Wall clock time and date at job start Tue Mar 31 2020 04:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47053 * 2 1 4 4 C 1.34770 * 124.18190 * 269.70122 * 3 2 1 5 5 O 1.21231 * 127.15383 * 359.97438 * 4 3 2 6 6 C 1.51579 * 105.68750 * 179.97438 * 4 3 2 7 7 N 1.47310 * 103.59341 * 0.31782 * 6 4 3 8 8 C 1.46495 * 126.69097 * 179.77145 * 7 6 4 9 9 N 1.46500 * 109.47438 * 270.01744 * 8 7 6 10 10 C 1.36936 * 120.00248 * 270.00199 * 9 8 7 11 11 H 1.08001 * 119.99829 * 141.84022 * 10 9 8 12 12 C 1.38811 * 119.99872 * 321.84082 * 10 9 8 13 13 N 1.31616 * 119.99830 * 156.48498 * 12 10 9 14 14 Si 1.86802 * 120.00110 * 336.48423 * 12 10 9 15 15 H 1.48492 * 109.46977 * 95.29224 * 14 12 10 16 16 H 1.48494 * 109.46903 * 215.29393 * 14 12 10 17 17 H 1.48503 * 109.46909 * 335.29592 * 14 12 10 18 18 C 1.46506 * 119.99746 * 89.99881 * 9 8 7 19 19 C 1.54278 * 110.02969 * 242.56100 * 18 9 8 20 20 C 1.54965 * 104.15618 * 217.13414 * 19 18 9 21 21 C 1.54890 * 102.77748 * 37.89216 * 20 19 18 22 22 C 1.53868 * 110.03130 * 125.34535 * 18 9 8 23 23 C 1.33796 * 124.17669 * 89.99947 * 3 2 1 24 24 O 1.21538 * 123.77276 * 359.96039 * 23 3 2 25 25 H 1.09000 * 109.47136 * 300.00016 * 1 2 3 26 26 H 1.09005 * 109.47324 * 60.00153 * 1 2 3 27 27 H 1.09006 * 109.46806 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47324 * 119.99846 * 2 1 3 29 29 H 1.08998 * 109.47317 * 240.00497 * 2 1 3 30 30 H 1.09000 * 110.76065 * 241.71197 * 6 4 3 31 31 H 1.09001 * 110.43324 * 118.76774 * 6 4 3 32 32 H 1.09007 * 109.47570 * 30.01993 * 8 7 6 33 33 H 1.08999 * 109.47592 * 150.02075 * 8 7 6 34 34 H 0.97008 * 120.00086 * 180.02562 * 13 12 10 35 35 H 1.08998 * 110.02024 * 3.94695 * 18 9 8 36 36 H 1.08993 * 110.48744 * 335.78164 * 19 18 9 37 37 H 1.08995 * 110.48326 * 98.42909 * 19 18 9 38 38 H 1.08992 * 110.72128 * 279.57289 * 20 19 18 39 39 H 1.09002 * 110.91603 * 156.29270 * 20 19 18 40 40 H 1.08998 * 110.48795 * 203.40334 * 21 20 19 41 41 H 1.09002 * 110.60295 * 80.81036 * 21 20 19 42 42 H 1.09004 * 110.03249 * 238.56204 * 22 18 9 43 43 H 1.08998 * 110.03396 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2761 2.0931 -1.1149 5 8 2.1529 1.7252 -2.2634 6 6 2.7523 3.4495 -0.6341 7 7 2.7103 3.3309 0.8336 8 6 3.0775 4.3631 1.8061 9 7 4.5014 4.2447 2.1298 10 6 4.9036 3.4475 3.1680 11 1 5.8079 2.8634 3.0813 12 6 4.1491 3.3902 4.3317 13 7 4.2340 2.3397 5.1200 14 14 3.0133 4.8042 4.7791 15 1 1.6392 4.5052 4.3021 16 1 2.9983 4.9796 6.2535 17 1 3.4996 6.0519 4.1370 18 6 5.4951 4.9793 1.3427 19 6 6.4416 3.9904 0.6312 20 6 7.8267 4.6829 0.6895 21 6 7.8214 5.3418 2.0912 22 6 6.3719 5.8384 2.2704 23 6 2.2688 2.0898 1.1069 24 8 2.1160 1.6599 2.2334 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 2.0808 4.2377 -0.9745 31 1 3.7704 3.6381 -0.9746 32 1 2.8820 5.3481 1.3819 33 1 2.4869 4.2345 2.7131 34 1 3.7065 2.2994 5.9331 35 1 4.9961 5.6121 0.6088 36 1 6.4683 3.0388 1.1621 37 1 6.1314 3.8426 -0.4032 38 1 7.9137 5.4377 -0.0919 39 1 8.6310 3.9516 0.6095 40 1 8.5182 6.1795 2.1216 41 1 8.0718 4.6105 2.8598 42 1 6.2992 6.8883 1.9861 43 1 6.0579 5.7093 3.3061 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153402541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:36 Heat of formation + Delta-G solvation = -13.263974 kcal Electronic energy + Delta-G solvation = -25779.466898 eV Core-core repulsion = 22247.572468 eV Total energy + Delta-G solvation = -3531.894430 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.68662 -38.26363 -37.83434 -35.60583 -35.24932 -33.88920 -31.59277 -30.52562 -28.05957 -27.94582 -26.74709 -25.57165 -23.51448 -22.68559 -21.62465 -20.15885 -19.60831 -19.00439 -17.36557 -16.69414 -16.45881 -16.10028 -15.48536 -15.32890 -14.77600 -14.55591 -14.33629 -13.81591 -13.66047 -13.60601 -13.47283 -13.20345 -12.80045 -12.55432 -12.37189 -12.28100 -12.03352 -11.46963 -11.28439 -11.09947 -10.85760 -10.61539 -10.54483 -10.46000 -10.40344 -10.09854 -9.97254 -9.84569 -9.66741 -9.55523 -9.34049 -8.56112 -8.30939 -7.08182 -6.01781 -3.46998 2.05380 2.66236 3.27804 3.40129 3.41997 3.55186 3.73459 4.47741 4.50699 4.78987 4.97655 5.19885 5.23862 5.25379 5.29379 5.35986 5.39620 5.41692 5.54366 5.58102 5.68278 5.86515 5.91166 6.07702 6.08019 6.13758 6.16485 6.22107 6.27997 6.29432 6.44398 6.45497 6.51258 6.61933 6.86468 6.98656 7.08428 7.22328 7.73545 7.84528 7.98482 8.36836 8.87421 8.89672 9.65397 9.96531 11.12716 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.007124 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.341049 B = 3929.260648 C = 5153.230046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.579 5.579 4 C 0.522 3.478 5 O -0.497 6.497 6 C 0.057 3.943 7 N -0.622 5.622 8 C 0.365 3.635 9 N -0.576 5.576 10 C -0.280 4.280 11 H 0.079 0.921 12 C 0.063 3.937 13 N -0.873 5.873 14 Si 0.858 3.142 15 H -0.282 1.282 16 H -0.297 1.297 17 H -0.266 1.266 18 C 0.166 3.834 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.130 4.130 23 C 0.687 3.313 24 O -0.514 6.514 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.264 0.736 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.752 3.763 -10.902 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.326 5.326 4 C 0.311 3.689 5 O -0.370 6.370 6 C -0.071 4.071 7 N -0.368 5.368 8 C 0.159 3.841 9 N -0.296 5.296 10 C -0.408 4.408 11 H 0.097 0.903 12 C -0.141 4.141 13 N -0.510 5.510 14 Si 0.687 3.313 15 H -0.210 1.210 16 H -0.225 1.225 17 H -0.190 1.190 18 C 0.059 3.941 19 C -0.172 4.172 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.169 4.169 23 C 0.388 3.612 24 O -0.383 6.383 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.896 3.313 -10.511 11.183 hybrid contribution -0.629 0.581 0.262 0.896 sum -2.525 3.894 -10.249 11.251 Atomic orbital electron populations 1.22098 0.95070 1.02632 1.02536 1.21505 0.94931 0.79910 1.04224 1.46667 1.61651 1.15591 1.08680 1.21005 0.75445 0.87895 0.84599 1.90732 1.51785 1.76224 1.18303 1.22356 1.04086 0.95901 0.84720 1.50396 1.67498 1.14022 1.04932 1.21851 0.86061 0.86818 0.89338 1.45058 1.00790 1.50452 1.33286 1.18458 1.11557 1.19813 0.90999 0.90319 1.25329 0.96830 0.96003 0.95963 1.69856 1.40602 1.26243 1.14341 0.87206 0.81213 0.85301 0.77599 1.20987 1.22453 1.19015 1.21202 0.89844 0.91233 0.91808 1.22814 0.94500 1.00863 0.99047 1.22428 0.97540 0.98924 0.97100 1.22242 0.96820 0.99403 0.96990 1.22472 0.94535 0.97237 1.02669 1.16291 0.78809 0.82135 0.83988 1.91056 1.55545 1.72037 1.19696 0.91819 0.92513 0.91005 0.88683 0.89557 0.87317 0.87169 0.91335 0.89586 0.92573 0.92882 0.90365 0.93515 0.92599 0.92646 0.93158 0.91530 0.93552 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.12 1.69 6.42 -4.05 -0.03 1.67 16 3 N -0.58 -9.94 2.60 -120.73 -0.31 -10.25 16 4 C 0.52 8.27 8.31 -10.56 -0.09 8.18 16 5 O -0.50 -8.52 17.75 5.60 0.10 -8.42 16 6 C 0.06 0.80 7.66 -4.32 -0.03 0.76 16 7 N -0.62 -11.51 3.26 -183.75 -0.60 -12.10 16 8 C 0.37 7.27 5.51 -63.76 -0.35 6.92 16 9 N -0.58 -12.24 2.26 -168.06 -0.38 -12.62 16 10 C -0.28 -7.25 8.20 -15.06 -0.12 -7.38 16 11 H 0.08 2.27 7.09 -52.49 -0.37 1.90 16 12 C 0.06 1.73 5.28 -17.43 -0.09 1.64 16 13 N -0.87 -26.22 13.97 55.49 0.78 -25.45 16 14 Si 0.86 20.96 25.17 -169.99 -4.28 16.68 16 15 H -0.28 -6.95 6.65 56.52 0.38 -6.57 16 16 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 C 0.17 2.90 3.42 -66.81 -0.23 2.68 16 19 C -0.13 -2.22 6.43 -25.02 -0.16 -2.38 16 20 C -0.12 -1.76 6.91 -24.70 -0.17 -1.93 16 21 C -0.12 -1.81 6.83 -25.07 -0.17 -1.99 16 22 C -0.13 -2.23 6.24 -25.61 -0.16 -2.39 16 23 C 0.69 14.20 8.31 -88.01 -0.73 13.46 16 24 O -0.51 -13.04 17.15 5.33 0.09 -12.95 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.47 7.86 -51.93 -0.41 1.06 16 29 H 0.09 1.12 8.00 -51.93 -0.42 0.71 16 30 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.07 1.11 7.90 -51.92 -0.41 0.70 16 33 H 0.09 2.00 3.32 -51.93 -0.17 1.83 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.05 0.81 7.81 -51.93 -0.41 0.41 16 36 H 0.08 1.58 6.64 -51.93 -0.35 1.24 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.70 7.17 -51.93 -0.37 1.33 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -32.09 346.46 -8.05 -40.15 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.71 Total: 2.19 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: -1.96 Total: 17.55 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.52 Total: -60.43 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.19 Total: -21.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.28 Total: 16.68 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.09 -8.05 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153402541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.883 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds