Wall clock time and date at job start Tue Mar 31 2020 04:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47044 * 2 1 4 4 O 1.42894 * 109.47241 * 239.99848 * 2 1 3 5 5 C 1.50706 * 109.46753 * 119.99667 * 2 1 3 6 6 O 1.21279 * 119.99585 * 108.96922 * 5 2 1 7 7 N 1.34770 * 120.00252 * 288.96038 * 5 2 1 8 8 C 1.47082 * 120.87964 * 4.91330 * 7 5 2 9 9 C 1.53245 * 108.52034 * 231.20604 * 8 7 5 10 10 N 1.46895 * 109.33787 * 306.16790 * 9 8 7 11 11 C 1.46904 * 111.00056 * 187.25718 * 10 9 8 12 12 C 1.53000 * 109.47222 * 66.67545 * 11 10 9 13 13 H 1.09002 * 109.46901 * 303.48507 * 12 11 10 14 14 C 1.47195 * 109.46731 * 63.48361 * 12 11 10 15 15 N 7.91038 * 81.49488 * 71.81713 * 2 1 3 16 16 C 1.52999 * 109.47083 * 183.48462 * 12 11 10 17 17 C 1.50694 * 109.47305 * 175.00052 * 16 12 11 18 18 H 1.08003 * 119.99904 * 0.02562 * 17 16 12 19 19 C 1.37874 * 120.00432 * 179.97438 * 17 16 12 20 20 N 1.31519 * 119.99760 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00286 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47183 * 59.99864 * 21 19 17 23 23 H 1.48504 * 109.47046 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47086 * 299.99635 * 21 19 17 25 25 C 1.46904 * 111.26853 * 63.10646 * 10 9 8 26 26 C 1.47077 * 120.88199 * 184.93125 * 7 5 2 27 27 H 1.09000 * 109.47330 * 304.99029 * 1 2 3 28 28 H 1.09002 * 109.47271 * 64.99154 * 1 2 3 29 29 H 1.09007 * 109.47180 * 184.98545 * 1 2 3 30 30 H 0.96704 * 114.00462 * 59.99708 * 4 2 1 31 31 H 1.09000 * 109.63323 * 111.49295 * 8 7 5 32 32 H 1.09000 * 109.63068 * 350.91250 * 8 7 5 33 33 H 1.09002 * 109.49137 * 186.21452 * 9 8 7 34 34 H 1.08998 * 109.49182 * 66.13034 * 9 8 7 35 35 H 1.09003 * 109.46978 * 186.67947 * 11 10 9 36 36 H 1.08999 * 109.46809 * 306.67685 * 11 10 9 37 37 H 1.09009 * 109.46911 * 295.00172 * 16 12 11 38 38 H 1.09004 * 109.47166 * 54.99907 * 16 12 11 39 39 H 0.96993 * 119.99958 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.49283 * 56.85540 * 25 10 9 41 41 H 1.08999 * 109.49098 * 176.93770 * 25 10 9 42 42 H 1.09000 * 109.62573 * 248.50313 * 26 7 5 43 43 H 1.08993 * 109.62986 * 8.89355 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0323 -0.7104 1.2306 6 8 2.5562 -1.7995 1.1305 7 7 1.8993 -0.1353 2.4421 8 6 1.1728 1.1338 2.5997 9 6 2.0599 2.1088 3.3813 10 7 2.4874 1.4777 4.6370 11 6 3.1962 2.4375 5.4940 12 6 2.2221 3.5213 5.9603 13 1 1.7675 3.9990 5.0923 14 6 1.1712 2.9117 6.7913 15 7 0.3601 2.4413 7.4327 16 6 2.9783 4.5680 6.7809 17 6 2.0460 5.6973 7.1363 18 1 1.0168 5.6709 6.8099 19 6 2.5064 6.7637 7.8791 20 7 3.7595 6.7956 8.2770 21 14 1.3505 8.1632 8.3202 22 1 0.2147 7.6345 9.1174 23 1 2.0846 9.1791 9.1166 24 1 0.8336 8.7888 7.0766 25 6 3.3130 0.2896 4.3823 26 6 2.4772 -0.7599 3.6418 27 1 -0.3634 0.5893 0.8419 28 1 -0.3634 0.4345 -0.9313 29 1 -0.3634 -1.0238 0.0893 30 1 1.7210 -0.2702 -1.9980 31 1 0.2473 0.9603 3.1487 32 1 0.9469 1.5508 1.6183 33 1 1.4966 3.0152 3.6031 34 1 2.9363 2.3615 2.7845 35 1 3.6042 1.9181 6.3611 36 1 4.0082 2.8970 4.9304 37 1 3.3577 4.1090 7.6940 38 1 3.8121 4.9557 6.1955 39 1 4.0836 7.5459 8.7992 40 1 4.1719 0.5677 3.7716 41 1 3.6584 -0.1232 5.3301 42 1 1.6770 -1.1154 4.2909 43 1 3.1109 -1.5971 3.3495 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152753397.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:00 Heat of formation + Delta-G solvation = -51.623449 kcal Electronic energy + Delta-G solvation = -24005.575841 eV Core-core repulsion = 20472.018019 eV Total energy + Delta-G solvation = -3533.557822 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.62940 -38.67021 -37.03888 -36.38651 -34.78124 -33.56495 -32.27729 -31.42080 -30.71432 -28.24245 -26.17220 -24.66555 -24.02480 -22.77348 -21.72311 -21.17770 -19.26841 -18.20363 -17.03423 -16.68877 -16.51353 -16.16662 -15.86103 -15.15815 -14.93005 -14.91116 -14.51101 -14.43810 -14.38724 -13.68942 -13.21697 -12.98870 -12.79311 -12.71504 -12.53747 -12.37938 -12.08421 -11.97008 -11.77839 -11.48736 -11.37438 -11.33539 -11.28125 -11.09264 -10.70316 -10.59518 -10.58405 -10.21478 -9.83009 -9.60883 -9.31686 -8.96662 -8.50390 -8.32837 -6.14481 -4.18186 2.34356 2.51984 3.27041 3.32059 3.35150 3.65252 3.74430 3.81814 3.87933 4.20092 4.36477 4.43666 4.60012 4.66336 4.74760 4.84068 4.89401 5.02879 5.14877 5.17152 5.20949 5.23679 5.28840 5.46670 5.53974 5.59490 5.62569 5.67193 5.68692 5.86740 5.93795 6.20444 6.26486 6.40540 6.91993 6.98514 7.08878 7.23511 7.35942 7.46320 7.80057 7.93125 8.17215 8.52959 8.86291 9.47634 10.96342 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.025648 B = 0.003075 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.461673 B = 9102.292842 C = 9422.242992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.087 3.913 3 H 0.081 0.919 4 O -0.543 6.543 5 C 0.521 3.479 6 O -0.524 6.524 7 N -0.610 5.610 8 C 0.105 3.895 9 C 0.033 3.967 10 N -0.541 5.541 11 C 0.063 3.937 12 C 0.011 3.989 13 H 0.099 0.901 14 C 0.255 3.745 15 N -0.478 5.478 16 C 0.032 3.968 17 C -0.528 4.528 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.043 3.957 26 C 0.119 3.881 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.383 0.617 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.263 0.737 40 H 0.040 0.960 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 -10.010 -17.008 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.024 3.976 3 H 0.099 0.901 4 O -0.349 6.349 5 C 0.308 3.692 6 O -0.399 6.399 7 N -0.346 5.346 8 C -0.017 4.017 9 C -0.095 4.095 10 N -0.266 5.266 11 C -0.065 4.065 12 C -0.011 4.011 13 H 0.117 0.883 14 C -0.062 4.062 15 N -0.155 5.155 16 C -0.007 4.007 17 C -0.566 4.566 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.086 4.086 26 C -0.004 4.004 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.231 0.769 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.442 -11.763 -15.312 19.613 hybrid contribution 0.123 1.878 -0.653 1.992 sum -3.319 -9.885 -15.965 19.069 Atomic orbital electron populations 1.22583 0.93966 1.04120 1.03859 1.21545 0.94451 0.95534 0.86039 0.90094 1.86615 1.76471 1.56833 1.14933 1.20186 0.79194 0.85940 0.83927 1.90707 1.43167 1.20214 1.85787 1.48091 1.55430 1.24246 1.06847 1.22093 0.95698 0.83213 1.00741 1.22591 0.99051 0.97561 0.90328 1.61968 1.41888 1.07482 1.15215 1.22258 0.94939 0.92636 0.96717 1.19246 0.90518 0.94645 0.96705 0.88300 1.28813 0.93324 0.91280 0.92743 1.80996 1.11665 1.11703 1.11089 1.19166 0.95370 0.91257 0.94899 1.21084 0.96657 1.04388 1.34487 0.92551 1.24950 0.95086 0.98333 0.95541 1.69924 1.14504 1.31558 1.36984 0.86653 0.80959 0.81780 0.78683 1.20192 1.21184 1.20052 1.22466 0.94271 0.91445 1.00397 1.21728 0.98002 0.95661 0.84968 0.90299 0.90837 0.91106 0.76885 0.89971 0.89257 0.88414 0.93896 0.89912 0.92654 0.95543 0.94484 0.92688 0.94166 0.89189 0.90554 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.16 9.16 37.16 0.34 -0.82 16 2 C 0.09 0.74 3.15 -27.88 -0.09 0.65 16 3 H 0.08 0.51 7.30 -51.93 -0.38 0.13 16 4 O -0.54 -5.23 12.88 -54.90 -0.71 -5.94 16 5 C 0.52 6.35 7.07 -10.99 -0.08 6.28 16 6 O -0.52 -8.68 16.01 -14.11 -0.23 -8.91 16 7 N -0.61 -6.46 3.01 -172.46 -0.52 -6.98 16 8 C 0.11 0.90 5.42 -3.60 -0.02 0.88 16 9 C 0.03 0.33 5.47 -3.70 -0.02 0.31 16 10 N -0.54 -6.42 4.28 -234.31 -1.00 -7.42 16 11 C 0.06 0.85 4.34 -3.82 -0.02 0.83 16 12 C 0.01 0.18 2.13 -93.41 -0.20 -0.02 16 13 H 0.10 1.53 6.29 -51.93 -0.33 1.20 16 14 C 0.26 5.01 13.63 -20.76 -0.28 4.72 16 15 N -0.48 -10.33 18.54 42.15 0.78 -9.55 16 16 C 0.03 0.70 4.42 -27.89 -0.12 0.57 16 17 C -0.53 -13.53 8.60 -34.44 -0.30 -13.83 16 18 H 0.06 1.43 7.59 -52.48 -0.40 1.03 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -24.92 13.29 55.43 0.74 -24.19 16 21 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 25 C 0.04 0.46 5.62 -3.70 -0.02 0.43 16 26 C 0.12 1.29 6.58 -3.60 -0.02 1.27 16 27 H 0.08 0.42 5.81 -51.93 -0.30 0.12 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.38 1.54 9.08 45.56 0.41 1.95 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.52 4.69 -51.93 -0.24 0.28 16 33 H 0.10 0.95 6.14 -51.93 -0.32 0.63 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 1.14 7.95 -51.93 -0.41 0.72 16 36 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.90 7.98 -51.93 -0.41 0.48 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.08 7.09 -51.93 -0.37 0.72 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -34.38 351.39 -7.28 -41.65 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.69 Total: -2.55 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -0.92 Total: 2.87 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.00 Total: -48.13 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.93 Total: -14.85 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.38 -7.28 -41.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152753397.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.972 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds