Wall clock time and date at job start Tue Mar 31 2020 03:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86807 * 119.99646 * 2 1 4 4 H 1.48504 * 109.46811 * 270.00219 * 3 2 1 5 5 H 1.48497 * 109.47108 * 30.00320 * 3 2 1 6 6 H 1.48505 * 109.46998 * 150.00318 * 3 2 1 7 7 C 1.38805 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99859 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00312 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 2 11 11 H 1.09011 * 112.84848 * 23.80466 * 10 9 7 12 12 C 1.53777 * 113.61672 * 155.00116 * 10 9 7 13 13 C 1.53781 * 87.08172 * 139.98325 * 12 10 9 14 14 H 1.08997 * 113.61493 * 89.20586 * 13 12 10 15 15 C 1.52998 * 113.61411 * 220.01877 * 13 12 10 16 16 N 1.46501 * 109.47216 * 183.47191 * 15 13 12 17 17 C 1.34780 * 120.00225 * 180.02562 * 16 15 13 18 18 O 1.21276 * 119.99633 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00039 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47030 * 179.97438 * 19 17 16 21 21 H 1.09000 * 110.43799 * 303.91099 * 20 19 17 22 22 C 1.54628 * 110.48632 * 181.22877 * 20 19 17 23 23 C 1.54663 * 101.68539 * 216.30874 * 22 20 19 24 24 N 1.46766 * 105.38117 * 25.77156 * 23 22 20 25 25 C 1.34426 * 111.29916 * 342.58270 * 24 23 22 26 26 O 1.21278 * 124.94275 * 180.69504 * 25 24 23 27 27 C 1.53776 * 87.17282 * 334.61050 * 13 12 10 28 28 H 0.97004 * 119.99806 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99741 * 0.02562 * 9 7 2 30 30 H 1.09003 * 113.61385 * 25.43288 * 12 10 9 31 31 H 1.08997 * 113.61618 * 254.53608 * 12 10 9 32 32 H 1.09000 * 109.47132 * 63.47528 * 15 13 12 33 33 H 1.08997 * 109.47734 * 303.47188 * 15 13 12 34 34 H 0.97000 * 119.99761 * 359.97438 * 16 15 13 35 35 H 1.09004 * 109.47372 * 60.00135 * 19 17 16 36 36 H 1.09003 * 109.47287 * 299.99742 * 19 17 16 37 37 H 1.09002 * 110.97177 * 334.64102 * 22 20 19 38 38 H 1.08994 * 110.97175 * 98.37096 * 22 20 19 39 39 H 1.08999 * 110.40049 * 266.74034 * 23 22 20 40 40 H 1.09001 * 110.18102 * 144.67906 * 23 22 20 41 41 H 0.97001 * 124.35394 * 162.85956 * 24 23 22 42 42 H 1.09005 * 113.61388 * 139.94258 * 27 13 12 43 43 H 1.09000 * 113.61520 * 270.83699 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1123 -2.4707 -0.0011 11 1 3.5278 -3.2969 -0.4061 12 6 5.5260 -2.3657 -0.5971 13 6 5.9849 -3.3090 0.5274 14 1 5.9144 -4.3651 0.2674 15 6 7.3419 -2.9340 1.1263 16 7 7.7278 -3.9335 2.1255 17 6 8.8944 -3.8080 2.7886 18 8 9.6249 -2.8678 2.5578 19 6 9.2916 -4.8364 3.8160 20 6 10.6485 -4.4613 4.4150 21 1 11.3960 -4.3570 3.6285 22 6 11.0936 -5.5190 5.4515 23 6 11.7943 -4.6406 6.5142 24 7 11.1812 -3.3131 6.3879 25 6 10.5389 -3.1816 5.2144 26 8 9.9565 -2.1824 4.8494 27 6 4.7878 -2.7943 1.3440 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3620 -0.0007 30 1 5.9548 -1.3658 -0.5305 31 1 5.6131 -2.7992 -1.5934 32 1 7.2718 -1.9548 1.6002 33 1 8.0917 -2.9022 0.3359 34 1 7.1433 -4.6852 2.3103 35 1 9.3623 -5.8153 3.3417 36 1 8.5416 -4.8689 4.6064 37 1 10.2328 -6.0373 5.8741 38 1 11.7946 -6.2271 5.0099 39 1 12.8642 -4.5826 6.3138 40 1 11.6180 -5.0441 7.5113 41 1 11.2360 -2.6184 7.0627 42 1 4.2798 -3.5734 1.9125 43 1 5.0144 -1.9119 1.9423 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691446980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:43 Heat of formation + Delta-G solvation = -72.902020 kcal Electronic energy + Delta-G solvation = -23307.030409 eV Core-core repulsion = 19772.549879 eV Total energy + Delta-G solvation = -3534.480530 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58543 -40.50540 -39.61228 -37.30782 -36.07952 -34.94274 -33.92411 -32.74894 -30.17034 -28.72221 -26.58306 -26.48261 -25.32740 -22.72078 -22.45388 -21.77134 -20.90413 -20.39363 -19.36227 -18.31274 -17.94193 -17.56596 -17.13089 -16.60713 -16.31653 -16.01502 -15.89631 -15.45322 -14.89839 -14.76747 -14.63618 -14.49763 -14.14648 -13.97121 -13.55245 -13.35084 -13.28146 -13.18960 -13.04858 -12.78882 -12.63967 -12.31898 -12.15776 -11.91428 -11.85382 -11.69951 -11.60429 -11.13053 -10.91390 -10.81814 -10.50299 -9.98975 -9.94264 -9.28231 -8.04775 -5.36638 1.35657 1.37176 1.44271 1.67985 1.84922 2.32603 2.45476 2.52612 3.25518 3.45973 3.53512 3.59096 3.71648 3.79612 3.89851 4.03343 4.08950 4.27272 4.33978 4.38951 4.47423 4.50317 4.57417 4.67484 4.80451 4.83744 4.88633 4.93537 4.96628 5.04113 5.14308 5.20349 5.27754 5.34094 5.53938 5.68463 5.76608 6.00043 6.09846 6.21663 6.71165 7.05995 7.37328 7.47931 7.84703 8.02063 9.16719 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026653 B = 0.002603 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.286046 B =10754.060163 C =11214.000073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.260 1.260 7 C -0.230 4.230 8 H 0.063 0.937 9 N -0.746 5.746 10 C 0.147 3.853 11 H 0.083 0.917 12 C -0.137 4.137 13 C -0.094 4.094 14 H 0.125 0.875 15 C 0.140 3.860 16 N -0.722 5.722 17 C 0.493 3.507 18 O -0.569 6.569 19 C -0.117 4.117 20 C -0.109 4.109 21 H 0.106 0.894 22 C -0.116 4.116 23 C 0.094 3.906 24 N -0.737 5.737 25 C 0.498 3.502 26 O -0.570 6.570 27 C -0.157 4.157 28 H 0.257 0.743 29 H 0.363 0.637 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.415 0.585 35 H 0.147 0.853 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.409 0.591 42 H 0.068 0.932 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.365 -19.766 12.627 36.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.256 4.256 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.185 1.185 7 C -0.361 4.361 8 H 0.081 0.919 9 N -0.387 5.387 10 C 0.038 3.962 11 H 0.101 0.899 12 C -0.177 4.177 13 C -0.113 4.113 14 H 0.143 0.857 15 C 0.016 3.984 16 N -0.375 5.375 17 C 0.280 3.720 18 O -0.447 6.447 19 C -0.157 4.157 20 C -0.131 4.131 21 H 0.124 0.876 22 C -0.154 4.154 23 C -0.029 4.029 24 N -0.392 5.392 25 C 0.284 3.716 26 O -0.448 6.448 27 C -0.197 4.197 28 H 0.066 0.934 29 H 0.196 0.804 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.251 0.749 35 H 0.164 0.836 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.139 0.861 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.247 0.753 42 H 0.087 0.913 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 28.355 -18.747 12.174 36.107 hybrid contribution -0.405 1.882 0.375 1.961 sum 27.950 -16.866 12.550 34.974 Atomic orbital electron populations 1.69872 1.06923 1.26550 1.59997 1.25465 0.96111 1.01022 1.03033 0.85472 0.78397 0.80173 0.78108 1.20250 1.22259 1.18539 1.19149 0.82745 0.93551 1.40625 0.91933 1.42842 1.02560 1.04085 1.89177 1.21980 0.90832 0.87997 0.95344 0.89873 1.23355 0.95822 0.99609 0.98894 1.22471 0.91489 1.00999 0.96333 0.85668 1.21107 0.95615 0.91082 0.90604 1.45898 1.21773 1.28720 1.41121 1.21394 0.81064 0.87140 0.82359 1.90746 1.53436 1.34364 1.66198 1.21641 0.96943 0.99508 0.97607 1.21782 0.98886 0.93623 0.98841 0.87643 1.22830 1.02788 0.96109 0.93639 1.22410 0.97983 0.80653 1.01825 1.46436 1.54863 1.18551 1.19344 1.21561 0.77321 0.89917 0.82785 1.90813 1.45046 1.35620 1.73300 1.23757 0.97288 1.00219 0.98446 0.93385 0.80379 0.91135 0.89592 0.94847 0.91874 0.74867 0.83570 0.87545 0.87856 0.86081 0.89819 0.87744 0.75253 0.91301 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.18 13.97 21.65 0.30 -63.88 16 2 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.95 47.60 27.74 68.60 1.90 49.51 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 6 H -0.26 -12.18 6.52 99.48 0.65 -11.53 16 7 C -0.23 -13.32 10.45 84.03 0.88 -12.44 16 8 H 0.06 3.91 8.06 -2.91 -0.02 3.88 16 9 N -0.75 -35.80 5.21 -320.17 -1.67 -37.46 16 10 C 0.15 5.45 4.48 45.58 0.20 5.65 16 11 H 0.08 3.08 8.10 -2.38 -0.02 3.06 16 12 C -0.14 -3.98 7.40 31.12 0.23 -3.75 16 13 C -0.09 -2.25 3.75 -10.27 -0.04 -2.28 16 14 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 15 C 0.14 3.65 5.50 86.38 0.47 4.12 16 16 N -0.72 -15.21 5.56 -463.07 -2.57 -17.78 16 17 C 0.49 12.05 7.27 87.66 0.64 12.69 16 18 O -0.57 -20.36 13.70 19.00 0.26 -20.10 16 19 C -0.12 -1.48 5.12 29.85 0.15 -1.33 16 20 C -0.11 -1.49 2.57 -10.80 -0.03 -1.52 16 21 H 0.11 1.65 8.02 -2.39 -0.02 1.63 16 22 C -0.12 -0.32 6.71 31.72 0.21 -0.11 16 23 C 0.09 0.40 7.79 86.90 0.68 1.07 16 24 N -0.74 -10.30 6.24 -459.48 -2.87 -13.17 16 25 C 0.50 11.52 7.70 87.90 0.68 12.20 16 26 O -0.57 -20.90 15.18 19.00 0.29 -20.61 16 27 C -0.16 -4.96 7.45 31.18 0.23 -4.73 16 28 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 29 H 0.36 17.17 5.79 -92.71 -0.54 16.63 16 30 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.03 1.10 7.87 -2.39 -0.02 1.08 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.41 5.74 8.47 -92.71 -0.79 4.96 16 35 H 0.15 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 -0.01 7.91 -2.39 -0.02 -0.03 16 38 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.41 5.22 8.96 -92.71 -0.83 4.39 16 42 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.05 2.02 7.92 -2.39 -0.02 2.00 16 Total: -1.00 -90.64 350.77 -0.75 -91.39 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -1.17 Total: 26.00 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 4.78 Total: 6.11 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -6.80 Total: -132.30 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: 0.55 Total: -40.71 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.90 Total: 49.51 kcal Total: -90.64 -0.75 -91.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691446980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.491 kcal (2) G-P(sol) polarization free energy of solvation -90.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds