Wall clock time and date at job start Tue Mar 31 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 110.43190 * 2 1 4 4 O 1.21287 * 119.99941 * 118.91911 * 3 2 1 5 5 N 1.34773 * 120.00322 * 298.91651 * 3 2 1 6 6 C 1.46500 * 120.00513 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47529 * 180.02562 * 6 5 3 8 8 H 1.09002 * 110.64246 * 51.85475 * 7 6 5 9 9 C 1.55156 * 110.72190 * 174.99806 * 7 6 5 10 10 C 1.54909 * 101.58520 * 153.86355 * 9 7 6 11 11 N 1.47428 * 104.83177 * 322.99367 * 10 9 7 12 12 C 1.36934 * 125.64941 * 204.09213 * 11 10 9 13 13 H 1.08005 * 119.99945 * 168.09556 * 12 11 10 14 14 C 1.38808 * 120.00062 * 348.09168 * 12 11 10 15 15 N 1.31616 * 120.00209 * 325.98205 * 14 12 11 16 16 Si 1.86797 * 120.00020 * 145.97635 * 14 12 11 17 17 H 1.48505 * 109.46896 * 60.00699 * 16 14 12 18 18 H 1.48501 * 109.47246 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47334 * 300.00799 * 16 14 12 20 20 C 1.47022 * 108.70213 * 24.35224 * 11 10 9 21 21 C 1.54632 * 110.60453 * 122.61811 * 2 1 3 22 22 C 1.54479 * 101.76242 * 143.53254 * 21 2 1 23 23 N 1.46765 * 105.47389 * 334.58642 * 22 21 2 24 24 C 1.34417 * 111.30314 * 17.01622 * 23 22 21 25 25 O 1.21278 * 124.94115 * 179.62751 * 24 23 22 26 26 H 1.08994 * 109.47416 * 59.29780 * 1 2 3 27 27 H 1.08998 * 109.46682 * 179.30133 * 1 2 3 28 28 H 1.09003 * 109.46901 * 299.29214 * 1 2 3 29 29 H 0.97001 * 120.00166 * 0.02562 * 5 3 2 30 30 H 1.09004 * 109.47069 * 59.99532 * 6 5 3 31 31 H 1.08998 * 109.46883 * 300.00413 * 6 5 3 32 32 H 1.09008 * 111.00201 * 35.78931 * 9 7 6 33 33 H 1.09000 * 111.00349 * 271.93995 * 9 7 6 34 34 H 1.08995 * 110.37269 * 204.15531 * 10 9 7 35 35 H 1.09004 * 110.36332 * 81.82771 * 10 9 7 36 36 H 0.97004 * 119.99808 * 354.25074 * 15 14 12 37 37 H 1.09001 * 109.88532 * 118.13560 * 20 11 10 38 38 H 1.09005 * 109.88581 * 239.29838 * 20 11 10 39 39 H 1.08992 * 110.97024 * 261.64861 * 21 2 1 40 40 H 1.09002 * 110.96285 * 25.41520 * 21 2 1 41 41 H 1.09000 * 110.24255 * 215.58651 * 22 21 2 42 42 H 1.09001 * 110.31989 * 93.62660 * 22 21 2 43 43 H 0.97001 * 124.34630 * 196.99482 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7438 1.8032 0.9194 5 7 1.7625 2.2408 -1.0216 6 6 2.2744 3.6134 -1.0219 7 6 1.7982 4.3351 -2.2842 8 1 0.7181 4.2406 -2.3965 9 6 2.2185 5.8284 -2.2544 10 6 2.2838 6.1634 -3.7654 11 7 2.8205 4.9452 -4.3992 12 6 3.4798 4.8937 -5.5982 13 1 4.0017 3.9940 -5.8893 14 6 3.4772 5.9976 -6.4397 15 7 2.4202 6.7798 -6.4960 16 14 4.9741 6.3732 -7.4922 17 1 5.2392 5.2295 -8.4017 18 1 4.7203 7.5962 -8.2953 19 1 6.1528 6.5925 -6.6161 20 6 2.5251 3.7942 -3.5335 21 6 2.0742 -0.7802 1.2191 22 6 3.3234 -1.4655 0.6224 23 7 3.0582 -1.5784 -0.8167 24 6 2.0594 -0.7622 -1.1947 25 8 1.6428 -0.6532 -2.3285 26 1 -0.3634 0.5247 -0.8836 27 1 -0.3632 -1.0276 -0.0125 28 1 -0.3633 0.5028 0.8963 29 1 1.2123 1.9283 -1.7568 30 1 3.3641 3.5949 -1.0027 31 1 1.9045 4.1393 -0.1418 32 1 3.1946 5.9502 -1.7846 33 1 1.4661 6.4360 -1.7516 34 1 2.9520 7.0069 -3.9385 35 1 1.2872 6.3828 -4.1487 36 1 1.6132 6.5399 -6.0142 37 1 1.8839 3.0882 -4.0613 38 1 3.4532 3.3052 -3.2374 39 1 2.3498 -0.1008 2.0256 40 1 1.3508 -1.5193 1.5636 41 1 3.4562 -2.4548 1.0602 42 1 4.2094 -0.8548 0.7959 43 1 3.5419 -2.1663 -1.4179 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691159447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:58 Heat of formation + Delta-G solvation = -54.798367 kcal Electronic energy + Delta-G solvation = -24502.881796 eV Core-core repulsion = 20969.186300 eV Total energy + Delta-G solvation = -3533.695497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44304 -39.12389 -37.84335 -36.60358 -34.81187 -33.57512 -32.55489 -29.82179 -29.10115 -28.39383 -25.99286 -25.27267 -23.81220 -22.40540 -21.77023 -20.44237 -19.93978 -19.25037 -17.81713 -17.57835 -17.36263 -16.17361 -15.73168 -15.57924 -15.02012 -14.62392 -14.31220 -14.13602 -13.92877 -13.83130 -13.60724 -13.15863 -13.06674 -12.84983 -12.65714 -12.54783 -12.22378 -11.80294 -11.69939 -11.57251 -11.46800 -10.75092 -10.59300 -10.42867 -10.34317 -10.19732 -10.09621 -9.95801 -9.82190 -9.57512 -9.43745 -9.07490 -8.29596 -6.92207 -6.11893 -3.03986 2.07315 2.47872 2.97627 3.16291 3.53899 3.58666 3.76231 3.84907 4.03134 4.33054 4.59290 4.64405 4.65962 4.93073 5.00697 5.11377 5.14653 5.22816 5.28973 5.31772 5.34437 5.50406 5.60465 5.65144 5.72234 5.73618 5.91988 5.95280 6.15529 6.24604 6.38941 6.39895 6.42318 6.63949 6.65732 6.81781 7.00730 7.06732 7.40611 7.84110 7.89130 8.05206 8.52814 9.05050 9.86344 10.42359 11.22971 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.003539 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.755933 B = 7909.821951 C = 8444.585336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.533 3.467 4 O -0.535 6.535 5 N -0.714 5.714 6 C 0.132 3.868 7 C -0.115 4.115 8 H 0.078 0.922 9 C -0.125 4.125 10 C 0.145 3.855 11 N -0.602 5.602 12 C -0.343 4.343 13 H 0.066 0.934 14 C -0.022 4.022 15 N -0.909 5.909 16 Si 1.056 2.944 17 H -0.293 1.293 18 H -0.286 1.286 19 H -0.294 1.294 20 C 0.142 3.858 21 C -0.117 4.117 22 C 0.099 3.901 23 N -0.728 5.728 24 C 0.530 3.470 25 O -0.513 6.513 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.408 0.592 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.024 0.976 36 H 0.268 0.732 37 H 0.022 0.978 38 H 0.025 0.975 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 -15.768 18.386 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.128 4.128 3 C 0.317 3.683 4 O -0.413 6.413 5 N -0.365 5.365 6 C 0.009 3.991 7 C -0.134 4.134 8 H 0.097 0.903 9 C -0.164 4.164 10 C 0.019 3.981 11 N -0.330 5.330 12 C -0.470 4.470 13 H 0.084 0.916 14 C -0.224 4.224 15 N -0.549 5.549 16 Si 0.886 3.114 17 H -0.220 1.220 18 H -0.211 1.211 19 H -0.222 1.222 20 C 0.016 3.984 21 C -0.155 4.155 22 C -0.026 4.026 23 N -0.384 5.384 24 C 0.313 3.687 25 O -0.387 6.387 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.244 0.756 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.043 0.957 39 H 0.128 0.872 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.079 -14.248 17.323 22.526 hybrid contribution -0.651 -1.698 0.400 1.863 sum -2.730 -15.947 17.723 23.997 Atomic orbital electron populations 1.21676 0.89509 1.03677 1.03752 1.21644 0.99671 0.94276 0.97159 1.19642 0.80305 0.85890 0.82478 1.90687 1.38290 1.76572 1.35708 1.46078 1.53336 1.13414 1.23675 1.21483 0.99368 0.80170 0.98056 1.22443 1.00285 0.96530 0.94152 0.90317 1.22789 1.00806 0.93687 0.99137 1.21500 0.97306 0.91022 0.88280 1.44593 1.67356 1.00617 1.20400 1.19698 1.28357 1.03215 0.95753 0.91627 1.25638 1.02382 0.95818 0.98586 1.70793 1.01530 1.43130 1.39432 0.83657 0.75979 0.76117 0.75691 1.22039 1.21128 1.22185 1.21333 0.96049 0.91258 0.89718 1.22703 0.96643 0.99296 0.96847 1.22143 0.98882 1.01690 0.79846 1.46142 1.37071 1.44113 1.11082 1.20327 0.79809 0.79703 0.88826 1.90814 1.60942 1.65838 1.21102 0.90842 0.90969 0.90739 0.75650 0.91092 0.91259 0.91359 0.91555 0.92899 0.95864 0.92145 0.96051 0.95695 0.87168 0.89141 0.89790 0.90422 0.74686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 8.33 37.16 0.31 -0.76 16 2 C -0.12 -1.24 0.74 -155.67 -0.12 -1.35 16 3 C 0.53 7.08 6.55 -10.99 -0.07 7.01 16 4 O -0.54 -8.28 15.46 5.55 0.09 -8.20 16 5 N -0.71 -9.86 5.32 -60.29 -0.32 -10.18 16 6 C 0.13 1.96 5.02 -4.04 -0.02 1.94 16 7 C -0.11 -1.94 2.95 -88.78 -0.26 -2.20 16 8 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 9 C -0.13 -2.23 6.54 -24.58 -0.16 -2.39 16 10 C 0.14 3.41 5.34 -2.53 -0.01 3.39 16 11 N -0.60 -15.84 3.33 -170.06 -0.57 -16.40 16 12 C -0.34 -10.08 9.97 -15.06 -0.15 -10.23 16 13 H 0.07 1.95 8.02 -52.48 -0.42 1.53 16 14 C -0.02 -0.65 4.95 -17.43 -0.09 -0.74 16 15 N -0.91 -27.95 12.87 55.49 0.71 -27.24 16 16 Si 1.06 26.00 30.03 -169.99 -5.10 20.90 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 C 0.14 3.09 6.76 -3.06 -0.02 3.07 16 21 C -0.12 -0.86 6.05 -25.10 -0.15 -1.01 16 22 C 0.10 0.67 7.78 -3.12 -0.02 0.65 16 23 N -0.73 -6.59 6.24 -59.20 -0.37 -6.96 16 24 C 0.53 6.42 7.08 -10.86 -0.08 6.34 16 25 O -0.51 -8.09 17.69 5.56 0.10 -8.00 16 26 H 0.07 0.68 7.70 -51.93 -0.40 0.28 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.41 5.58 7.81 -40.82 -0.32 5.26 16 30 H 0.07 1.15 7.94 -51.93 -0.41 0.74 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.19 8.05 -51.92 -0.42 0.77 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.05 1.36 7.82 -51.93 -0.41 0.96 16 35 H 0.02 0.58 7.03 -51.93 -0.36 0.22 16 36 H 0.27 8.26 6.45 -40.82 -0.26 8.00 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.03 0.56 7.69 -51.93 -0.40 0.16 16 39 H 0.11 0.89 6.91 -51.93 -0.36 0.53 16 40 H 0.09 0.45 7.92 -51.93 -0.41 0.04 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.41 3.13 8.96 -40.82 -0.37 2.76 16 LS Contribution 347.75 15.07 5.24 5.24 Total: -1.00 -35.67 347.75 -7.78 -43.46 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.72 Total: 3.67 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.84 Total: 3.71 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.54 Total: -60.78 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.18 Total: -16.19 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.10 Total: 20.90 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.67 -7.78 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691159447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.341 kcal (2) G-P(sol) polarization free energy of solvation -35.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds