Wall clock time and date at job start Tue Mar 31 2020 03:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99704 * 2 1 4 4 H 1.48508 * 109.46907 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47423 * 299.99700 * 3 2 1 6 6 H 1.48502 * 109.47007 * 60.00068 * 3 2 1 7 7 C 1.38808 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99876 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00426 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00242 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47129 * 34.99974 * 10 9 7 12 12 C 1.52997 * 109.47004 * 155.00151 * 10 9 7 13 13 N 1.46506 * 109.47289 * 304.99911 * 12 10 9 14 14 C 1.34774 * 120.00072 * 180.02562 * 13 12 10 15 15 O 1.21284 * 120.00066 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99838 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47353 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.21504 * 55.47278 * 17 16 14 19 19 C 1.54473 * 110.24642 * 177.49566 * 17 16 14 20 20 C 1.54631 * 101.76251 * 144.41535 * 19 17 16 21 21 C 1.51286 * 104.19523 * 335.19897 * 20 19 17 22 22 O 1.21283 * 124.94170 * 196.22851 * 21 20 19 23 23 N 1.34413 * 110.11415 * 16.25381 * 21 20 19 24 24 C 1.53001 * 109.46950 * 274.99820 * 10 9 7 25 25 C 1.53000 * 117.49406 * 128.74727 * 24 10 9 26 26 C 1.52999 * 117.49917 * 60.09188 * 24 10 9 27 27 H 0.96993 * 120.00405 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99803 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47289 * 184.99783 * 12 10 9 30 30 H 1.09004 * 109.47261 * 65.00039 * 12 10 9 31 31 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 32 32 H 1.09004 * 109.47043 * 299.99952 * 16 14 13 33 33 H 1.09001 * 109.47324 * 59.99585 * 16 14 13 34 34 H 1.09004 * 110.97234 * 262.53292 * 19 17 16 35 35 H 1.09003 * 110.97151 * 26.30058 * 19 17 16 36 36 H 1.09008 * 110.48747 * 216.52187 * 20 19 17 37 37 H 1.09001 * 110.60140 * 93.93740 * 20 19 17 38 38 H 0.96998 * 124.35002 * 180.37929 * 23 21 20 39 39 H 1.09000 * 115.55061 * 274.41676 * 24 10 9 40 40 H 1.09001 * 117.50211 * 0.02562 * 25 24 10 41 41 H 1.09004 * 117.49834 * 145.02254 * 25 24 10 42 42 H 1.09000 * 117.49978 * 214.98132 * 26 24 10 43 43 H 1.09003 * 117.49992 * 359.96808 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9688 -3.5505 0.5899 12 6 1.1810 -4.7521 0.6101 13 7 0.7343 -4.3355 1.9418 14 6 -0.0546 -5.1478 2.6726 15 8 -0.3945 -6.2238 2.2282 16 6 -0.5145 -4.7189 4.0421 17 6 -1.3906 -5.8149 4.6524 18 1 -0.8527 -6.7628 4.6666 19 6 -1.8209 -5.4208 6.0827 20 6 -3.2518 -6.0027 6.1530 21 6 -3.6991 -6.0631 4.7090 22 8 -4.8477 -6.1947 4.3426 23 7 -2.6383 -5.9502 3.8914 24 6 2.4220 -4.0356 -1.4365 25 6 3.8823 -4.3891 -1.7256 26 6 3.3029 -3.0622 -2.2222 27 1 -0.4850 0.8399 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 1.7559 -5.6746 0.6918 30 1 0.3134 -4.9201 -0.0281 31 1 1.0065 -3.4750 2.2973 32 1 0.3529 -4.5502 4.6804 33 1 -1.0900 -3.7968 3.9600 34 1 -1.1738 -5.8855 6.8267 35 1 -1.8341 -4.3374 6.2015 36 1 -3.9037 -5.3441 6.7271 37 1 -3.2388 -7.0010 6.5905 38 1 -2.6905 -5.9576 2.9229 39 1 1.6541 -4.5774 -1.9886 40 1 4.5836 -4.3522 -0.8921 41 1 4.0751 -5.1632 -2.4684 42 1 3.1148 -2.9638 -3.2913 43 1 3.6228 -2.1516 -1.7155 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752511650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:56 Heat of formation + Delta-G solvation = -70.131346 kcal Electronic energy + Delta-G solvation = -23767.274317 eV Core-core repulsion = 20232.913933 eV Total energy + Delta-G solvation = -3534.360384 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.52763 -40.40975 -39.01449 -37.57755 -36.05298 -35.11759 -32.89869 -32.10432 -31.95775 -29.60746 -26.52229 -25.35629 -23.75432 -23.02653 -22.23103 -21.60344 -21.39786 -20.80174 -19.25369 -18.27454 -17.92823 -17.43902 -16.93199 -16.83513 -16.25966 -16.00739 -15.85034 -15.36247 -15.22412 -14.88958 -14.75644 -14.35672 -14.22128 -13.86653 -13.53232 -13.37558 -12.98987 -12.94227 -12.70455 -12.61618 -12.38515 -12.30968 -12.23161 -11.94669 -11.89066 -11.72839 -11.05638 -11.00794 -10.92459 -10.81595 -10.68827 -10.09892 -9.96313 -8.99428 -7.88673 -5.16112 1.49008 1.52076 1.59190 1.59343 1.71057 2.32483 2.47189 2.58510 3.07788 3.42788 3.49573 3.55679 3.81071 3.85606 3.95782 4.00566 4.17784 4.26415 4.36030 4.40027 4.42108 4.47540 4.59352 4.66159 4.68956 4.88798 4.88987 4.90113 4.92393 5.14418 5.15975 5.18196 5.28962 5.40183 5.47668 5.57179 5.62774 5.84815 6.11832 6.31125 6.65722 7.22671 7.31344 7.39714 8.10860 8.35902 9.34275 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014944 B = 0.003660 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.234280 B = 7647.666484 C = 8847.154640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.069 4.069 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.305 1.305 6 H -0.297 1.297 7 C -0.216 4.216 8 H 0.078 0.922 9 N -0.723 5.723 10 C 0.198 3.802 11 H 0.060 0.940 12 C 0.128 3.872 13 N -0.712 5.712 14 C 0.504 3.496 15 O -0.587 6.587 16 C -0.145 4.145 17 C 0.143 3.857 18 H 0.091 0.909 19 C -0.115 4.115 20 C -0.147 4.147 21 C 0.500 3.500 22 O -0.602 6.602 23 N -0.721 5.721 24 C -0.175 4.175 25 C -0.161 4.161 26 C -0.175 4.175 27 H 0.247 0.753 28 H 0.372 0.628 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.412 0.588 32 H 0.146 0.854 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.402 0.598 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -11.195 12.578 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.261 4.261 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.233 1.233 6 H -0.224 1.224 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.362 5.362 10 C 0.089 3.911 11 H 0.078 0.922 12 C 0.003 3.997 13 N -0.362 5.362 14 C 0.292 3.708 15 O -0.468 6.468 16 C -0.186 4.186 17 C 0.038 3.962 18 H 0.109 0.891 19 C -0.152 4.152 20 C -0.186 4.186 21 C 0.288 3.712 22 O -0.484 6.484 23 N -0.374 5.374 24 C -0.196 4.196 25 C -0.198 4.198 26 C -0.213 4.213 27 H 0.056 0.944 28 H 0.204 0.796 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.248 0.752 32 H 0.164 0.836 33 H 0.122 0.878 34 H 0.146 0.854 35 H 0.117 0.883 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.239 0.761 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.570 -11.883 12.223 17.649 hybrid contribution -0.254 1.611 -1.239 2.048 sum 4.316 -10.272 10.984 15.646 Atomic orbital electron populations 1.69805 1.06452 1.25504 1.60124 1.25334 0.95983 1.00350 1.04452 0.85296 0.78528 0.81103 0.76173 1.19000 1.23300 1.22409 1.19494 0.91161 0.84557 1.39571 0.90403 1.42574 1.05253 1.00397 1.87993 1.20150 0.94189 0.84730 0.92050 0.92186 1.21409 0.97636 0.97308 0.83325 1.46027 1.50794 1.21930 1.17496 1.21268 0.77406 0.83843 0.88309 1.90671 1.58192 1.24169 1.73776 1.22153 1.03033 1.00510 0.92857 1.21680 0.83989 0.98760 0.91744 0.89094 1.22800 0.94797 1.03560 0.94093 1.22396 0.98960 1.05744 0.91538 1.21865 0.83911 0.73809 0.91622 1.90703 1.21668 1.53380 1.82683 1.46659 1.08455 1.72567 1.09706 1.22952 0.93898 1.03845 0.98941 1.23029 0.95138 0.98186 1.03491 1.22734 1.04909 0.94381 0.99228 0.94447 0.79624 0.90309 0.93719 0.75196 0.83582 0.87807 0.85357 0.88330 0.86936 0.85952 0.76100 0.89210 0.88368 0.87708 0.89818 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.56 13.06 21.65 0.28 -55.28 16 2 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 3 Si 0.96 43.27 29.55 68.60 2.03 45.30 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 6 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.22 -10.49 8.63 84.03 0.73 -9.76 16 8 H 0.08 3.65 6.91 -2.91 -0.02 3.63 16 9 N -0.72 -31.43 4.54 -322.95 -1.47 -32.89 16 10 C 0.20 6.69 2.70 44.99 0.12 6.81 16 11 H 0.06 2.00 7.84 -2.39 -0.02 1.98 16 12 C 0.13 3.94 5.22 86.38 0.45 4.39 16 13 N -0.71 -20.05 5.39 -463.05 -2.50 -22.55 16 14 C 0.50 13.31 7.63 87.66 0.67 13.98 16 15 O -0.59 -19.22 14.87 -3.04 -0.05 -19.26 16 16 C -0.15 -2.46 5.32 29.85 0.16 -2.31 16 17 C 0.14 2.35 3.02 45.44 0.14 2.48 16 18 H 0.09 1.50 7.99 -2.39 -0.02 1.48 16 19 C -0.12 -1.03 6.69 31.65 0.21 -0.82 16 20 C -0.15 -2.04 6.86 30.59 0.21 -1.84 16 21 C 0.50 13.18 8.43 87.90 0.74 13.93 16 22 O -0.60 -22.25 18.03 -3.04 -0.05 -22.31 16 23 N -0.72 -17.81 5.60 -439.44 -2.46 -20.27 16 24 C -0.17 -5.61 5.36 -10.79 -0.06 -5.67 16 25 C -0.16 -4.20 10.18 30.62 0.31 -3.89 16 26 C -0.18 -5.78 9.78 30.62 0.30 -5.48 16 27 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.37 18.21 7.80 -92.71 -0.72 17.49 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.04 1.54 8.14 -2.38 -0.02 1.53 16 31 H 0.41 11.64 8.14 -92.71 -0.75 10.88 16 32 H 0.15 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.13 0.34 8.14 -2.38 -0.02 0.32 16 35 H 0.10 0.73 7.91 -2.39 -0.02 0.71 16 36 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.40 11.87 7.89 -92.71 -0.73 11.14 16 39 H 0.09 2.89 8.11 -2.39 -0.02 2.87 16 40 H 0.10 2.37 8.05 -2.39 -0.02 2.35 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.08 3.08 6.23 -2.39 -0.01 3.07 16 Total: -1.00 -70.88 356.12 -0.93 -71.81 By element: Atomic # 1 Polarization: 47.94 SS G_CDS: -1.16 Total: 46.78 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 4.44 Total: 8.67 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -6.14 Total: -130.99 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.10 Total: -41.57 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -70.88 -0.93 -71.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752511650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.675 kcal (2) G-P(sol) polarization free energy of solvation -70.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds