Wall clock time and date at job start Tue Mar 31 2020 04:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.60364 * 2 1 4 4 C 1.51336 * 109.73102 * 120.39582 * 2 1 3 5 5 O 1.21286 * 120.35131 * 231.53763 * 4 2 1 6 6 N 1.34252 * 119.30312 * 51.55249 * 4 2 1 7 7 C 1.46701 * 120.36372 * 2.88537 * 6 4 2 8 8 C 1.53035 * 109.07113 * 71.27668 * 7 6 4 9 9 C 1.52447 * 110.16958 * 271.31439 * 8 7 6 10 10 N 1.46071 * 111.51673 * 62.66923 * 9 8 7 11 11 C 1.34771 * 119.81248 * 117.08028 * 10 9 8 12 12 O 1.21587 * 119.99836 * 185.44700 * 11 10 9 13 13 N 1.34774 * 119.99981 * 5.44384 * 11 10 9 14 14 C 1.46503 * 120.00045 * 185.28072 * 13 11 10 15 15 C 1.53005 * 109.47364 * 175.18959 * 14 13 11 16 16 C 1.50702 * 115.54726 * 282.41012 * 15 14 13 17 17 H 1.08001 * 119.99811 * 143.70384 * 16 15 14 18 18 C 1.37878 * 120.00095 * 323.70939 * 16 15 14 19 19 N 1.31507 * 119.99718 * 339.77126 * 18 16 15 20 20 Si 1.86793 * 119.99872 * 159.77808 * 18 16 15 21 21 H 1.48504 * 109.47337 * 89.99880 * 20 18 16 22 22 H 1.48501 * 109.46920 * 209.99576 * 20 18 16 23 23 H 1.48502 * 109.47432 * 329.99518 * 20 18 16 24 24 C 1.52997 * 117.49841 * 136.69846 * 15 14 13 25 25 C 1.53002 * 117.49650 * 68.07613 * 15 14 13 26 26 H 1.08995 * 109.46877 * 142.33622 * 1 2 3 27 27 H 1.09000 * 109.46786 * 262.33712 * 1 2 3 28 28 H 1.09004 * 109.46695 * 22.33817 * 1 2 3 29 29 H 0.96993 * 119.81691 * 182.88359 * 6 4 2 30 30 H 1.08996 * 109.54248 * 311.39607 * 7 6 4 31 31 H 1.09004 * 109.60236 * 191.18983 * 7 6 4 32 32 H 1.09001 * 109.35436 * 151.10185 * 8 7 6 33 33 H 1.08995 * 109.23909 * 31.45761 * 8 7 6 34 34 H 1.08998 * 109.07357 * 302.14470 * 9 8 7 35 35 H 1.09000 * 109.01744 * 183.15661 * 9 8 7 36 36 H 0.96998 * 120.00354 * 5.29071 * 13 11 10 37 37 H 1.08998 * 109.47103 * 295.19059 * 14 13 11 38 38 H 1.08998 * 109.47165 * 55.19047 * 14 13 11 39 39 H 0.97002 * 120.00185 * 185.01635 * 19 18 16 40 40 H 1.08994 * 117.49857 * 0.02562 * 24 15 14 41 41 H 1.09001 * 117.49396 * 145.01971 * 24 15 14 42 42 H 1.09002 * 117.49552 * 214.97745 * 25 15 14 43 43 H 1.08993 * 117.50207 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0409 -0.7208 1.2287 5 8 2.8606 -0.1946 1.9514 6 7 1.5775 -1.9489 1.5103 7 6 0.6342 -2.6116 0.6030 8 6 1.3721 -3.0211 -0.6737 9 6 1.3335 -1.8857 -1.6903 10 7 2.0221 -0.6974 -1.1928 11 6 3.1155 -0.2391 -1.8337 12 8 3.7488 0.6885 -1.3681 13 7 3.5069 -0.8090 -2.9905 14 6 4.7578 -0.3895 -3.6274 15 6 5.0267 -1.2677 -4.8511 16 6 5.5685 -2.6430 -4.5576 17 1 5.2634 -3.4840 -5.1627 18 6 6.4535 -2.8277 -3.5165 19 7 7.1294 -1.8057 -3.0390 20 14 6.6924 -4.5296 -2.7847 21 1 7.7830 -5.2311 -3.5084 22 1 7.0513 -4.4051 -1.3491 23 1 5.4330 -5.3057 -2.9145 24 6 5.5116 -0.5740 -6.1256 25 6 4.0845 -1.1200 -6.0474 26 1 -0.3633 -0.8135 -0.6279 27 1 -0.3633 -0.1370 1.0185 28 1 -0.3633 0.9506 -0.3906 29 1 1.8681 -2.4006 2.3180 30 1 -0.1742 -1.9248 0.3524 31 1 0.2230 -3.4978 1.0865 32 1 0.8948 -3.9036 -1.0995 33 1 2.4090 -3.2531 -0.4305 34 1 0.2947 -1.6327 -1.9023 35 1 1.8142 -2.2167 -2.6108 36 1 2.9603 -1.4969 -3.4017 37 1 4.6757 0.6519 -3.9385 38 1 5.5791 -0.4931 -2.9182 39 1 7.8045 -1.9468 -2.3569 40 1 5.6394 0.5079 -6.0923 41 1 6.2228 -1.1124 -6.7521 42 1 3.8568 -2.0176 -6.6225 43 1 3.2733 -0.3970 -5.9629 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335230028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:11 Heat of formation + Delta-G solvation = -34.720211 kcal Electronic energy + Delta-G solvation = -25518.266499 eV Core-core repulsion = 21985.441657 eV Total energy + Delta-G solvation = -3532.824842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.12903 -40.41585 -38.65301 -38.02342 -35.69851 -35.02996 -34.25369 -33.03199 -31.35715 -27.99249 -27.16344 -26.80057 -25.63458 -23.10722 -22.63844 -21.59347 -21.20129 -20.30744 -19.67076 -18.31001 -18.11317 -17.89384 -17.00225 -16.75359 -16.22382 -15.91293 -15.79945 -15.48906 -15.12794 -14.89869 -14.68224 -14.48129 -14.26432 -13.76609 -13.60528 -13.44063 -13.14226 -12.95857 -12.87821 -12.83965 -12.68080 -12.34729 -12.24816 -12.04795 -11.68516 -11.45327 -11.23500 -11.07711 -11.05215 -10.63830 -10.18616 -10.09557 -9.95653 -9.44939 -8.14519 -6.18527 1.14383 1.35427 1.40208 1.48572 1.92539 2.08996 2.36678 2.37717 2.91155 3.09623 3.42993 3.65763 3.83804 3.87158 3.92709 4.08109 4.24960 4.40393 4.44365 4.53410 4.60149 4.69675 4.71800 4.73728 4.81114 4.87632 4.92979 4.96575 5.09251 5.13071 5.25688 5.35712 5.52918 5.54414 5.57362 5.73270 5.80728 5.92448 5.98811 6.17527 6.36162 6.79373 7.08370 7.14037 7.41164 7.61795 8.85842 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.005722 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.047771 B = 4892.353304 C = 5496.124954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.142 3.858 3 H 0.086 0.914 4 C 0.501 3.499 5 O -0.599 6.599 6 N -0.713 5.713 7 C 0.082 3.918 8 C -0.161 4.161 9 C 0.090 3.910 10 N -0.615 5.615 11 C 0.691 3.309 12 O -0.642 6.642 13 N -0.709 5.709 14 C 0.173 3.827 15 C 0.010 3.990 16 C -0.503 4.503 17 H 0.067 0.933 18 C 0.029 3.971 19 N -0.898 5.898 20 Si 0.940 3.060 21 H -0.275 1.275 22 H -0.301 1.301 23 H -0.252 1.252 24 C -0.200 4.200 25 C -0.171 4.171 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.401 0.599 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.036 0.964 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.405 0.595 37 H 0.018 0.982 38 H 0.073 0.927 39 H 0.258 0.742 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.816 -5.447 3.286 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.104 0.896 4 C 0.286 3.714 5 O -0.479 6.479 6 N -0.364 5.364 7 C -0.040 4.040 8 C -0.201 4.201 9 C -0.032 4.032 10 N -0.354 5.354 11 C 0.392 3.608 12 O -0.524 6.524 13 N -0.365 5.365 14 C 0.049 3.951 15 C 0.009 3.991 16 C -0.540 4.540 17 H 0.085 0.915 18 C -0.172 4.172 19 N -0.535 5.535 20 Si 0.766 3.234 21 H -0.201 1.201 22 H -0.228 1.228 23 H -0.175 1.175 24 C -0.239 4.239 25 C -0.208 4.208 26 H 0.132 0.868 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.237 0.763 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.054 0.946 34 H 0.141 0.859 35 H 0.100 0.900 36 H 0.243 0.757 37 H 0.036 0.964 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.912 -4.400 3.958 21.733 hybrid contribution 1.395 -0.889 0.635 1.772 sum -19.517 -5.289 4.593 20.736 Atomic orbital electron populations 1.22480 0.88221 1.05851 1.05007 1.21272 0.98406 0.96054 0.80835 0.89558 1.21709 0.80077 0.82821 0.86768 1.90723 1.34744 1.68794 1.53617 1.46055 1.47280 1.16161 1.26888 1.22600 0.91684 1.00281 0.89434 1.22437 1.01221 0.99554 0.96852 1.21863 0.99974 0.83689 0.97626 1.47026 1.29210 1.30692 1.28447 1.16278 0.81036 0.82257 0.81258 1.90875 1.57874 1.34038 1.69581 1.45131 1.25504 1.43098 1.22741 1.20717 0.85037 0.93482 0.95898 1.19150 0.99522 0.94942 0.85510 1.20682 1.26608 0.92371 1.14296 0.91501 1.25651 0.95077 0.99549 0.96915 1.70003 1.21784 1.32329 1.29361 0.85823 0.79314 0.81313 0.76942 1.20066 1.22804 1.17507 1.22933 0.97544 0.98189 1.05245 1.22890 0.92020 1.02273 1.03622 0.86764 0.89186 0.89754 0.76255 0.86108 0.85697 0.85193 0.94551 0.85872 0.89994 0.75663 0.96368 0.90865 0.93263 0.91155 0.90685 0.88989 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 7.94 71.98 0.57 -1.62 16 2 C 0.14 4.04 2.89 44.42 0.13 4.17 16 3 H 0.09 3.13 7.25 -2.39 -0.02 3.11 16 4 C 0.50 16.22 6.82 87.94 0.60 16.82 16 5 O -0.60 -26.78 17.95 -3.05 -0.05 -26.83 16 6 N -0.71 -15.13 5.28 -462.53 -2.44 -17.57 16 7 C 0.08 0.88 6.31 86.35 0.54 1.43 16 8 C -0.16 -2.46 5.93 30.42 0.18 -2.28 16 9 C 0.09 1.67 5.56 86.28 0.48 2.15 16 10 N -0.61 -18.53 2.58 -820.52 -2.12 -20.65 16 11 C 0.69 29.68 8.26 179.06 1.48 31.15 16 12 O -0.64 -34.86 15.85 -3.99 -0.06 -34.92 16 13 N -0.71 -29.44 5.42 -478.53 -2.59 -32.04 16 14 C 0.17 8.60 5.30 86.38 0.46 9.06 16 15 C 0.01 0.45 1.72 -52.93 -0.09 0.36 16 16 C -0.50 -25.69 8.99 25.60 0.23 -25.46 16 17 H 0.07 3.29 7.89 -2.91 -0.02 3.27 16 18 C 0.03 1.58 5.08 84.66 0.43 2.01 16 19 N -0.90 -52.72 11.06 21.45 0.24 -52.49 16 20 Si 0.94 42.49 29.59 68.60 2.03 44.52 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 23 H -0.25 -10.40 7.11 99.48 0.71 -9.70 16 24 C -0.20 -8.73 9.88 30.59 0.30 -8.43 16 25 C -0.17 -6.44 9.94 30.60 0.30 -6.13 16 26 H 0.11 0.86 3.69 -2.39 -0.01 0.85 16 27 H 0.09 0.98 7.37 -2.39 -0.02 0.97 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.40 7.93 8.92 -92.71 -0.83 7.11 16 30 H 0.12 0.75 3.66 -2.39 -0.01 0.75 16 31 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.04 0.89 8.03 -2.39 -0.02 0.87 16 34 H 0.12 1.13 6.23 -2.39 -0.01 1.12 16 35 H 0.08 1.69 5.42 -2.39 -0.01 1.68 16 36 H 0.40 14.09 5.90 -92.71 -0.55 13.55 16 37 H 0.02 0.92 7.98 -2.39 -0.02 0.90 16 38 H 0.07 4.39 5.42 -2.39 -0.01 4.38 16 39 H 0.26 14.89 8.32 -92.71 -0.77 14.11 16 40 H 0.07 2.97 8.10 -2.39 -0.02 2.95 16 41 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 42 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -84.19 336.70 0.30 -83.89 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.31 Total: 32.87 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 5.62 Total: 23.22 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -6.92 Total: -122.74 kcal Atomic # 8 Polarization: -61.64 SS G_CDS: -0.12 Total: -61.76 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -84.19 0.30 -83.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335230028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.173 kcal (2) G-P(sol) polarization free energy of solvation -84.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds