Wall clock time and date at job start Tue Mar 31 2020 03:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86807 * 119.99646 * 2 1 4 4 H 1.48504 * 109.46811 * 270.00219 * 3 2 1 5 5 H 1.48497 * 109.47108 * 30.00320 * 3 2 1 6 6 H 1.48505 * 109.46998 * 150.00318 * 3 2 1 7 7 C 1.38805 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99859 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00312 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 2 11 11 H 1.09011 * 112.84848 * 23.80466 * 10 9 7 12 12 C 1.53777 * 113.61672 * 155.00116 * 10 9 7 13 13 C 1.53781 * 87.08172 * 139.98325 * 12 10 9 14 14 H 1.08997 * 113.61493 * 89.20586 * 13 12 10 15 15 C 1.52998 * 113.61411 * 220.01877 * 13 12 10 16 16 N 1.46501 * 109.47216 * 183.47191 * 15 13 12 17 17 C 1.34780 * 120.00225 * 180.02562 * 16 15 13 18 18 O 1.21276 * 119.99633 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00039 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47030 * 179.97438 * 19 17 16 21 21 H 1.09000 * 110.43799 * 303.91099 * 20 19 17 22 22 C 1.54628 * 110.48632 * 181.22877 * 20 19 17 23 23 C 1.54663 * 101.68539 * 216.30874 * 22 20 19 24 24 N 1.46766 * 105.38117 * 25.77156 * 23 22 20 25 25 C 1.34426 * 111.29916 * 342.58270 * 24 23 22 26 26 O 1.21278 * 124.94275 * 180.69504 * 25 24 23 27 27 C 1.53776 * 87.17282 * 334.61050 * 13 12 10 28 28 H 0.97004 * 119.99806 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99741 * 0.02562 * 9 7 2 30 30 H 1.09003 * 113.61385 * 25.43288 * 12 10 9 31 31 H 1.08997 * 113.61618 * 254.53608 * 12 10 9 32 32 H 1.09000 * 109.47132 * 63.47528 * 15 13 12 33 33 H 1.08997 * 109.47734 * 303.47188 * 15 13 12 34 34 H 0.97000 * 119.99761 * 359.97438 * 16 15 13 35 35 H 1.09004 * 109.47372 * 60.00135 * 19 17 16 36 36 H 1.09003 * 109.47287 * 299.99742 * 19 17 16 37 37 H 1.09002 * 110.97177 * 334.64102 * 22 20 19 38 38 H 1.08994 * 110.97175 * 98.37096 * 22 20 19 39 39 H 1.08999 * 110.40049 * 266.74034 * 23 22 20 40 40 H 1.09001 * 110.18102 * 144.67906 * 23 22 20 41 41 H 0.97001 * 124.35394 * 162.85956 * 24 23 22 42 42 H 1.09005 * 113.61388 * 139.94258 * 27 13 12 43 43 H 1.09000 * 113.61520 * 270.83699 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1123 -2.4707 -0.0011 11 1 3.5278 -3.2969 -0.4061 12 6 5.5260 -2.3657 -0.5971 13 6 5.9849 -3.3090 0.5274 14 1 5.9144 -4.3651 0.2674 15 6 7.3419 -2.9340 1.1263 16 7 7.7278 -3.9335 2.1255 17 6 8.8944 -3.8080 2.7886 18 8 9.6249 -2.8678 2.5578 19 6 9.2916 -4.8364 3.8160 20 6 10.6485 -4.4613 4.4150 21 1 11.3960 -4.3570 3.6285 22 6 11.0936 -5.5190 5.4515 23 6 11.7943 -4.6406 6.5142 24 7 11.1812 -3.3131 6.3879 25 6 10.5389 -3.1816 5.2144 26 8 9.9565 -2.1824 4.8494 27 6 4.7878 -2.7943 1.3440 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3620 -0.0007 30 1 5.9548 -1.3658 -0.5305 31 1 5.6131 -2.7992 -1.5934 32 1 7.2718 -1.9548 1.6002 33 1 8.0917 -2.9022 0.3359 34 1 7.1433 -4.6852 2.3103 35 1 9.3623 -5.8153 3.3417 36 1 8.5416 -4.8689 4.6064 37 1 10.2328 -6.0373 5.8741 38 1 11.7946 -6.2271 5.0099 39 1 12.8642 -4.5826 6.3138 40 1 11.6180 -5.0441 7.5113 41 1 11.2360 -2.6184 7.0627 42 1 4.2798 -3.5734 1.9125 43 1 5.0144 -1.9119 1.9423 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691446980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:43 Heat of formation + Delta-G solvation = -42.197467 kcal Electronic energy + Delta-G solvation = -23305.698959 eV Core-core repulsion = 19772.549879 eV Total energy + Delta-G solvation = -3533.149081 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85550 -39.42677 -38.39096 -36.51966 -34.64198 -33.34607 -33.19015 -30.74674 -29.51241 -27.68544 -25.70060 -25.14611 -23.53310 -22.31986 -21.00405 -20.81722 -19.84559 -19.20133 -17.61904 -17.38596 -17.16438 -16.79648 -16.02055 -15.39539 -15.16444 -14.71153 -14.59599 -14.12880 -14.06165 -13.81798 -13.61931 -13.17525 -13.02522 -12.77703 -12.63690 -12.28752 -12.06822 -11.92610 -11.85525 -11.55606 -11.49885 -11.40776 -10.85862 -10.43752 -10.27450 -10.11865 -9.92859 -9.76348 -9.60223 -9.48596 -9.37554 -8.91493 -8.85245 -7.23891 -5.76222 -3.11375 2.48674 2.76449 3.07021 3.20409 3.40846 3.44844 3.48298 3.96761 4.01127 4.27499 4.54125 4.61074 4.76723 4.86337 4.91240 4.95698 5.02257 5.06950 5.15244 5.22576 5.28788 5.36017 5.43586 5.48403 5.63166 5.70986 5.79998 5.86837 5.95005 6.22090 6.27766 6.29686 6.50254 6.54975 6.57141 6.74537 6.76176 7.03236 7.57301 8.00380 8.12282 8.35741 8.43801 9.21868 9.94869 10.14889 11.42009 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026653 B = 0.002603 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.286046 B =10754.060163 C =11214.000073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.172 3.828 11 H 0.084 0.916 12 C -0.145 4.145 13 C -0.126 4.126 14 H 0.090 0.910 15 C 0.134 3.866 16 N -0.730 5.730 17 C 0.504 3.496 18 O -0.515 6.515 19 C -0.125 4.125 20 C -0.109 4.109 21 H 0.115 0.885 22 C -0.131 4.131 23 C 0.102 3.898 24 N -0.743 5.743 25 C 0.516 3.484 26 O -0.496 6.496 27 C -0.161 4.161 28 H 0.259 0.741 29 H 0.363 0.637 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.398 0.602 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.408 0.592 42 H 0.057 0.943 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.743 -16.850 11.832 32.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.377 5.377 10 C 0.060 3.940 11 H 0.102 0.898 12 C -0.185 4.185 13 C -0.145 4.145 14 H 0.108 0.892 15 C 0.011 3.989 16 N -0.383 5.383 17 C 0.289 3.711 18 O -0.390 6.390 19 C -0.165 4.165 20 C -0.131 4.131 21 H 0.133 0.867 22 C -0.169 4.169 23 C -0.023 4.023 24 N -0.401 5.401 25 C 0.300 3.700 26 O -0.368 6.368 27 C -0.202 4.202 28 H 0.069 0.931 29 H 0.196 0.804 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.231 0.769 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.247 0.753 42 H 0.076 0.924 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 25.658 -15.718 11.335 32.154 hybrid contribution 0.359 1.086 0.565 1.276 sum 26.017 -14.632 11.900 32.134 Atomic orbital electron populations 1.69707 1.05117 1.25855 1.57456 1.24693 0.95269 0.97282 1.01928 0.86559 0.79313 0.84922 0.77834 1.21017 1.21710 1.20222 1.19137 0.80720 0.94740 1.43083 0.89152 1.42772 1.04079 1.02087 1.88774 1.21543 0.89529 0.89970 0.92922 0.89839 1.23456 0.98894 0.99057 0.97110 1.22625 0.93281 0.99730 0.98869 0.89187 1.21356 0.95447 0.91831 0.90281 1.45982 1.21606 1.28845 1.41835 1.20411 0.81651 0.86898 0.82134 1.90764 1.51759 1.31955 1.64514 1.21536 0.96881 0.99424 0.98686 1.21718 0.98838 0.94087 0.98428 0.86707 1.22752 1.01604 0.97103 0.95428 1.22044 0.97421 0.82685 1.00105 1.46268 1.56303 1.16934 1.20590 1.20739 0.78066 0.89498 0.81666 1.90861 1.41624 1.32836 1.71438 1.23934 0.95997 1.00528 0.99729 0.93059 0.80431 0.90364 0.91657 0.91494 0.91983 0.76883 0.87970 0.88750 0.89602 0.88957 0.91162 0.90330 0.75335 0.92372 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.67 13.97 55.49 0.78 -28.90 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.69 27.74 -169.99 -4.71 17.97 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 7 C -0.25 -7.04 10.45 -15.06 -0.16 -7.20 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 9 N -0.74 -17.75 5.21 -52.55 -0.27 -18.02 16 10 C 0.17 3.26 4.48 -67.03 -0.30 2.96 16 11 H 0.08 1.59 8.10 -51.92 -0.42 1.17 16 12 C -0.15 -2.25 7.40 -25.92 -0.19 -2.44 16 13 C -0.13 -1.66 3.75 -89.81 -0.34 -2.00 16 14 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.13 1.82 5.50 -4.04 -0.02 1.80 16 16 N -0.73 -8.37 5.56 -60.30 -0.33 -8.70 16 17 C 0.50 6.40 7.27 -10.99 -0.08 6.32 16 18 O -0.52 -8.97 13.70 -17.47 -0.24 -9.21 16 19 C -0.12 -0.97 5.12 -27.89 -0.14 -1.11 16 20 C -0.11 -0.85 2.57 -90.63 -0.23 -1.09 16 21 H 0.12 0.97 8.02 -51.93 -0.42 0.55 16 22 C -0.13 -0.47 6.71 -25.00 -0.17 -0.63 16 23 C 0.10 0.39 7.79 -3.02 -0.02 0.37 16 24 N -0.74 -5.61 6.24 -59.10 -0.37 -5.98 16 25 C 0.52 5.98 7.70 -10.86 -0.08 5.90 16 26 O -0.50 -8.60 15.18 -17.47 -0.27 -8.86 16 27 C -0.16 -2.65 7.45 -25.83 -0.19 -2.84 16 28 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 29 H 0.36 8.68 5.79 -40.82 -0.24 8.44 16 30 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.40 3.40 8.47 -40.82 -0.35 3.05 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.23 7.91 -51.93 -0.41 -0.18 16 38 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.41 2.68 8.96 -40.82 -0.37 2.31 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -38.56 350.77 -8.99 -47.55 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.83 Total: 8.81 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.03 Total: 0.06 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.20 Total: -61.60 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.50 Total: -18.07 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -38.56 -8.99 -47.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691446980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.354 kcal (2) G-P(sol) polarization free energy of solvation -38.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds