Wall clock time and date at job start Tue Mar 31 2020 03:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 120.00120 * 2 1 4 4 H 1.48502 * 109.46896 * 274.98829 * 3 2 1 5 5 H 1.48501 * 109.46951 * 34.98189 * 3 2 1 6 6 H 1.48492 * 109.47136 * 154.98368 * 3 2 1 7 7 C 1.38813 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00469 * 187.02689 * 7 2 1 9 9 N 1.36935 * 119.99748 * 7.02995 * 7 2 1 10 10 C 1.47294 * 125.79375 * 354.82946 * 9 7 2 11 11 C 1.54320 * 107.30900 * 178.92674 * 10 9 7 12 12 C 1.55159 * 102.94130 * 337.81372 * 11 10 9 13 13 H 1.09002 * 111.00844 * 277.43267 * 12 11 10 14 14 C 1.53000 * 111.03830 * 153.59110 * 12 11 10 15 15 N 1.46501 * 109.47107 * 181.33296 * 14 12 11 16 16 C 1.34781 * 119.99993 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00115 * 0.02562 * 16 15 14 18 18 C 1.50693 * 119.99739 * 179.97438 * 16 15 14 19 19 N 1.46508 * 109.47055 * 179.97438 * 18 16 15 20 20 C 1.46766 * 124.34702 * 89.99840 * 19 18 16 21 21 C 1.54478 * 105.47331 * 197.01897 * 20 19 18 22 22 C 1.54631 * 101.76597 * 334.58924 * 21 20 19 23 23 C 1.34418 * 124.34964 * 269.70476 * 19 18 16 24 24 O 1.21284 * 124.94338 * 359.57504 * 23 19 18 25 25 C 1.47424 * 125.65133 * 174.82743 * 9 7 2 26 26 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.85803 * 59.49781 * 10 9 7 28 28 H 1.09000 * 109.87010 * 298.35769 * 10 9 7 29 29 H 1.08999 * 110.72074 * 219.45425 * 11 10 9 30 30 H 1.08997 * 110.87747 * 96.24532 * 11 10 9 31 31 H 1.08994 * 109.47227 * 301.33404 * 14 12 11 32 32 H 1.09003 * 109.46955 * 61.33434 * 14 12 11 33 33 H 0.97004 * 120.00108 * 0.02562 * 15 14 12 34 34 H 1.08996 * 109.47520 * 299.99667 * 18 16 15 35 35 H 1.08995 * 109.47410 * 60.00644 * 18 16 15 36 36 H 1.08994 * 110.24673 * 316.02018 * 20 19 18 37 37 H 1.09002 * 110.24278 * 78.02318 * 20 19 18 38 38 H 1.09002 * 110.97027 * 92.70283 * 21 20 19 39 39 H 1.08996 * 110.97330 * 216.43232 * 21 20 19 40 40 H 1.09002 * 110.49002 * 143.47305 * 22 21 20 41 41 H 1.09000 * 110.48318 * 266.12016 * 22 21 20 42 42 H 1.09002 * 110.36530 * 85.25899 * 25 9 7 43 43 H 1.09001 * 110.36388 * 323.04655 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0842 -1.2056 0.1150 9 7 1.3334 -2.3836 -0.1441 10 6 -0.1305 -2.5363 -0.2013 11 6 -0.4282 -4.0378 -0.3971 12 6 0.8930 -4.5775 -1.0060 13 1 0.9279 -4.4023 -2.0813 14 6 1.0773 -6.0629 -0.6891 15 7 2.3475 -6.5282 -1.2516 16 6 2.7234 -7.8131 -1.0950 17 8 2.0100 -8.5841 -0.4889 18 6 4.0297 -8.2918 -1.6741 19 7 4.2069 -9.7139 -1.3695 20 6 3.7428 -10.8090 -2.2293 21 6 3.7467 -12.0669 -1.3327 22 6 4.8106 -11.6960 -0.2737 23 6 4.8205 -10.1832 -0.2694 24 8 5.3085 -9.4941 0.6012 25 6 1.9494 -3.7172 -0.2687 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5297 -1.9667 -1.0405 28 1 -0.5759 -2.1886 0.7308 29 1 -1.2580 -4.1794 -1.0895 30 1 -0.6379 -4.5200 0.5577 31 1 1.0844 -6.2057 0.3914 32 1 0.2565 -6.6321 -1.1255 33 1 2.9184 -5.9115 -1.7361 34 1 4.0220 -8.1496 -2.7547 35 1 4.8507 -7.7224 -1.2385 36 1 2.7342 -10.6049 -2.5885 37 1 4.4236 -10.9429 -3.0700 38 1 2.7717 -12.2189 -0.8695 39 1 4.0492 -12.9482 -1.8983 40 1 4.5250 -12.0811 0.7052 41 1 5.7885 -12.0792 -0.5650 42 1 2.1563 -4.1331 0.7173 43 1 2.8665 -3.6581 -0.8549 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753120560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:58 Heat of formation + Delta-G solvation = -43.951596 kcal Electronic energy + Delta-G solvation = -23636.720748 eV Core-core repulsion = 20103.495603 eV Total energy + Delta-G solvation = -3533.225145 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77559 -39.34265 -37.61814 -36.55080 -34.64428 -33.19946 -32.46185 -29.96579 -28.67118 -27.84875 -27.38811 -25.36699 -23.48710 -22.24848 -21.03128 -20.04417 -19.94427 -19.39590 -17.59292 -17.10312 -16.81314 -16.49138 -15.84038 -15.60116 -15.23490 -14.66385 -14.46113 -14.03011 -13.93699 -13.75487 -13.55698 -13.22866 -13.14080 -12.81947 -12.35962 -12.28198 -11.96647 -11.79347 -11.72434 -11.37975 -11.35081 -10.90497 -10.81071 -10.47174 -10.19928 -10.07689 -10.02341 -9.94798 -9.84668 -9.67666 -8.99221 -8.93161 -8.58629 -6.83582 -5.73194 -3.05396 2.29241 2.58610 2.64244 3.33421 3.39666 3.44972 3.47138 4.05034 4.15284 4.48533 4.49214 4.67915 4.71887 4.82262 5.02173 5.09247 5.13846 5.21278 5.22713 5.37485 5.42068 5.47886 5.52774 5.66285 5.66722 5.88582 6.02271 6.04491 6.12296 6.33659 6.42466 6.49321 6.52027 6.67352 6.82273 6.90522 7.49349 7.54917 7.62354 7.81539 7.94581 8.19899 8.24874 9.20809 9.81669 10.48524 11.39275 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.031077 B = 0.002703 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.762051 B =10356.265533 C =10885.043334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.134 3.866 15 N -0.723 5.723 16 C 0.492 3.508 17 O -0.536 6.536 18 C 0.106 3.894 19 N -0.605 5.605 20 C 0.105 3.895 21 C -0.130 4.130 22 C -0.152 4.152 23 C 0.521 3.479 24 O -0.528 6.528 25 C 0.142 3.858 26 H 0.252 0.748 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.403 0.597 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.019 0.981 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.425 -23.367 -8.403 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.010 3.990 15 N -0.375 5.375 16 C 0.276 3.724 17 O -0.413 6.413 18 C -0.020 4.020 19 N -0.339 5.339 20 C -0.018 4.018 21 C -0.168 4.168 22 C -0.193 4.193 23 C 0.309 3.691 24 O -0.404 6.404 25 C 0.015 3.985 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.237 0.763 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.036 0.964 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.102 -23.248 -7.482 25.173 hybrid contribution 0.552 1.343 -0.277 1.478 sum 6.653 -21.904 -7.759 24.172 Atomic orbital electron populations 1.69976 1.04934 1.25055 1.56804 1.24827 0.95702 0.97688 1.02191 0.86118 0.78714 0.83609 0.77474 1.21623 1.21761 1.20619 1.19060 0.91106 0.82557 1.43029 0.90437 1.44545 1.01702 1.00905 1.86142 1.21200 0.84438 0.88383 1.00847 1.22847 0.95259 0.99658 0.99565 1.22614 0.98638 0.91834 1.00641 0.90192 1.21388 0.84484 0.94288 0.98810 1.46056 1.23464 1.10534 1.57420 1.21120 0.88214 0.82420 0.80604 1.90694 1.54595 1.54726 1.41242 1.21209 0.96697 0.82011 1.02094 1.47790 1.57806 1.05071 1.23187 1.22096 1.00639 0.85886 0.93171 1.22575 1.00072 0.97326 0.96817 1.22298 1.01499 0.93214 1.02242 1.20945 0.76631 0.91013 0.80494 1.90750 1.46900 1.64557 1.38207 1.21568 0.94044 0.86664 0.96186 0.93747 0.93366 0.94073 0.91988 0.92227 0.91448 0.91755 0.76304 0.87205 0.86853 0.90186 0.90875 0.89707 0.89141 0.87909 0.87852 0.96358 0.94596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 10.38 55.49 0.58 -26.60 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.42 10.27 -15.06 -0.15 -6.58 16 8 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 9 N -0.61 -15.49 3.40 -169.85 -0.58 -16.06 16 10 C 0.18 4.26 5.39 -2.92 -0.02 4.24 16 11 C -0.13 -2.45 6.42 -24.90 -0.16 -2.61 16 12 C -0.12 -1.93 3.10 -88.47 -0.27 -2.21 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 14 C 0.13 1.94 5.13 -4.04 -0.02 1.92 16 15 N -0.72 -8.97 5.41 -60.30 -0.33 -9.29 16 16 C 0.49 6.49 7.90 -10.99 -0.09 6.41 16 17 O -0.54 -9.18 16.43 5.56 0.09 -9.09 16 18 C 0.11 1.02 6.42 -5.19 -0.03 0.98 16 19 N -0.60 -6.13 2.42 -173.78 -0.42 -6.55 16 20 C 0.10 0.68 7.35 -3.12 -0.02 0.65 16 21 C -0.13 -0.71 7.18 -25.10 -0.18 -0.89 16 22 C -0.15 -1.14 6.86 -26.74 -0.18 -1.32 16 23 C 0.52 6.39 8.02 -10.86 -0.09 6.30 16 24 O -0.53 -8.92 17.58 5.55 0.10 -8.82 16 25 C 0.14 2.86 6.40 -2.53 -0.02 2.84 16 26 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.05 1.28 7.31 -51.93 -0.38 0.90 16 28 H 0.04 1.11 7.62 -51.93 -0.40 0.71 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.04 8.04 -51.93 -0.42 0.63 16 31 H 0.07 1.10 8.10 -51.93 -0.42 0.67 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.40 4.11 8.34 -40.82 -0.34 3.77 16 34 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 1.09 7.91 -51.93 -0.41 0.68 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -36.88 353.46 -8.57 -45.45 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.98 Total: -0.91 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -1.33 Total: 9.43 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.75 Total: -58.51 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.19 Total: -17.91 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.88 -8.57 -45.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753120560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.495 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds