Wall clock time and date at job start Tue Mar 31 2020 04:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47333 * 2 1 4 4 C 1.50695 * 109.47024 * 239.99821 * 2 1 3 5 5 O 1.21278 * 120.00599 * 266.91750 * 4 2 1 6 6 N 1.34787 * 119.99979 * 86.92200 * 4 2 1 7 7 C 1.46495 * 119.99771 * 179.97438 * 6 4 2 8 8 C 1.53002 * 117.49907 * 223.61879 * 7 6 4 9 9 C 1.52999 * 60.00034 * 252.51379 * 8 7 6 10 10 N 1.46900 * 109.47215 * 119.99562 * 2 1 3 11 11 C 1.46903 * 110.99778 * 186.29283 * 10 2 1 12 12 C 1.53247 * 109.33877 * 187.25442 * 11 10 2 13 13 N 1.47080 * 108.52145 * 306.17538 * 12 11 10 14 14 C 1.34771 * 120.88030 * 231.18692 * 13 12 11 15 15 O 1.21679 * 120.00029 * 4.39929 * 14 13 12 16 16 C 1.46372 * 119.99754 * 184.40790 * 14 13 12 17 17 H 1.08003 * 120.00469 * 352.33891 * 16 14 13 18 18 C 1.40058 * 119.99959 * 172.34807 * 16 14 13 19 19 N 1.30670 * 119.99754 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99858 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47502 * 269.99875 * 20 18 16 22 22 H 1.48495 * 109.47079 * 30.00410 * 20 18 16 23 23 H 1.48510 * 109.46719 * 150.00160 * 20 18 16 24 24 C 1.47084 * 118.23741 * 51.45671 * 13 12 11 25 25 C 1.46894 * 111.00097 * 310.60036 * 10 2 1 26 26 H 1.08999 * 109.46989 * 59.99902 * 1 2 3 27 27 H 1.08999 * 109.47206 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46904 * 300.00297 * 1 2 3 29 29 H 0.96996 * 120.00066 * 359.97438 * 6 4 2 30 30 H 1.09006 * 115.55430 * 9.32730 * 7 6 4 31 31 H 1.09006 * 117.49721 * 0.02562 * 8 7 6 32 32 H 1.09001 * 117.50196 * 145.02257 * 8 7 6 33 33 H 1.09004 * 117.49366 * 252.51013 * 9 8 7 34 34 H 1.09001 * 117.51881 * 107.48240 * 9 8 7 35 35 H 1.08997 * 109.48821 * 67.30200 * 11 10 2 36 36 H 1.08994 * 109.51844 * 307.23365 * 11 10 2 37 37 H 1.08994 * 109.62780 * 186.46616 * 12 11 10 38 38 H 1.09003 * 109.62592 * 65.88214 * 12 11 10 39 39 H 0.96996 * 119.99524 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.62779 * 68.24793 * 24 13 12 41 41 H 1.09003 * 109.63040 * 188.82916 * 24 13 12 42 42 H 1.08996 * 109.49269 * 292.70198 * 25 10 2 43 43 H 1.08993 * 109.49366 * 52.75879 * 25 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2877 -1.8951 -1.1849 6 7 2.1978 -0.0292 -2.3816 7 6 2.6867 -0.7197 -3.5775 8 6 3.7538 -0.0122 -4.4152 9 6 2.3199 -0.1225 -4.9376 10 7 2.0197 -0.6924 1.1995 11 6 3.4804 -0.5831 1.3109 12 6 3.9686 -1.4644 2.4657 13 7 3.2231 -1.0990 3.6797 14 6 3.8683 -0.8141 4.8282 15 8 5.0844 -0.7790 4.8502 16 6 3.1062 -0.5472 6.0490 17 1 2.0309 -0.4560 6.0052 18 6 3.7713 -0.4099 7.2738 19 7 5.0722 -0.5206 7.3268 20 14 2.7987 -0.0686 8.8317 21 1 2.6671 1.3983 9.0218 22 1 1.4485 -0.6757 8.7153 23 1 3.5073 -0.6570 9.9966 24 6 1.7546 -1.0585 3.6088 25 6 1.3538 -0.1875 2.4075 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.9933 0.9183 -2.4182 30 1 2.7429 -1.8058 -3.5034 31 1 4.0924 0.9669 -4.0762 32 1 4.5123 -0.6328 -4.8923 33 1 2.1352 -0.8156 -5.7583 34 1 1.7146 0.7840 -4.9425 35 1 3.7538 0.4541 1.5043 36 1 3.9423 -0.9136 0.3806 37 1 5.0340 -1.2998 2.6267 38 1 3.7890 -2.5128 2.2274 39 1 5.5328 -0.4259 8.1752 40 1 1.3663 -2.0686 3.4783 41 1 1.3554 -0.6255 4.5261 42 1 1.6568 0.8442 2.5856 43 1 0.2731 -0.2310 2.2723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332186287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:49 Heat of formation + Delta-G solvation = -23.559777 kcal Electronic energy + Delta-G solvation = -24291.207298 eV Core-core repulsion = 20758.866408 eV Total energy + Delta-G solvation = -3532.340890 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.28131 -38.65484 -37.35328 -36.37023 -33.93542 -32.90716 -32.46534 -31.09485 -29.98452 -26.98613 -25.52494 -24.50245 -22.74473 -22.67458 -21.73942 -20.86287 -20.19719 -18.79860 -17.37454 -16.96874 -16.51539 -15.79722 -15.29886 -15.22572 -14.78309 -14.40312 -14.26450 -14.22985 -13.91754 -13.84686 -13.24314 -13.04390 -12.64289 -12.35653 -12.29776 -11.96366 -11.88952 -11.57216 -11.50439 -11.35801 -11.16356 -10.96069 -10.88295 -10.85974 -10.67366 -10.35451 -10.20172 -10.00792 -9.68298 -8.97843 -8.85268 -8.17081 -7.55994 -7.14863 -6.18928 -4.63101 2.50121 2.79184 3.13964 3.20877 3.24056 3.59340 3.95530 4.11031 4.43391 4.52484 4.57646 4.61273 4.64536 4.64815 4.92615 4.97293 5.25259 5.26538 5.44885 5.47623 5.50654 5.58175 5.66115 5.70732 5.71486 5.75421 5.87750 5.89415 5.96317 6.15038 6.27882 6.28831 6.48796 6.60534 6.77839 7.05390 7.26695 7.36528 7.46403 7.64310 8.15135 8.16307 8.38945 9.03226 9.47311 10.59289 10.77797 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.033758 B = 0.003190 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.243109 B = 8775.897682 C = 9296.172295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 H 0.056 0.944 4 C 0.523 3.477 5 O -0.509 6.509 6 N -0.710 5.710 7 C 0.083 3.917 8 C -0.195 4.195 9 C -0.191 4.191 10 N -0.513 5.513 11 C 0.047 3.953 12 C 0.128 3.872 13 N -0.644 5.644 14 C 0.560 3.440 15 O -0.579 6.579 16 C -0.545 4.545 17 H 0.073 0.927 18 C 0.087 3.913 19 N -0.769 5.769 20 Si 0.907 3.093 21 H -0.272 1.272 22 H -0.264 1.264 23 H -0.279 1.279 24 C 0.129 3.871 25 C 0.038 3.962 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.399 0.601 30 H 0.138 0.862 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.268 0.732 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.037 0.963 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.943 4.330 -19.704 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.045 4.045 3 H 0.074 0.926 4 C 0.308 3.692 5 O -0.382 6.382 6 N -0.362 5.362 7 C -0.023 4.023 8 C -0.234 4.234 9 C -0.230 4.230 10 N -0.239 5.239 11 C -0.082 4.082 12 C 0.004 3.996 13 N -0.383 5.383 14 C 0.366 3.634 15 O -0.462 6.462 16 C -0.581 4.581 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.398 5.398 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.188 1.188 23 H -0.205 1.205 24 C 0.004 3.996 25 C -0.091 4.091 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.233 0.767 30 H 0.155 0.845 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.007 2.956 -19.519 21.700 hybrid contribution -0.391 1.620 0.575 1.763 sum -9.399 4.576 -18.944 21.637 Atomic orbital electron populations 1.21878 0.91931 1.03803 1.02574 1.21536 0.97187 0.95681 0.90140 0.92635 1.20621 0.77012 0.87749 0.83780 1.90713 1.48147 1.15242 1.84076 1.45474 1.68246 1.12754 1.09680 1.21567 1.00881 0.97638 0.82211 1.23427 0.92667 1.03073 1.04200 1.23370 0.98493 1.03616 0.97484 1.61738 1.05970 1.55587 1.00639 1.22539 0.86749 0.98953 0.99912 1.21161 0.97705 0.96753 0.83981 1.48257 1.04825 1.74649 1.10564 1.18252 0.87197 0.76316 0.81609 1.90582 1.14319 1.56970 1.84308 1.20959 0.93960 1.52228 0.90995 0.90940 1.25731 0.94640 0.92804 1.00034 1.70011 1.08188 1.35487 1.26134 0.86391 0.80402 0.78992 0.81094 1.19786 1.18838 1.20468 1.21583 0.82993 0.98413 0.96571 1.22822 0.98682 0.97532 0.90026 0.92002 0.90788 0.90640 0.76673 0.84476 0.88515 0.87984 0.87947 0.88562 0.94949 0.90960 0.89613 0.92977 0.92103 0.92987 0.88626 0.94522 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.59 37.16 0.32 -1.07 16 2 C 0.07 0.81 2.49 -68.87 -0.17 0.64 16 3 H 0.06 0.61 8.12 -51.92 -0.42 0.18 16 4 C 0.52 6.80 5.97 -10.98 -0.07 6.74 16 5 O -0.51 -8.78 15.62 5.56 0.09 -8.70 16 6 N -0.71 -6.72 5.57 -53.80 -0.30 -7.02 16 7 C 0.08 0.75 6.43 -67.93 -0.44 0.31 16 8 C -0.19 -1.39 10.46 -26.73 -0.28 -1.67 16 9 C -0.19 -1.21 10.45 -26.73 -0.28 -1.49 16 10 N -0.51 -8.13 4.17 -227.44 -0.95 -9.08 16 11 C 0.05 0.84 5.38 -3.69 -0.02 0.82 16 12 C 0.13 2.75 6.61 -3.60 -0.02 2.72 16 13 N -0.64 -15.23 3.00 -173.83 -0.52 -15.75 16 14 C 0.56 16.22 7.62 -12.99 -0.10 16.13 16 15 O -0.58 -19.05 14.51 5.21 0.08 -18.97 16 16 C -0.54 -15.29 8.87 -35.63 -0.32 -15.61 16 17 H 0.07 1.84 5.71 -52.48 -0.30 1.54 16 18 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 19 N -0.77 -23.20 11.86 55.55 0.66 -22.54 16 20 Si 0.91 20.03 29.56 -169.99 -5.02 15.01 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 C 0.13 2.47 6.51 -3.36 -0.02 2.45 16 25 C 0.04 0.58 5.17 -3.46 -0.02 0.57 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.67 6.16 -51.93 -0.32 0.35 16 29 H 0.40 2.68 8.83 -40.82 -0.36 2.32 16 30 H 0.14 1.47 7.40 -51.93 -0.38 1.08 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.25 6.74 -51.93 -0.35 0.90 16 37 H 0.09 2.00 7.04 -51.93 -0.37 1.64 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.27 7.33 8.29 -40.82 -0.34 7.00 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 1.85 5.44 -51.93 -0.28 1.57 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 1.03 5.74 -51.93 -0.30 0.73 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -36.61 346.54 -8.70 -45.32 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.44 Total: 3.64 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -1.51 Total: 12.88 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -1.11 Total: -54.39 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: 0.16 Total: -27.67 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.61 -8.70 -45.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332186287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.756 kcal (2) G-P(sol) polarization free energy of solvation -36.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds