Wall clock time and date at job start Tue Mar 31 2020 04:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47078 * 2 1 4 4 C 1.53001 * 109.47402 * 239.99880 * 2 1 3 5 5 C 1.52999 * 117.49872 * 128.74450 * 4 2 1 6 6 C 1.53003 * 117.49445 * 60.08518 * 4 2 1 7 7 N 1.46503 * 109.47225 * 119.99642 * 2 1 3 8 8 C 1.34773 * 120.00131 * 244.87396 * 7 2 1 9 9 O 1.21589 * 119.99941 * 189.32000 * 8 7 2 10 10 N 1.34772 * 120.00306 * 9.31994 * 8 7 2 11 11 C 1.46500 * 120.00078 * 174.58460 * 10 8 7 12 12 C 1.50706 * 109.46932 * 179.97438 * 11 10 8 13 13 O 1.21292 * 120.00055 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00002 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00274 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99908 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00345 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99772 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47170 * 59.99889 * 19 17 15 21 21 H 1.48507 * 109.46886 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47090 * 299.99671 * 19 17 15 23 23 C 1.46505 * 119.99920 * 64.87860 * 7 2 1 24 24 C 1.52997 * 117.49774 * 195.74165 * 23 7 2 25 25 C 1.52994 * 117.50069 * 127.11526 * 23 7 2 26 26 H 1.08994 * 109.47241 * 59.99889 * 1 2 3 27 27 H 1.09007 * 109.47078 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47262 * 299.99563 * 1 2 3 29 29 H 1.08999 * 115.54785 * 274.41939 * 4 2 1 30 30 H 1.08999 * 117.50210 * 0.02562 * 5 4 2 31 31 H 1.09004 * 117.49737 * 145.02419 * 5 4 2 32 32 H 1.09001 * 117.49491 * 214.97958 * 6 4 2 33 33 H 1.09001 * 117.50318 * 359.97438 * 6 4 2 34 34 H 0.97000 * 120.00073 * 354.59132 * 10 8 7 35 35 H 1.08995 * 109.47301 * 300.00363 * 11 10 8 36 36 H 1.08997 * 109.46829 * 60.00848 * 11 10 8 37 37 H 0.96999 * 119.99991 * 0.02562 * 14 12 11 38 38 H 0.97001 * 120.00151 * 180.02562 * 18 17 15 39 39 H 1.09003 * 115.54648 * 341.44268 * 23 7 2 40 40 H 1.08999 * 117.49970 * 359.97438 * 24 23 7 41 41 H 1.09009 * 117.49825 * 145.01707 * 24 23 7 42 42 H 1.09004 * 117.49636 * 214.97498 * 25 23 7 43 43 H 1.08999 * 117.49836 * 359.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.0763 0.0040 -2.1101 6 6 1.6373 -0.1483 -2.6096 7 7 2.0183 -0.6905 1.1962 8 6 2.7102 -0.0104 2.1317 9 8 3.2598 -0.6089 3.0362 10 7 2.7928 1.3331 2.0647 11 6 3.4427 2.0817 3.1434 12 6 3.4028 3.5547 2.8273 13 8 2.8823 3.9411 1.8021 14 7 3.9454 4.4426 3.6837 15 6 3.9087 5.7826 3.3965 16 1 3.4453 6.1267 2.4836 17 6 4.4687 6.6981 4.2792 18 7 5.0330 6.2793 5.3897 19 14 4.4180 8.5239 3.8881 20 1 3.0054 8.9643 3.7628 21 1 5.0775 9.2828 4.9812 22 1 5.1304 8.7763 2.6099 23 6 1.7546 -2.1205 1.3755 24 6 1.9517 -2.7050 2.7756 25 6 2.9515 -3.0289 1.6636 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 2.1253 -1.8046 -1.1646 30 1 3.3950 0.9947 -1.7863 31 1 3.8431 -0.6024 -2.5922 32 1 1.4582 -0.8548 -3.4201 33 1 1.0087 0.7422 -2.6146 34 1 2.4220 1.8044 1.3023 35 1 2.9187 1.8966 4.0810 36 1 4.4794 1.7585 3.2365 37 1 4.3620 4.1336 4.5034 38 1 5.4235 6.9184 6.0061 39 1 0.9471 -2.5294 0.7681 40 1 2.2779 -2.0258 3.5632 41 1 1.2737 -3.4987 3.0897 42 1 2.9313 -4.0356 1.2462 43 1 3.9352 -2.5627 1.7194 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358273289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:53 Heat of formation + Delta-G solvation = -16.339921 kcal Electronic energy + Delta-G solvation = -24228.601794 eV Core-core repulsion = 20696.573981 eV Total energy + Delta-G solvation = -3532.027813 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84286 -40.24217 -38.88803 -37.61963 -36.21369 -35.64145 -34.43731 -33.36970 -30.99841 -29.09183 -26.48547 -25.24827 -23.85348 -23.19698 -23.11789 -21.87718 -21.33530 -20.46324 -20.05920 -19.04878 -17.82366 -17.46218 -16.92315 -16.52465 -16.34347 -16.00798 -15.87890 -15.78366 -15.37401 -15.13462 -14.60668 -14.27249 -14.12224 -13.92355 -13.70573 -13.54622 -13.35613 -12.90957 -12.76913 -12.53076 -12.47649 -12.28586 -12.13875 -12.05453 -11.80458 -11.57218 -11.27782 -11.22096 -11.04167 -10.72382 -10.57542 -10.20373 -10.09545 -9.30551 -8.51586 -6.02127 1.37470 1.40900 1.46577 1.54652 1.87256 1.98997 2.26811 2.62485 2.96756 3.08406 3.13506 3.15558 3.54964 3.94570 3.96755 4.09166 4.09263 4.14035 4.20543 4.23851 4.38103 4.40255 4.42872 4.43506 4.67361 4.80171 4.87460 4.89114 4.95247 5.03439 5.08732 5.23712 5.29509 5.31075 5.33431 5.37555 5.51124 5.76746 5.86761 5.91120 6.46705 6.87151 7.02183 7.40338 7.49737 7.92709 8.65132 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.003530 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.574593 B = 7928.986269 C = 8892.496570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.165 3.835 3 H 0.070 0.930 4 C -0.161 4.161 5 C -0.195 4.195 6 C -0.152 4.152 7 N -0.590 5.590 8 C 0.703 3.297 9 O -0.611 6.611 10 N -0.728 5.728 11 C 0.141 3.859 12 C 0.433 3.567 13 O -0.624 6.624 14 N -0.557 5.557 15 C -0.339 4.339 16 H 0.087 0.913 17 C -0.010 4.010 18 N -0.916 5.916 19 Si 0.997 3.003 20 H -0.269 1.269 21 H -0.271 1.271 22 H -0.270 1.270 23 C 0.093 3.907 24 C -0.200 4.200 25 C -0.184 4.184 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.406 0.594 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.162 0.838 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 -16.552 -11.595 21.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.061 3.939 3 H 0.088 0.912 4 C -0.180 4.180 5 C -0.233 4.233 6 C -0.190 4.190 7 N -0.324 5.324 8 C 0.405 3.595 9 O -0.493 6.493 10 N -0.388 5.388 11 C 0.013 3.987 12 C 0.220 3.780 13 O -0.512 6.512 14 N -0.193 5.193 15 C -0.468 4.468 16 H 0.105 0.895 17 C -0.210 4.210 18 N -0.556 5.556 19 Si 0.820 3.180 20 H -0.194 1.194 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.011 4.011 24 C -0.238 4.238 25 C -0.223 4.223 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.138 0.862 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.118 0.882 34 H 0.246 0.754 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.233 0.767 38 H 0.090 0.910 39 H 0.179 0.821 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.138 0.862 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.933 -16.568 -11.437 21.639 hybrid contribution 0.535 1.197 0.339 1.354 sum -7.399 -15.370 -11.099 20.351 Atomic orbital electron populations 1.22114 0.92674 1.03753 1.02686 1.20795 0.95732 0.94597 0.82752 0.91180 1.22540 1.04638 0.99979 0.90874 1.23075 0.93782 1.01594 1.04801 1.23050 0.96631 1.03420 0.95851 1.46584 1.56702 1.08870 1.20220 1.16003 0.79690 0.81273 0.82556 1.90767 1.51965 1.67923 1.38617 1.45051 1.63125 1.05028 1.25605 1.20578 0.99491 0.87744 0.90928 1.20375 0.83867 0.88370 0.85391 1.90457 1.51348 1.80795 1.28644 1.41816 1.50394 1.06212 1.20843 1.19711 1.37625 0.82212 1.07240 0.89534 1.26137 0.95259 1.04929 0.94704 1.69678 1.37323 1.37663 1.10923 0.84925 0.78825 0.76116 0.78110 1.19413 1.19595 1.19469 1.21689 1.00483 0.78127 1.00788 1.23706 1.02954 1.03474 0.93674 1.23223 0.94628 1.00761 1.03648 0.89708 0.90224 0.93458 0.86209 0.90427 0.88168 0.86663 0.88178 0.75431 0.89041 0.89323 0.76723 0.91031 0.82111 0.88161 0.87053 0.86221 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.10 71.98 0.66 -1.94 16 2 C 0.16 3.49 2.80 44.99 0.13 3.62 16 3 H 0.07 1.80 5.37 -2.38 -0.01 1.78 16 4 C -0.16 -2.77 5.18 -10.79 -0.06 -2.83 16 5 C -0.20 -3.67 10.18 30.62 0.31 -3.36 16 6 C -0.15 -2.13 9.74 30.62 0.30 -1.83 16 7 N -0.59 -15.11 2.73 -791.79 -2.16 -17.27 16 8 C 0.70 23.76 8.05 179.06 1.44 25.20 16 9 O -0.61 -23.58 12.11 -4.00 -0.05 -23.63 16 10 N -0.73 -25.89 5.42 -482.30 -2.62 -28.51 16 11 C 0.14 5.43 6.16 85.63 0.53 5.96 16 12 C 0.43 20.45 7.85 87.66 0.69 21.14 16 13 O -0.62 -32.71 15.24 -3.07 -0.05 -32.75 16 14 N -0.56 -28.39 5.29 -306.99 -1.62 -30.01 16 15 C -0.34 -18.78 9.68 84.04 0.81 -17.96 16 16 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 17 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 18 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 19 Si 1.00 41.81 29.55 68.60 2.03 43.84 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 23 C 0.09 1.94 5.16 44.99 0.23 2.17 16 24 C -0.20 -4.76 9.62 30.59 0.29 -4.47 16 25 C -0.18 -4.06 9.87 30.59 0.30 -3.76 16 26 H 0.08 1.18 7.29 -2.39 -0.02 1.16 16 27 H 0.08 1.05 7.18 -2.38 -0.02 1.03 16 28 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.12 1.85 7.31 -2.39 -0.02 1.84 16 30 H 0.08 1.76 8.05 -2.39 -0.02 1.75 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 1.36 7.61 -2.39 -0.02 1.35 16 34 H 0.41 14.40 4.91 -92.71 -0.46 13.95 16 35 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.40 19.57 7.90 -92.71 -0.73 18.83 16 38 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 39 H 0.16 2.20 7.27 -2.39 -0.02 2.18 16 40 H 0.10 3.23 5.29 -2.82 -0.01 3.22 16 41 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 1.91 7.54 -2.39 -0.02 1.89 16 Total: -1.00 -66.23 351.80 1.77 -64.45 By element: Atomic # 1 Polarization: 50.79 SS G_CDS: -0.15 Total: 50.64 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 6.10 Total: 21.90 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -6.11 Total: -124.46 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -0.10 Total: -56.38 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -66.23 1.77 -64.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358273289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.113 kcal (2) G-P(sol) polarization free energy of solvation -66.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds