Wall clock time and date at job start Tue Mar 31 2020 03:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 115.55217 * 2 1 4 4 C 1.53000 * 117.49714 * 214.29395 * 2 1 3 5 5 C 1.52998 * 59.99977 * 252.51036 * 4 2 1 6 6 H 1.09000 * 117.51937 * 252.52065 * 5 4 2 7 7 N 1.46501 * 117.50034 * 107.48759 * 5 4 2 8 8 C 1.46765 * 124.35346 * 171.32792 * 7 5 4 9 9 C 1.54475 * 105.47647 * 197.03862 * 8 7 5 10 10 H 1.09005 * 110.99969 * 92.71801 * 9 8 7 11 11 N 1.46496 * 110.97047 * 216.46483 * 9 8 7 12 12 C 1.34771 * 120.00154 * 198.83383 * 11 9 8 13 13 O 1.21593 * 119.99978 * 0.02562 * 12 11 9 14 14 N 1.34784 * 120.00169 * 180.02562 * 12 11 9 15 15 C 1.46498 * 119.99615 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46628 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47202 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99685 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00216 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00069 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99806 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 90.00621 * 21 19 17 23 23 H 1.48503 * 109.47399 * 210.00111 * 21 19 17 24 24 H 1.48498 * 109.47295 * 330.00717 * 21 19 17 25 25 C 1.54624 * 101.76411 * 334.58827 * 9 8 7 26 26 C 1.34416 * 124.34844 * 351.35847 * 7 5 4 27 27 O 1.21282 * 124.94383 * 359.60381 * 26 7 5 28 28 H 1.08999 * 109.47570 * 274.33096 * 1 2 3 29 29 H 1.09004 * 109.46872 * 34.33327 * 1 2 3 30 30 H 1.08997 * 109.47134 * 154.32547 * 1 2 3 31 31 H 1.09001 * 117.50130 * 145.02178 * 4 2 1 32 32 H 1.09000 * 117.50169 * 359.97438 * 4 2 1 33 33 H 1.09006 * 110.23900 * 78.03592 * 8 7 5 34 34 H 1.08996 * 110.24548 * 316.04613 * 8 7 5 35 35 H 0.97000 * 120.00129 * 18.84027 * 11 9 8 36 36 H 0.96990 * 119.99520 * 0.02562 * 14 12 11 37 37 H 1.09008 * 109.47199 * 60.00801 * 15 14 12 38 38 H 1.08996 * 109.47921 * 299.99700 * 15 14 12 39 39 H 1.08999 * 109.47344 * 60.00470 * 16 15 14 40 40 H 1.09001 * 109.47340 * 300.00441 * 16 15 14 41 41 H 0.97000 * 119.99667 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.48787 * 143.48045 * 25 9 8 43 43 H 1.09000 * 110.48497 * 265.97918 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1212 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 3.1713 -0.8747 1.2688 7 7 1.3960 -2.1117 1.4421 8 6 1.4180 -2.3679 2.8870 9 6 0.7299 -3.7383 3.0732 10 1 1.4616 -4.5462 3.0720 11 7 -0.0700 -3.7609 4.3004 12 6 -0.4347 -4.9383 4.8455 13 8 -0.0994 -5.9818 4.3190 14 7 -1.1710 -4.9591 5.9742 15 6 -1.5678 -6.2390 6.5663 16 6 -2.3909 -5.9827 7.8304 17 6 -2.7986 -7.2992 8.4399 18 1 -2.5008 -8.2261 7.9722 19 6 -3.5526 -7.3205 9.5940 20 7 -3.9088 -8.4695 10.1257 21 14 -4.0682 -5.7174 10.4025 22 1 -5.3771 -5.2836 9.8512 23 1 -4.1912 -5.9195 11.8686 24 1 -3.0464 -4.6748 10.1305 25 6 -0.1750 -3.8094 1.8214 26 6 0.5061 -2.9036 0.8193 27 8 0.2823 -2.8938 -0.3726 28 1 -0.3634 0.0776 1.0247 29 1 -0.3633 0.8487 -0.5796 30 1 -0.3633 -0.9262 -0.4452 31 1 3.1715 -0.8756 -1.2681 32 1 1.6112 -1.8591 -1.2674 33 1 0.8638 -1.5924 3.4160 34 1 2.4459 -2.4099 3.2471 35 1 -0.3372 -2.9285 4.7205 36 1 -1.4387 -4.1267 6.3939 37 1 -0.6769 -6.8126 6.8225 38 1 -2.1679 -6.8003 5.8502 39 1 -3.2817 -5.4093 7.5739 40 1 -1.7912 -5.4212 8.5468 41 1 -4.4390 -8.4844 10.9378 42 1 -0.2224 -4.8303 1.4424 43 1 -1.1751 -3.4425 2.0523 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331818708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:13 Heat of formation + Delta-G solvation = -31.989768 kcal Electronic energy + Delta-G solvation = -23375.866469 eV Core-core repulsion = 19843.160028 eV Total energy + Delta-G solvation = -3532.706441 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26376 -39.70458 -37.40945 -36.95757 -35.02219 -33.94630 -32.79354 -30.77198 -29.67866 -28.61527 -27.72077 -24.87789 -23.29509 -22.28310 -21.16693 -20.81680 -20.77098 -19.23622 -18.29804 -17.30767 -16.90831 -16.67946 -16.34061 -15.46919 -15.13403 -14.98496 -14.30834 -14.23003 -14.05913 -13.91478 -13.83933 -13.63420 -13.35902 -13.26843 -13.12336 -12.62653 -12.31053 -12.06548 -11.74980 -11.56915 -11.51160 -11.24045 -11.10324 -10.43330 -10.38274 -10.33343 -10.03996 -9.94494 -9.82029 -9.35207 -9.24080 -8.86931 -8.65448 -8.49562 -6.12852 -4.13110 2.20910 2.33865 2.80687 3.23169 3.30498 3.31848 3.34752 3.42912 3.95442 4.08976 4.35018 4.35507 4.38163 4.49231 4.56741 4.60629 4.74693 4.94541 5.03838 5.11861 5.19950 5.21943 5.48918 5.52568 5.55663 5.63208 5.65831 5.84098 6.01854 6.07428 6.20360 6.29498 6.31583 6.54600 6.70873 6.73067 6.91457 7.19811 7.21853 7.64809 7.83811 8.16753 8.42804 8.77110 8.91895 9.47027 11.00163 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.036296 B = 0.002430 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.257140 B =11518.613999 C =11814.148366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.163 4.163 3 H 0.106 0.894 4 C -0.187 4.187 5 C 0.080 3.920 6 H 0.129 0.871 7 N -0.589 5.589 8 C 0.102 3.898 9 C 0.160 3.840 10 H 0.112 0.888 11 N -0.744 5.744 12 C 0.701 3.299 13 O -0.589 6.589 14 N -0.739 5.739 15 C 0.148 3.852 16 C -0.021 4.021 17 C -0.523 4.523 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.898 5.898 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 C -0.170 4.170 26 C 0.524 3.476 27 O -0.522 6.522 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.397 0.603 36 H 0.392 0.608 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.017 0.983 40 H 0.021 0.979 41 H 0.265 0.735 42 H 0.111 0.889 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.323 20.273 -16.429 28.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.183 4.183 3 H 0.125 0.875 4 C -0.224 4.224 5 C -0.023 4.023 6 H 0.147 0.853 7 N -0.321 5.321 8 C -0.022 4.022 9 C 0.052 3.948 10 H 0.130 0.870 11 N -0.401 5.401 12 C 0.401 3.599 13 O -0.466 6.466 14 N -0.393 5.393 15 C 0.025 3.975 16 C -0.059 4.059 17 C -0.561 4.561 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.536 5.536 21 Si 0.710 3.290 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.191 1.191 25 C -0.212 4.212 26 C 0.313 3.687 27 O -0.399 6.399 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.151 0.849 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.231 0.769 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.035 0.965 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.129 0.871 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.445 19.202 -17.370 28.728 hybrid contribution -0.559 1.691 1.101 2.094 sum 11.887 20.893 -16.269 29.026 Atomic orbital electron populations 1.21481 0.92575 1.03342 1.01471 1.22803 0.96309 0.94426 1.04736 0.87547 1.23904 1.03346 1.02335 0.92851 1.21649 0.95033 0.92948 0.92698 0.85339 1.47533 1.39519 1.37355 1.07684 1.22284 1.02553 0.96565 0.80799 1.21453 0.92781 0.97315 0.83207 0.87003 1.45019 1.59078 1.07852 1.28150 1.15985 0.79331 0.83564 0.81012 1.90932 1.60539 1.31090 1.64067 1.45532 1.56281 1.11221 1.26257 1.21411 0.98819 0.81987 0.95276 1.19797 0.94879 0.98810 0.92445 1.20911 1.33677 0.92030 1.09505 0.90567 1.25008 0.95368 0.96231 0.96728 1.69904 1.37681 1.24956 1.21066 0.86742 0.79294 0.84279 0.78664 1.20259 1.21302 1.19119 1.22915 1.00922 1.02090 0.95263 1.20898 0.78897 0.80430 0.88475 1.90586 1.65139 1.69211 1.14952 0.92861 0.92475 0.90602 0.88567 0.84945 0.90336 0.89181 0.76888 0.77485 0.92010 0.92043 0.96468 0.96030 0.92537 0.87065 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.14 37.16 0.34 -0.80 16 2 C -0.16 -1.23 6.41 -90.62 -0.58 -1.81 16 3 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.19 -1.56 9.52 -26.73 -0.25 -1.81 16 5 C 0.08 0.59 6.87 -67.93 -0.47 0.12 16 6 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 7 N -0.59 -4.76 2.96 -164.85 -0.49 -5.25 16 8 C 0.10 0.60 7.07 -3.12 -0.02 0.58 16 9 C 0.16 1.38 3.43 -66.31 -0.23 1.15 16 10 H 0.11 1.13 7.72 -51.93 -0.40 0.73 16 11 N -0.74 -7.04 5.19 -57.08 -0.30 -7.34 16 12 C 0.70 10.36 8.56 -86.92 -0.74 9.61 16 13 O -0.59 -11.26 16.09 5.28 0.08 -11.18 16 14 N -0.74 -11.13 5.56 -65.22 -0.36 -11.49 16 15 C 0.15 2.89 5.61 -4.04 -0.02 2.86 16 16 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 16 17 C -0.52 -14.35 9.66 -34.44 -0.33 -14.68 16 18 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 21 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 25 C -0.17 -1.67 6.59 -26.75 -0.18 -1.84 16 26 C 0.52 5.57 6.88 -10.86 -0.07 5.49 16 27 O -0.52 -7.05 12.57 5.56 0.07 -6.98 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.84 5.21 -51.93 -0.27 0.57 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.13 1.48 5.25 -51.93 -0.27 1.21 16 33 H 0.08 0.35 7.77 -51.93 -0.40 -0.05 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.40 2.53 8.38 -40.82 -0.34 2.18 16 36 H 0.39 4.72 8.49 -40.82 -0.35 4.37 16 37 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 40 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.11 1.03 8.08 -51.93 -0.42 0.61 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -34.02 349.16 -9.01 -43.04 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.61 Total: 4.10 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.78 Total: 0.12 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.37 Total: -50.31 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.15 Total: -18.16 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.02 -9.01 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331818708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.046 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds