 35 1 4.7337 -7.8976 -0.2753 36 1 3.5825 -8.9183 0.6198 37 1 6.3482 -10.1939 -1.2390 38 1 5.5348 -10.3557 0.3533 39 1 5.4243 -12.6295 -0.2711 40 1 5.5000 -12.2490 -2.0167 41 1 3.0718 -12.8036 -1.0879 42 1 2.5579 -3.8556 -0.8692 43 1 2.5288 -3.8593 0.9163 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691145944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:55 Heat of formation + Delta-G solvation = -51.039073 kcal Electronic energy + Delta-G solvation = -23689.096496 eV Core-core repulsion = 20155.564014 eV Total energy + Delta-G solvation = -3533.532481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77307 -39.17552 -37.53495 -36.46879 -34.49947 -33.21527 -32.41317 -29.97126 -29.22233 -28.11975 -26.25605 -25.14409 -23.29760 -22.25017 -20.84311 -20.13927 -19.74984 -19.35314 -17.57105 -17.15129 -16.88144 -16.50957 -15.77460 -15.51422 -14.81096 -14.74815 -14.55676 -13.94144 -13.83388 -13.68719 -13.46148 -13.03735 -12.79251 -12.65707 -12.46379 -12.07137 -11.81111 -11.68724 -11.57512 -11.40491 -11.31831 -10.92994 -10.77169 -10.35419 -10.12582 -9.96696 -9.87226 -9.78408 -9.57849 -9.40142 -9.32733 -8.75184 -8.62953 -6.80862 -5.62951 -3.04890 2.53154 2.90323 3.11413 3.35633 3.41485 3.45418 3.47069 4.04555 4.10148 4.36021 4.50519 4.63581 4.85645 4.96261 5.09749 5.11209 5.23008 5.33973 5.35582 5.37035 5.46544 5.47170 5.56968 5.72821 5.77802 5.96883 6.18515 6.22215 6.40288 6.57588 6.59293 6.62365 6.65857 6.79426 6.80713 6.97145 7.54742 7.64409 7.73309 7.88693 8.16353 8.39418 8.49273 9.24376 9.85534 10.50886 11.40792 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.034427 B = 0.002668 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.115776 B =10493.674358 C =11105.612431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.136 4.136 12 C -0.115 4.115 13 H 0.075 0.925 14 C 0.135 3.865 15 N -0.730 5.730 16 C 0.506 3.494 17 O -0.520 6.520 18 C -0.125 4.125 19 C -0.109 4.109 20 H 0.116 0.884 21 C -0.131 4.131 22 C 0.102 3.898 23 N -0.743 5.743 24 C 0.518 3.482 25 O -0.499 6.499 26 C 0.142 3.858 27 H 0.252 0.748 28 H 0.012 0.988 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.398 0.602 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.408 0.592 42 H 0.024 0.976 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.360 -23.341 0.929 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.093 0.907 14 C 0.012 3.988 15 N -0.382 5.382 16 C 0.291 3.709 17 O -0.395 6.395 18 C -0.166 4.166 19 C -0.131 4.131 20 H 0.134 0.866 21 C -0.169 4.169 22 C -0.022 4.022 23 N -0.401 5.401 24 C 0.303 3.697 25 O -0.372 6.372 26 C 0.016 3.984 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.246 0.754 42 H 0.042 0.958 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.364 -23.098 0.095 25.317 hybrid contribution 0.570 0.539 0.584 0.978 sum 10.933 -22.559 0.679 25.078 Atomic orbital electron populations 1.69783 1.04896 1.24871 1.57584 1.24792 0.95730 0.97726 1.02495 0.86147 0.78391 0.83067 0.77854 1.21167 1.21570 1.21258 1.19031 0.90447 0.82541 1.43117 0.90612 1.44513 1.02035 0.99751 1.86809 1.21981 0.84651 0.92524 0.98143 1.23044 0.95598 0.98576 1.00276 1.22443 0.98213 0.94053 0.98678 0.90698 1.21382 0.88441 0.92030 0.96976 1.46022 1.36550 1.28700 1.26893 1.20372 0.84457 0.80653 0.85403 1.90745 1.59190 1.66827 1.22742 1.21536 0.98587 0.96561 0.99879 1.21722 0.94386 0.94465 1.02510 0.86578 1.22759 0.97952 0.93570 1.02623 1.22042 0.80504 0.97805 1.01899 1.46257 1.08171 1.09048 1.76580 1.20747 0.89606 0.84027 0.75358 1.90836 1.16801 1.82102 1.47417 1.21315 0.93530 0.85945 0.97580 0.93676 0.97037 0.87530 0.91838 0.92189 0.91835 0.91496 0.76786 0.87823 0.88869 0.88855 0.89644 0.90373 0.91188 0.75411 0.95781 0.96525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.20 10.09 55.49 0.56 -26.64 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.61 -15.69 3.39 -169.93 -0.58 -16.27 16 10 C 0.15 3.74 5.90 -2.41 -0.01 3.73 16 11 C -0.14 -2.63 6.54 -24.46 -0.16 -2.79 16 12 C -0.11 -2.00 3.01 -88.78 -0.27 -2.26 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 14 C 0.14 2.17 4.99 -4.04 -0.02 2.15 16 15 N -0.73 -10.01 5.40 -60.30 -0.33 -10.34 16 16 C 0.51 7.22 7.28 -10.99 -0.08 7.14 16 17 O -0.52 -9.69 13.86 -16.80 -0.23 -9.92 16 18 C -0.13 -1.14 5.10 -27.88 -0.14 -1.29 16 19 C -0.11 -0.97 2.55 -90.63 -0.23 -1.20 16 20 H 0.12 1.14 7.96 -51.93 -0.41 0.72 16 21 C -0.13 -0.58 6.72 -24.99 -0.17 -0.75 16 22 C 0.10 0.44 7.79 -3.01 -0.02 0.42 16 23 N -0.74 -5.77 6.24 -59.09 -0.37 -6.14 16 24 C 0.52 6.20 7.70 -10.86 -0.08 6.11 16 25 O -0.50 -8.68 15.39 -16.79 -0.26 -8.94 16 26 C 0.14 2.94 6.52 -3.06 -0.02 2.92 16 27 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.11 2.96 5.87 -51.93 -0.30 2.65 16 30 H 0.06 1.23 8.05 -51.93 -0.42 0.82 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 34 H 0.40 4.51 8.33 -40.82 -0.34 4.17 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 0.30 7.91 -51.93 -0.41 -0.12 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.41 2.67 8.96 -40.82 -0.37 2.30 16 42 H 0.02 0.51 7.76 -51.93 -0.40 0.10 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -36.99 345.58 -9.33 -46.32 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.85 Total: 2.24 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -1.46 Total: 7.31 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.71 Total: -59.39 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.49 Total: -18.86 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.99 -9.33 -46.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691145944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.723 kcal (2) G-P(sol) polarization free energy of solvation -36.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds