Wall clock time and date at job start Tue Mar 31 2020 03:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00244 * 2 1 4 4 H 1.48495 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46818 * 299.99951 * 3 2 1 6 6 H 1.48500 * 109.47064 * 59.99836 * 3 2 1 7 7 C 1.38808 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00651 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99626 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99542 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47054 * 180.02562 * 10 9 7 12 12 C 1.53785 * 113.61729 * 185.00130 * 11 10 9 13 13 C 1.53778 * 87.08158 * 220.01857 * 12 11 10 14 14 N 1.46496 * 113.61677 * 139.98377 * 13 12 11 15 15 C 1.34771 * 120.00225 * 154.99974 * 14 13 12 16 16 O 1.21284 * 119.99883 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00318 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.47492 * 179.97438 * 17 15 14 19 19 H 1.08995 * 110.21495 * 53.07130 * 18 17 15 20 20 C 1.54479 * 110.24544 * 174.99871 * 18 17 15 21 21 C 1.54623 * 101.76448 * 144.41635 * 20 18 17 22 22 C 1.51286 * 104.19583 * 335.20040 * 21 20 18 23 23 O 1.21283 * 124.94068 * 196.22850 * 22 21 20 24 24 N 1.34417 * 110.11517 * 16.49747 * 22 21 20 25 25 C 1.53776 * 113.61761 * 87.49931 * 11 10 9 26 26 H 0.97004 * 119.99138 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00154 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47266 * 59.99930 * 10 9 7 29 29 H 1.09006 * 109.47589 * 299.99812 * 10 9 7 30 30 H 1.09005 * 112.90343 * 316.24932 * 11 10 9 31 31 H 1.08997 * 113.61363 * 105.46725 * 12 11 10 32 32 H 1.09002 * 113.68841 * 334.57954 * 12 11 10 33 33 H 1.09008 * 113.60782 * 270.79822 * 13 12 11 34 34 H 0.97001 * 119.99602 * 334.99084 * 14 13 12 35 35 H 1.09005 * 109.47263 * 59.99549 * 17 15 14 36 36 H 1.08998 * 109.46827 * 300.00134 * 17 15 14 37 37 H 1.09006 * 110.97141 * 26.29683 * 20 18 17 38 38 H 1.09002 * 110.97085 * 262.53716 * 20 18 17 39 39 H 1.09000 * 110.48720 * 216.52574 * 21 20 18 40 40 H 1.09003 * 110.60041 * 93.93250 * 21 20 18 41 41 H 0.96995 * 124.34982 * 180.16393 * 24 22 21 42 42 H 1.09000 * 113.61319 * 25.43526 * 25 11 10 43 43 H 1.08998 * 113.61665 * 254.52876 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 6 1.7301 -6.2002 0.1227 13 6 0.7049 -6.6996 -0.9090 14 7 1.2677 -7.6260 -1.8945 15 6 0.4685 -8.5148 -2.5171 16 8 -0.7166 -8.5481 -2.2611 17 6 1.0473 -9.4674 -3.5313 18 6 -0.0643 -10.3623 -4.0830 19 1 -0.8899 -9.7535 -4.4516 20 6 0.4842 -11.2603 -5.2140 21 6 -0.3132 -12.5667 -4.9941 22 6 -0.6898 -12.5294 -3.5293 23 8 -1.0749 -13.4831 -2.8866 24 7 -0.5410 -11.2842 -3.0454 25 6 0.6171 -5.2477 -1.4080 26 1 -0.4849 0.8402 -0.0004 27 1 0.3555 -2.3880 -0.0002 28 1 2.6846 -3.7145 0.8905 29 1 2.6846 -3.7146 -0.8895 30 1 0.2364 -4.6709 0.6940 31 1 1.6158 -6.6542 1.1070 32 1 2.7587 -6.2234 -0.2373 33 1 -0.2198 -7.0662 -0.4632 34 1 2.2155 -7.5996 -2.0990 35 1 1.8087 -10.0858 -3.0559 36 1 1.4965 -8.9008 -4.3469 37 1 1.5539 -11.4311 -5.0925 38 1 0.2679 -10.8313 -6.1924 39 1 0.3111 -13.4349 -5.2055 40 1 -1.2072 -12.5799 -5.6176 41 1 -0.7230 -11.0284 -2.1276 42 1 1.3412 -5.0092 -2.1870 43 1 -0.3957 -4.9329 -1.6594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755218268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:36 Heat of formation + Delta-G solvation = -80.985678 kcal Electronic energy + Delta-G solvation = -22929.621060 eV Core-core repulsion = 19394.789996 eV Total energy + Delta-G solvation = -3534.831064 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60726 -40.83912 -39.47823 -37.55705 -36.32294 -34.57184 -32.90181 -32.12215 -31.86260 -28.52655 -26.62694 -26.49825 -25.02053 -23.07403 -22.12905 -21.59181 -21.34167 -20.56479 -19.06293 -18.31310 -17.92180 -17.49867 -17.20510 -16.61495 -16.22666 -16.17724 -15.70877 -15.38422 -15.12974 -14.81886 -14.73542 -14.57455 -14.22673 -13.70857 -13.40025 -13.35945 -13.26776 -13.03717 -12.92706 -12.79853 -12.60444 -12.36689 -12.12644 -12.07121 -11.89635 -11.85837 -11.38554 -11.29415 -10.93765 -10.91304 -10.74706 -10.11428 -9.96176 -8.98697 -7.95397 -5.24221 1.47049 1.48191 1.58132 1.58311 1.66488 2.25067 2.44905 2.56085 3.37823 3.41700 3.54768 3.59141 3.61446 3.82404 3.90012 3.91399 3.95802 4.26308 4.30941 4.40023 4.45856 4.61208 4.65487 4.68639 4.81500 4.88620 4.90262 4.91617 4.96209 5.01753 5.14462 5.15609 5.24905 5.28248 5.43833 5.51064 5.66894 5.84843 6.09057 6.27332 6.62991 7.22392 7.32303 7.32863 8.11116 8.32609 9.28577 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.042918 B = 0.002131 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.246481 B =13138.996766 C =13272.513650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.748 5.748 10 C 0.164 3.836 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.130 3.870 14 N -0.705 5.705 15 C 0.502 3.498 16 O -0.588 6.588 17 C -0.142 4.142 18 C 0.138 3.862 19 H 0.079 0.921 20 C -0.114 4.114 21 C -0.150 4.150 22 C 0.502 3.498 23 O -0.600 6.600 24 N -0.720 5.720 25 C -0.138 4.138 26 H 0.250 0.750 27 H 0.372 0.628 28 H 0.021 0.979 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.418 0.582 35 H 0.123 0.877 36 H 0.148 0.852 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.403 0.597 42 H 0.089 0.911 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.549 -24.235 -12.756 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.390 5.390 10 C 0.038 3.962 11 C -0.136 4.136 12 C -0.153 4.153 13 C 0.024 3.976 14 N -0.356 5.356 15 C 0.291 3.709 16 O -0.469 6.469 17 C -0.182 4.182 18 C 0.033 3.967 19 H 0.097 0.903 20 C -0.151 4.151 21 C -0.190 4.190 22 C 0.290 3.710 23 O -0.482 6.482 24 N -0.372 5.372 25 C -0.177 4.177 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.256 0.744 35 H 0.141 0.859 36 H 0.165 0.835 37 H 0.127 0.873 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.241 0.759 42 H 0.107 0.893 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.741 -24.681 -12.382 28.424 hybrid contribution -0.335 1.573 0.846 1.817 sum 6.406 -23.109 -11.535 26.610 Atomic orbital electron populations 1.69844 1.06736 1.25961 1.59767 1.25631 0.96439 1.01334 1.03916 0.85038 0.78309 0.79615 0.76594 1.18743 1.22054 1.22199 1.19717 0.91589 0.85403 1.40774 0.90392 1.42643 1.05631 1.01446 1.89308 1.20792 0.93505 0.84189 0.97695 1.22451 0.98775 0.94601 0.97803 1.23229 0.99377 0.93183 0.99531 1.22263 0.98016 0.87417 0.89862 1.45936 1.12808 1.35352 1.41553 1.21465 0.86389 0.81050 0.82008 1.90730 1.17920 1.72202 1.66000 1.22168 0.99446 0.97199 0.99368 1.21672 0.96321 0.90791 0.87951 0.90338 1.22782 1.01458 0.92090 0.98773 1.22403 1.03660 1.01848 0.91079 1.21792 0.75487 0.81908 0.91811 1.90717 1.50171 1.40125 1.67226 1.46587 1.66850 1.09746 1.14059 1.23425 1.01176 0.95935 0.97150 0.94086 0.79693 0.96134 0.95492 0.90536 0.89861 0.87332 0.88718 0.74427 0.85855 0.83459 0.87327 0.86163 0.86711 0.86721 0.75939 0.89294 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.27 13.06 21.65 0.28 -59.99 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 3 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.75 -38.06 5.60 -343.44 -1.92 -39.98 16 10 C 0.16 6.23 6.10 86.38 0.53 6.76 16 11 C -0.12 -3.49 3.75 -10.27 -0.04 -3.53 16 12 C -0.11 -2.31 7.39 31.12 0.23 -2.08 16 13 C 0.13 2.82 4.24 45.52 0.19 3.01 16 14 N -0.71 -10.50 5.35 -440.04 -2.36 -12.85 16 15 C 0.50 8.37 7.66 87.66 0.67 9.04 16 16 O -0.59 -15.64 14.63 -3.04 -0.04 -15.69 16 17 C -0.14 -0.91 5.31 29.85 0.16 -0.75 16 18 C 0.14 1.34 2.99 45.44 0.14 1.48 16 19 H 0.08 1.01 7.91 -2.39 -0.02 0.99 16 20 C -0.11 -0.32 6.69 31.65 0.21 -0.11 16 21 C -0.15 -1.31 6.86 30.59 0.21 -1.10 16 22 C 0.50 10.05 8.43 87.90 0.74 10.79 16 23 O -0.60 -18.49 18.03 -3.04 -0.05 -18.55 16 24 N -0.72 -12.41 5.63 -439.44 -2.47 -14.88 16 25 C -0.14 -3.80 7.43 31.12 0.23 -3.57 16 26 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.37 20.42 7.67 -92.71 -0.71 19.71 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.03 0.99 7.84 -2.38 -0.02 0.97 16 30 H 0.08 2.54 8.14 -2.38 -0.02 2.53 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.11 1.72 8.08 -2.39 -0.02 1.70 16 33 H 0.09 2.46 7.46 -2.38 -0.02 2.44 16 34 H 0.42 3.34 8.73 -92.71 -0.81 2.53 16 35 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16 36 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.11 -0.11 7.91 -2.38 -0.02 -0.13 16 38 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.40 8.46 8.12 -92.71 -0.75 7.70 16 42 H 0.09 2.35 7.89 -2.39 -0.02 2.33 16 43 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -82.39 356.55 -1.20 -83.59 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -1.23 Total: 27.28 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 4.58 Total: 2.98 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -6.47 Total: -127.71 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.10 Total: -34.23 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -82.39 -1.20 -83.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755218268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.603 kcal (2) G-P(sol) polarization free energy of solvation -82.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds