Wall clock time and date at job start Tue Mar 31 2020 03:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50704 * 120.00279 * 2 1 4 4 N 1.46494 * 109.47092 * 125.90150 * 3 2 1 5 5 C 1.46501 * 120.00482 * 274.54384 * 4 3 2 6 6 C 1.50701 * 109.46959 * 275.16071 * 5 4 3 7 7 H 1.07998 * 120.00195 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00129 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00389 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00023 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47403 * 60.00259 * 10 8 6 12 12 H 1.48504 * 109.47214 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47168 * 299.99939 * 10 8 6 14 14 C 1.34780 * 120.00312 * 94.53975 * 4 3 2 15 15 O 1.21290 * 119.99631 * 355.50950 * 14 4 3 16 16 C 1.50697 * 120.00642 * 175.50690 * 14 4 3 17 17 H 1.08998 * 109.52160 * 35.21564 * 16 14 4 18 18 C 1.53031 * 109.49974 * 155.29273 * 16 14 4 19 19 C 1.53040 * 109.52764 * 181.30920 * 18 16 14 20 20 C 1.53191 * 109.31588 * 298.64401 * 19 18 16 21 21 N 1.46926 * 108.77387 * 54.63254 * 20 19 18 22 22 C 1.34773 * 120.63078 * 126.40874 * 21 20 19 23 23 N 1.34775 * 120.00008 * 354.97359 * 22 21 20 24 24 O 1.21586 * 120.00143 * 174.96274 * 22 21 20 25 25 C 1.46927 * 118.74058 * 306.39324 * 21 20 19 26 26 H 1.08002 * 120.00321 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99984 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99984 * 180.02562 * 2 1 3 29 29 H 1.09008 * 109.46702 * 5.90500 * 3 2 1 30 30 H 1.08993 * 109.47566 * 245.90785 * 3 2 1 31 31 H 1.09005 * 109.46876 * 35.15710 * 5 4 3 32 32 H 1.08995 * 109.48119 * 155.15925 * 5 4 3 33 33 H 0.96998 * 120.00948 * 180.02562 * 9 8 6 34 34 H 1.09012 * 109.45769 * 61.29657 * 18 16 14 35 35 H 1.09001 * 109.46719 * 301.32977 * 18 16 14 36 36 H 1.08997 * 109.49491 * 58.59813 * 19 18 16 37 37 H 1.09004 * 109.49626 * 178.66044 * 19 18 16 38 38 H 1.09000 * 109.59042 * 174.42217 * 20 19 18 39 39 H 1.08994 * 109.58656 * 294.84972 * 20 19 18 40 40 H 0.97002 * 120.00360 * 5.05311 * 23 22 21 41 41 H 0.97002 * 120.00012 * 185.05194 * 23 22 21 42 42 H 1.08996 * 109.58695 * 173.39439 * 25 21 20 43 43 H 1.08997 * 109.58481 * 293.82234 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0091 1.3230 1.1188 5 6 2.5644 1.7523 2.4470 6 6 2.6419 3.2544 2.5415 7 1 2.9882 3.8314 1.6968 8 6 2.2708 3.8919 3.7062 9 7 1.8496 3.1893 4.7351 10 14 2.3662 5.7538 3.8231 11 1 1.4912 6.3603 2.7878 12 1 1.9155 6.1891 5.1695 13 1 3.7681 6.1923 3.6051 14 6 4.2882 0.9444 0.9263 15 8 4.6368 0.5119 -0.1519 16 6 5.2853 1.0585 2.0504 17 1 4.7912 0.8461 2.9985 18 6 6.4203 0.0560 1.8302 19 6 7.4164 0.1486 2.9884 20 6 8.0165 1.5575 3.0293 21 7 6.9222 2.5358 3.0949 22 6 6.8927 3.4690 4.0668 23 7 7.8159 3.4489 5.0485 24 8 6.0334 4.3291 4.0579 25 6 5.8608 2.4776 2.0805 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3598 2.1309 0.1057 30 1 2.6085 1.4100 -0.9381 31 1 1.5352 1.4308 2.6071 32 1 3.2065 1.3069 3.2069 33 1 1.5881 3.6378 5.5544 34 1 6.9298 0.2843 0.8939 35 1 6.0101 -0.9528 1.7838 36 1 6.9023 -0.0553 3.9276 37 1 8.2121 -0.5821 2.8431 38 1 8.6508 1.6592 3.9099 39 1 8.6068 1.7295 2.1293 40 1 8.5442 2.8090 5.0164 41 1 7.7521 4.0744 5.7872 42 1 5.0728 3.1863 2.3352 43 1 6.2755 2.7246 1.1033 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359387740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:56 Heat of formation + Delta-G solvation = -40.683590 kcal Electronic energy + Delta-G solvation = -25512.116923 eV Core-core repulsion = 21979.033489 eV Total energy + Delta-G solvation = -3533.083434 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21425 -39.06148 -36.78958 -35.42042 -33.75338 -33.26795 -32.09057 -32.01284 -30.73554 -27.43092 -25.90143 -25.07081 -23.40269 -22.73645 -21.26485 -19.76390 -19.19936 -18.30311 -17.95544 -16.67386 -16.37324 -16.23164 -15.67083 -14.94816 -14.78042 -14.56252 -14.33340 -14.15054 -13.93576 -13.62712 -13.06550 -12.90208 -12.69181 -12.52149 -12.30583 -12.02515 -11.54546 -11.32041 -11.21445 -10.94327 -10.86453 -10.77392 -10.67898 -10.44431 -10.10011 -10.03223 -9.71885 -9.64153 -9.34705 -9.19397 -8.85350 -8.35256 -8.25510 -7.71614 -6.03566 -4.10325 2.60907 2.99580 3.41199 3.45265 3.47310 3.62977 3.65859 4.03819 4.34430 4.55744 4.88066 5.01404 5.07838 5.32430 5.33786 5.38981 5.44101 5.53012 5.59618 5.70176 5.79997 5.93573 5.99775 6.08072 6.18946 6.22900 6.24398 6.39877 6.54428 6.59604 6.82461 6.85721 6.96620 7.07998 7.10299 7.23572 7.27821 7.57464 7.88358 8.15489 8.20347 8.36555 8.87338 9.02258 9.03407 9.59538 11.03113 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.008182 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.797458 B = 3421.368702 C = 5498.338694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C 0.142 3.858 4 N -0.588 5.588 5 C 0.238 3.762 6 C -0.537 4.537 7 H 0.060 0.940 8 C 0.080 3.920 9 N -0.891 5.891 10 Si 0.891 3.109 11 H -0.282 1.282 12 H -0.291 1.291 13 H -0.260 1.260 14 C 0.521 3.479 15 O -0.574 6.574 16 C -0.116 4.116 17 H 0.102 0.898 18 C -0.100 4.100 19 C -0.134 4.134 20 C 0.112 3.888 21 N -0.624 5.624 22 C 0.703 3.297 23 N -0.875 5.875 24 O -0.565 6.565 25 C 0.137 3.863 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.390 0.610 41 H 0.410 0.590 42 H 0.132 0.868 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.455 -5.911 -1.557 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.173 4.173 3 C 0.019 3.981 4 N -0.316 5.316 5 C 0.118 3.882 6 C -0.575 4.575 7 H 0.078 0.922 8 C -0.124 4.124 9 N -0.529 5.529 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.217 1.217 13 H -0.184 1.184 14 C 0.309 3.691 15 O -0.455 6.455 16 C -0.138 4.138 17 H 0.120 0.880 18 C -0.138 4.138 19 C -0.172 4.172 20 C -0.012 4.012 21 N -0.363 5.363 22 C 0.402 3.598 23 N -0.446 5.446 24 O -0.439 6.439 25 C 0.013 3.987 26 H 0.110 0.890 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.220 0.780 41 H 0.241 0.759 42 H 0.150 0.850 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.894 -5.566 -2.059 11.537 hybrid contribution 0.289 0.774 0.710 1.089 sum 10.183 -4.792 -1.349 11.334 Atomic orbital electron populations 1.23761 0.95806 1.01526 1.01944 1.23357 0.96040 0.99253 0.98673 1.20428 0.92108 0.94800 0.90726 1.48272 1.08265 1.62757 1.12349 1.19498 0.96222 0.95447 0.76991 1.21266 1.45616 0.91156 0.99489 0.92207 1.24789 0.93860 0.98546 0.95191 1.69902 1.43494 1.35878 1.03617 0.86628 0.79497 0.85428 0.76641 1.20822 1.21656 1.18402 1.20289 0.83065 0.77131 0.88627 1.90582 1.79569 1.48030 1.27351 1.21612 0.95369 0.97301 0.99530 0.87999 1.21356 0.95443 0.98787 0.98260 1.21936 0.99276 0.96155 0.99875 1.21608 0.89219 0.88872 1.01523 1.47187 1.26247 1.32562 1.30293 1.15912 0.81985 0.82170 0.79698 1.43175 1.31083 1.43030 1.27291 1.91091 1.38267 1.37718 1.76855 1.21547 0.90854 0.96593 0.89656 0.88987 0.88410 0.87959 0.89825 0.90094 0.94801 0.94382 0.92736 0.90970 0.91740 0.91338 0.90799 0.90889 0.91503 0.78006 0.75858 0.85021 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 14.32 29.02 0.42 -2.47 16 2 C -0.15 -2.61 9.84 -36.02 -0.35 -2.96 16 3 C 0.14 2.70 5.88 -5.19 -0.03 2.67 16 4 N -0.59 -12.45 2.44 -176.43 -0.43 -12.88 16 5 C 0.24 5.73 5.05 -5.19 -0.03 5.70 16 6 C -0.54 -14.24 7.47 -34.44 -0.26 -14.50 16 7 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 8 C 0.08 2.22 5.46 -17.82 -0.10 2.12 16 9 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 10 Si 0.89 22.57 29.54 -169.99 -5.02 17.54 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.26 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.52 10.72 6.78 -10.99 -0.07 10.64 16 15 O -0.57 -12.51 15.67 5.55 0.09 -12.43 16 16 C -0.12 -2.12 2.03 -91.67 -0.19 -2.31 16 17 H 0.10 2.03 5.95 -51.93 -0.31 1.72 16 18 C -0.10 -1.47 4.67 -26.69 -0.12 -1.59 16 19 C -0.13 -1.52 6.08 -26.61 -0.16 -1.68 16 20 C 0.11 1.26 6.43 -3.71 -0.02 1.23 16 21 N -0.62 -10.12 2.97 -178.52 -0.53 -10.66 16 22 C 0.70 12.68 8.57 -86.92 -0.75 11.94 16 23 N -0.87 -10.79 8.79 27.63 0.24 -10.55 16 24 O -0.56 -13.48 16.61 5.29 0.09 -13.39 16 25 C 0.14 2.60 5.68 -3.72 -0.02 2.58 16 26 H 0.09 1.20 8.06 -52.49 -0.42 0.77 16 27 H 0.10 1.43 7.84 -52.49 -0.41 1.02 16 28 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 29 H 0.08 1.59 7.76 -51.92 -0.40 1.18 16 30 H 0.08 1.52 7.35 -51.93 -0.38 1.14 16 31 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.04 0.96 5.72 -51.93 -0.30 0.67 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.07 1.08 7.92 -51.92 -0.41 0.67 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.60 5.57 -51.93 -0.29 0.31 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.39 3.38 6.29 -40.82 -0.26 3.12 16 41 H 0.41 4.64 8.93 -40.82 -0.36 4.27 16 42 H 0.13 3.08 4.90 -51.93 -0.25 2.83 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -33.28 348.11 -7.57 -40.84 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.30 Total: 9.74 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: -1.69 Total: 11.38 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.02 Total: -58.94 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: 0.17 Total: -25.82 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.28 -7.57 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359387740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.161 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds