Wall clock time and date at job start Tue Mar 31 2020 04:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47078 * 2 1 4 4 C 1.53001 * 109.47402 * 239.99880 * 2 1 3 5 5 C 1.52999 * 117.49872 * 128.74450 * 4 2 1 6 6 C 1.53003 * 117.49445 * 60.08518 * 4 2 1 7 7 N 1.46503 * 109.47225 * 119.99642 * 2 1 3 8 8 C 1.34773 * 120.00131 * 244.87396 * 7 2 1 9 9 O 1.21589 * 119.99941 * 189.32000 * 8 7 2 10 10 N 1.34772 * 120.00306 * 9.31994 * 8 7 2 11 11 C 1.46500 * 120.00078 * 174.58460 * 10 8 7 12 12 C 1.50706 * 109.46932 * 179.97438 * 11 10 8 13 13 O 1.21292 * 120.00055 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00002 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00274 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99908 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00345 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99772 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47170 * 59.99889 * 19 17 15 21 21 H 1.48507 * 109.46886 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47090 * 299.99671 * 19 17 15 23 23 C 1.46505 * 119.99920 * 64.87860 * 7 2 1 24 24 C 1.52997 * 117.49774 * 195.74165 * 23 7 2 25 25 C 1.52994 * 117.50069 * 127.11526 * 23 7 2 26 26 H 1.08994 * 109.47241 * 59.99889 * 1 2 3 27 27 H 1.09007 * 109.47078 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47262 * 299.99563 * 1 2 3 29 29 H 1.08999 * 115.54785 * 274.41939 * 4 2 1 30 30 H 1.08999 * 117.50210 * 0.02562 * 5 4 2 31 31 H 1.09004 * 117.49737 * 145.02419 * 5 4 2 32 32 H 1.09001 * 117.49491 * 214.97958 * 6 4 2 33 33 H 1.09001 * 117.50318 * 359.97438 * 6 4 2 34 34 H 0.97000 * 120.00073 * 354.59132 * 10 8 7 35 35 H 1.08995 * 109.47301 * 300.00363 * 11 10 8 36 36 H 1.08997 * 109.46829 * 60.00848 * 11 10 8 37 37 H 0.96999 * 119.99991 * 0.02562 * 14 12 11 38 38 H 0.97001 * 120.00151 * 180.02562 * 18 17 15 39 39 H 1.09003 * 115.54648 * 341.44268 * 23 7 2 40 40 H 1.08999 * 117.49970 * 359.97438 * 24 23 7 41 41 H 1.09009 * 117.49825 * 145.01707 * 24 23 7 42 42 H 1.09004 * 117.49636 * 214.97498 * 25 23 7 43 43 H 1.08999 * 117.49836 * 359.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.0763 0.0040 -2.1101 6 6 1.6373 -0.1483 -2.6096 7 7 2.0183 -0.6905 1.1962 8 6 2.7102 -0.0104 2.1317 9 8 3.2598 -0.6089 3.0362 10 7 2.7928 1.3331 2.0647 11 6 3.4427 2.0817 3.1434 12 6 3.4028 3.5547 2.8273 13 8 2.8823 3.9411 1.8021 14 7 3.9454 4.4426 3.6837 15 6 3.9087 5.7826 3.3965 16 1 3.4453 6.1267 2.4836 17 6 4.4687 6.6981 4.2792 18 7 5.0330 6.2793 5.3897 19 14 4.4180 8.5239 3.8881 20 1 3.0054 8.9643 3.7628 21 1 5.0775 9.2828 4.9812 22 1 5.1304 8.7763 2.6099 23 6 1.7546 -2.1205 1.3755 24 6 1.9517 -2.7050 2.7756 25 6 2.9515 -3.0289 1.6636 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 2.1253 -1.8046 -1.1646 30 1 3.3950 0.9947 -1.7863 31 1 3.8431 -0.6024 -2.5922 32 1 1.4582 -0.8548 -3.4201 33 1 1.0087 0.7422 -2.6146 34 1 2.4220 1.8044 1.3023 35 1 2.9187 1.8966 4.0810 36 1 4.4794 1.7585 3.2365 37 1 4.3620 4.1336 4.5034 38 1 5.4235 6.9184 6.0061 39 1 0.9471 -2.5294 0.7681 40 1 2.2779 -2.0258 3.5632 41 1 1.2737 -3.4987 3.0897 42 1 2.9313 -4.0356 1.2462 43 1 3.9352 -2.5627 1.7194 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358273289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:54 Heat of formation + Delta-G solvation = 2.578395 kcal Electronic energy + Delta-G solvation = -24227.781435 eV Core-core repulsion = 20696.573981 eV Total energy + Delta-G solvation = -3531.207453 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.64307 -38.46463 -37.89854 -36.50096 -34.64698 -34.09760 -33.14637 -31.37066 -30.02707 -27.48410 -24.65998 -24.37458 -22.73751 -22.39435 -22.21572 -20.83776 -19.56500 -19.26371 -18.19343 -17.86285 -16.60757 -15.76852 -15.55175 -15.21667 -14.95623 -14.76573 -14.52359 -14.29885 -14.07921 -13.69592 -13.39979 -13.28522 -13.08389 -12.61068 -12.23477 -12.00547 -11.96571 -11.63649 -11.58013 -11.48425 -11.14073 -11.04067 -10.95208 -10.52252 -10.50796 -10.31159 -10.29958 -10.21351 -9.62633 -9.51192 -8.78087 -8.62588 -8.23557 -8.09705 -6.51162 -3.93268 2.62948 3.13580 3.21501 3.24677 3.25672 3.58906 3.74993 3.93653 4.05914 4.15812 4.37854 4.72714 4.81414 4.83645 4.92532 4.98739 5.02900 5.14672 5.17509 5.20133 5.24695 5.46529 5.50523 5.62869 5.73871 5.76325 5.79451 5.91019 5.97423 5.99421 6.01416 6.07820 6.09022 6.14019 6.44967 6.71651 6.89312 7.05430 7.45872 7.92357 8.16228 8.45386 8.79058 9.04668 9.39653 9.87563 10.65664 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.003530 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.574593 B = 7928.986269 C = 8892.496570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.168 3.832 3 H 0.091 0.909 4 C -0.162 4.162 5 C -0.177 4.177 6 C -0.173 4.173 7 N -0.596 5.596 8 C 0.709 3.291 9 O -0.586 6.586 10 N -0.725 5.725 11 C 0.127 3.873 12 C 0.429 3.571 13 O -0.599 6.599 14 N -0.548 5.548 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.934 3.066 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.091 3.909 24 C -0.191 4.191 25 C -0.188 4.188 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.405 0.595 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 -15.464 -10.294 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.064 3.936 3 H 0.109 0.891 4 C -0.181 4.181 5 C -0.214 4.214 6 C -0.211 4.211 7 N -0.331 5.331 8 C 0.411 3.589 9 O -0.466 6.466 10 N -0.384 5.384 11 C -0.001 4.001 12 C 0.214 3.786 13 O -0.486 6.486 14 N -0.183 5.183 15 C -0.435 4.435 16 H 0.122 0.878 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.014 4.014 24 C -0.228 4.228 25 C -0.227 4.227 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.245 0.755 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.742 -15.448 -10.121 19.660 hybrid contribution 0.164 0.920 -0.051 0.936 sum -6.578 -14.528 -10.172 18.916 Atomic orbital electron populations 1.22149 0.94413 1.02548 1.02705 1.20660 0.94455 0.95589 0.82878 0.89082 1.22606 1.04544 0.99795 0.91146 1.23063 0.92428 1.02313 1.03591 1.22961 0.98426 1.03251 0.96437 1.46472 1.57924 1.08106 1.20566 1.15815 0.79358 0.81654 0.82063 1.90756 1.50819 1.67633 1.37375 1.45077 1.62853 1.04560 1.25944 1.20793 0.98690 0.90634 0.90021 1.19757 0.85514 0.86945 0.86367 1.90481 1.50640 1.79808 1.27661 1.41773 1.49712 1.06435 1.20369 1.19675 1.35986 0.80816 1.07040 0.87753 1.25319 0.96252 1.00928 0.95155 1.69607 1.37280 1.36162 1.10418 0.85877 0.78711 0.81374 0.78027 1.19784 1.20845 1.19781 1.21288 0.99729 0.79359 1.01010 1.23816 1.01823 1.03049 0.94158 1.23258 0.96252 0.99431 1.03758 0.91240 0.92100 0.91856 0.87241 0.88394 0.88839 0.88751 0.88451 0.75499 0.90077 0.89965 0.77013 0.91530 0.85763 0.84540 0.89703 0.89310 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.10 37.15 0.34 -1.18 16 2 C 0.17 1.88 2.80 -67.93 -0.19 1.69 16 3 H 0.09 1.15 5.37 -51.93 -0.28 0.88 16 4 C -0.16 -1.56 5.18 -90.62 -0.47 -2.03 16 5 C -0.18 -1.74 10.18 -26.69 -0.27 -2.02 16 6 C -0.17 -1.43 9.74 -26.69 -0.26 -1.69 16 7 N -0.60 -7.87 2.73 -164.24 -0.45 -8.32 16 8 C 0.71 11.84 8.05 -86.93 -0.70 11.14 16 9 O -0.59 -11.05 12.11 5.29 0.06 -10.98 16 10 N -0.72 -12.61 5.42 -66.42 -0.36 -12.97 16 11 C 0.13 2.39 6.16 -5.19 -0.03 2.36 16 12 C 0.43 9.86 7.85 -10.99 -0.09 9.78 16 13 O -0.60 -15.28 15.24 5.55 0.08 -15.19 16 14 N -0.55 -13.61 5.29 -10.96 -0.06 -13.66 16 15 C -0.31 -8.30 9.68 -14.93 -0.14 -8.44 16 16 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 18 N -0.89 -23.88 13.05 55.50 0.72 -23.16 16 19 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 C 0.09 1.05 5.16 -67.93 -0.35 0.70 16 24 C -0.19 -2.39 9.62 -26.73 -0.26 -2.64 16 25 C -0.19 -2.23 9.87 -26.73 -0.26 -2.49 16 26 H 0.07 0.57 7.29 -51.93 -0.38 0.19 16 27 H 0.06 0.51 7.18 -51.93 -0.37 0.14 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.11 1.03 7.31 -51.93 -0.38 0.65 16 30 H 0.10 1.08 8.05 -51.93 -0.42 0.66 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.78 7.61 -51.93 -0.40 0.39 16 34 H 0.40 6.98 4.91 -40.82 -0.20 6.78 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.12 1.12 7.27 -51.93 -0.38 0.74 16 40 H 0.14 2.17 5.29 -51.96 -0.28 1.89 16 41 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 1.41 7.54 -51.93 -0.39 1.02 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -30.17 351.80 -8.76 -38.93 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -6.26 Total: 18.80 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -2.78 Total: 5.77 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.14 Total: -58.11 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: 0.15 Total: -26.18 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.17 -8.76 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358273289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.505 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds