Wall clock time and date at job start Tue Mar 31 2020 03:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99704 * 2 1 4 4 H 1.48508 * 109.46907 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47423 * 299.99700 * 3 2 1 6 6 H 1.48502 * 109.47007 * 60.00068 * 3 2 1 7 7 C 1.38808 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99876 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00426 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00242 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47129 * 34.99974 * 10 9 7 12 12 C 1.52997 * 109.47004 * 155.00151 * 10 9 7 13 13 N 1.46506 * 109.47289 * 304.99911 * 12 10 9 14 14 C 1.34774 * 120.00072 * 180.02562 * 13 12 10 15 15 O 1.21284 * 120.00066 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99838 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47353 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.21504 * 55.47278 * 17 16 14 19 19 C 1.54473 * 110.24642 * 177.49566 * 17 16 14 20 20 C 1.54631 * 101.76251 * 144.41535 * 19 17 16 21 21 C 1.51286 * 104.19523 * 335.19897 * 20 19 17 22 22 O 1.21283 * 124.94170 * 196.22851 * 21 20 19 23 23 N 1.34413 * 110.11415 * 16.25381 * 21 20 19 24 24 C 1.53001 * 109.46950 * 274.99820 * 10 9 7 25 25 C 1.53000 * 117.49406 * 128.74727 * 24 10 9 26 26 C 1.52999 * 117.49917 * 60.09188 * 24 10 9 27 27 H 0.96993 * 120.00405 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99803 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47289 * 184.99783 * 12 10 9 30 30 H 1.09004 * 109.47261 * 65.00039 * 12 10 9 31 31 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 32 32 H 1.09004 * 109.47043 * 299.99952 * 16 14 13 33 33 H 1.09001 * 109.47324 * 59.99585 * 16 14 13 34 34 H 1.09004 * 110.97234 * 262.53292 * 19 17 16 35 35 H 1.09003 * 110.97151 * 26.30058 * 19 17 16 36 36 H 1.09008 * 110.48747 * 216.52187 * 20 19 17 37 37 H 1.09001 * 110.60140 * 93.93740 * 20 19 17 38 38 H 0.96998 * 124.35002 * 180.37929 * 23 21 20 39 39 H 1.09000 * 115.55061 * 274.41676 * 24 10 9 40 40 H 1.09001 * 117.50211 * 0.02562 * 25 24 10 41 41 H 1.09004 * 117.49834 * 145.02254 * 25 24 10 42 42 H 1.09000 * 117.49978 * 214.98132 * 26 24 10 43 43 H 1.09003 * 117.49992 * 359.96808 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9688 -3.5505 0.5899 12 6 1.1810 -4.7521 0.6101 13 7 0.7343 -4.3355 1.9418 14 6 -0.0546 -5.1478 2.6726 15 8 -0.3945 -6.2238 2.2282 16 6 -0.5145 -4.7189 4.0421 17 6 -1.3906 -5.8149 4.6524 18 1 -0.8527 -6.7628 4.6666 19 6 -1.8209 -5.4208 6.0827 20 6 -3.2518 -6.0027 6.1530 21 6 -3.6991 -6.0631 4.7090 22 8 -4.8477 -6.1947 4.3426 23 7 -2.6383 -5.9502 3.8914 24 6 2.4220 -4.0356 -1.4365 25 6 3.8823 -4.3891 -1.7256 26 6 3.3029 -3.0622 -2.2222 27 1 -0.4850 0.8399 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 1.7559 -5.6746 0.6918 30 1 0.3134 -4.9201 -0.0281 31 1 1.0065 -3.4750 2.2973 32 1 0.3529 -4.5502 4.6804 33 1 -1.0900 -3.7968 3.9600 34 1 -1.1738 -5.8855 6.8267 35 1 -1.8341 -4.3374 6.2015 36 1 -3.9037 -5.3441 6.7271 37 1 -3.2388 -7.0010 6.5905 38 1 -2.6905 -5.9576 2.9229 39 1 1.6541 -4.5774 -1.9886 40 1 4.5836 -4.3522 -0.8921 41 1 4.0751 -5.1632 -2.4684 42 1 3.1148 -2.9638 -3.2913 43 1 3.6228 -2.1516 -1.7155 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752511650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:57 Heat of formation + Delta-G solvation = -46.755047 kcal Electronic energy + Delta-G solvation = -23766.260645 eV Core-core repulsion = 20232.913933 eV Total energy + Delta-G solvation = -3533.346712 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59091 -39.26421 -37.64060 -36.54564 -34.71239 -33.46076 -31.55411 -31.36034 -30.67396 -28.11864 -25.53455 -23.67795 -22.46391 -21.75961 -21.42763 -20.61834 -20.23813 -19.50922 -17.52465 -17.34481 -16.79745 -16.44972 -15.71625 -15.38626 -15.03415 -14.76988 -14.50374 -14.06264 -13.87034 -13.70271 -13.43947 -13.25410 -13.05136 -12.83328 -12.77200 -12.28729 -11.76228 -11.62985 -11.42208 -11.25939 -11.21969 -10.94164 -10.92187 -10.78076 -10.15685 -10.00713 -9.90068 -9.80136 -9.53405 -9.36030 -9.12782 -9.05832 -8.73610 -7.12585 -5.89064 -3.19046 2.58330 2.79884 3.33629 3.37477 3.39640 3.41294 3.42775 4.19097 4.24867 4.35096 4.51464 4.53123 4.79744 4.92554 5.11623 5.15759 5.20090 5.33956 5.41897 5.43424 5.45343 5.54329 5.56796 5.62703 5.68306 5.83012 5.88522 5.94131 6.00599 6.11467 6.32615 6.48843 6.53158 6.70396 6.77926 6.83558 6.91635 7.08335 7.58461 7.80893 8.25588 8.27607 8.43558 9.40062 9.93716 10.29684 11.32701 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014944 B = 0.003660 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.234280 B = 7647.666484 C = 8847.154640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.118 3.882 13 N -0.710 5.710 14 C 0.508 3.492 15 O -0.556 6.556 16 C -0.155 4.155 17 C 0.149 3.851 18 H 0.089 0.911 19 C -0.131 4.131 20 C -0.156 4.156 21 C 0.515 3.485 22 O -0.543 6.543 23 N -0.715 5.715 24 C -0.160 4.160 25 C -0.196 4.196 26 C -0.156 4.156 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.411 0.589 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.416 0.584 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.841 -10.425 10.723 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.083 3.917 11 H 0.073 0.927 12 C -0.006 4.006 13 N -0.361 5.361 14 C 0.294 3.706 15 O -0.436 6.436 16 C -0.195 4.195 17 C 0.042 3.958 18 H 0.107 0.893 19 C -0.168 4.168 20 C -0.196 4.196 21 C 0.301 3.699 22 O -0.421 6.421 23 N -0.371 5.371 24 C -0.182 4.182 25 C -0.234 4.234 26 C -0.193 4.193 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.248 0.752 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.256 0.744 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.133 -11.086 10.342 15.310 hybrid contribution 0.398 1.489 -0.589 1.650 sum 2.531 -9.597 9.753 13.915 Atomic orbital electron populations 1.69662 1.05080 1.25683 1.57176 1.24721 0.95421 0.97599 1.02742 0.86197 0.78816 0.84355 0.77253 1.20561 1.21876 1.21894 1.19198 0.90859 0.83820 1.43120 0.91069 1.42464 1.05804 0.99417 1.88100 1.20051 0.94305 0.86119 0.91268 0.92722 1.21603 0.98604 0.97518 0.82907 1.46007 1.50383 1.21779 1.17900 1.20523 0.78433 0.84548 0.87093 1.90682 1.57326 1.22761 1.72797 1.22104 1.01714 1.00732 0.94994 1.21410 0.85337 0.98644 0.90361 0.89268 1.22732 0.95842 1.02587 0.95685 1.22345 0.97774 1.04093 0.95419 1.20888 0.84682 0.75070 0.89288 1.90749 1.19329 1.50669 1.81328 1.46372 1.07099 1.73490 1.10126 1.23033 0.92179 1.03122 0.99832 1.22960 0.97236 0.99836 1.03354 1.22782 1.03354 0.94041 0.99129 0.93463 0.78078 0.91642 0.91824 0.75234 0.87316 0.87777 0.88924 0.89460 0.88098 0.87901 0.74357 0.89172 0.89549 0.90082 0.90207 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.10 13.06 55.49 0.72 -25.38 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.24 -5.86 8.63 -15.06 -0.13 -5.99 16 8 H 0.07 1.71 6.91 -52.49 -0.36 1.35 16 9 N -0.72 -15.61 4.54 -53.43 -0.24 -15.86 16 10 C 0.19 3.37 2.70 -67.93 -0.18 3.19 16 11 H 0.05 0.96 7.84 -51.93 -0.41 0.56 16 12 C 0.12 1.86 5.22 -4.04 -0.02 1.84 16 13 N -0.71 -10.30 5.39 -60.29 -0.32 -10.63 16 14 C 0.51 6.97 7.63 -10.99 -0.08 6.88 16 15 O -0.56 -9.18 14.87 5.55 0.08 -9.10 16 16 C -0.15 -1.49 5.32 -27.88 -0.15 -1.64 16 17 C 0.15 1.38 3.02 -67.01 -0.20 1.18 16 18 H 0.09 0.84 7.99 -51.93 -0.42 0.43 16 19 C -0.13 -0.84 6.69 -25.10 -0.17 -1.01 16 20 C -0.16 -1.28 6.86 -26.74 -0.18 -1.47 16 21 C 0.51 6.79 8.43 -10.86 -0.09 6.70 16 22 O -0.54 -9.62 18.03 5.56 0.10 -9.52 16 23 N -0.71 -8.85 5.60 -52.76 -0.30 -9.15 16 24 C -0.16 -2.67 5.36 -90.62 -0.49 -3.16 16 25 C -0.20 -2.85 10.18 -26.70 -0.27 -3.13 16 26 C -0.16 -2.67 9.78 -26.70 -0.26 -2.93 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.39 9.27 7.80 -40.82 -0.32 8.95 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.41 6.03 8.14 -40.82 -0.33 5.70 16 32 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.51 7.91 -51.93 -0.41 0.10 16 36 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.42 5.89 7.89 -40.82 -0.32 5.57 16 39 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 40 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.10 2.02 6.23 -51.93 -0.32 1.69 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -31.35 356.12 -8.61 -39.96 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -6.67 Total: 18.24 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.33 Total: 0.15 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.14 Total: -61.01 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.18 Total: -18.62 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.35 -8.61 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752511650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.797 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds