Wall clock time and date at job start Tue Mar 31 2020 04:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47427 * 2 1 4 4 C 1.34949 * 126.04266 * 125.25549 * 3 2 1 5 5 C 1.35321 * 107.74490 * 180.15133 * 4 3 2 6 6 C 1.50696 * 126.03500 * 179.87397 * 5 4 3 7 7 N 1.46492 * 109.47548 * 274.03643 * 6 5 4 8 8 C 1.46497 * 119.99996 * 90.20898 * 7 6 5 9 9 C 1.53002 * 109.47120 * 83.97455 * 8 7 6 10 10 O 1.42896 * 109.47210 * 65.26413 * 9 8 7 11 11 C 1.34776 * 119.99867 * 270.21391 * 7 6 5 12 12 O 1.21277 * 120.00102 * 359.97438 * 11 7 6 13 13 C 1.50711 * 119.99763 * 179.97438 * 11 7 6 14 14 C 1.53007 * 109.46579 * 180.02562 * 13 11 7 15 15 C 1.50702 * 109.46494 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00137 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99620 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00111 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99760 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47443 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47053 * 120.00391 * 19 17 15 22 22 H 1.48497 * 109.47033 * 240.00094 * 19 17 15 23 23 C 1.39867 * 107.92167 * 359.60847 * 5 4 3 24 24 N 1.30841 * 108.20031 * 0.24166 * 23 5 4 25 25 H 1.08996 * 109.46954 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47315 * 300.00784 * 1 2 3 27 27 H 1.09000 * 109.46756 * 60.00694 * 1 2 3 28 28 H 1.08991 * 109.47368 * 239.99406 * 2 1 3 29 29 H 1.09000 * 109.46756 * 119.99306 * 2 1 3 30 30 H 1.07998 * 126.12486 * 359.97438 * 4 3 2 31 31 H 1.09007 * 109.47066 * 154.03328 * 6 5 4 32 32 H 1.09006 * 109.47228 * 34.03960 * 6 5 4 33 33 H 1.08996 * 109.47524 * 323.97064 * 8 7 6 34 34 H 1.09003 * 109.47077 * 203.97017 * 8 7 6 35 35 H 1.08997 * 109.46810 * 185.26455 * 9 8 7 36 36 H 1.09000 * 109.46690 * 305.25830 * 9 8 7 37 37 H 0.96708 * 113.99814 * 180.02562 * 10 9 8 38 38 H 1.08998 * 109.46602 * 299.99668 * 13 11 7 39 39 H 1.08991 * 109.47232 * 59.99827 * 13 11 7 40 40 H 1.08997 * 109.47038 * 299.99618 * 14 13 11 41 41 H 1.08991 * 109.47563 * 59.99928 * 14 13 11 42 42 H 0.97008 * 119.99683 * 179.97438 * 18 17 15 43 43 H 1.07993 * 125.89739 * 180.22579 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8769 1.9198 0.8910 5 6 3.0714 3.2138 0.5461 6 6 3.9547 4.2000 1.2659 7 7 3.2029 4.8225 2.3582 8 6 3.2142 4.2182 3.6927 9 6 4.4592 4.6815 4.4518 10 8 4.3808 6.0897 4.6810 11 6 2.5006 5.9510 2.1354 12 8 2.4916 6.4515 1.0307 13 6 1.7267 6.5911 3.2591 14 6 1.0241 7.8485 2.7428 15 6 0.2496 8.4881 3.8662 16 1 0.2581 8.0427 4.8501 17 6 -0.4688 9.6426 3.6383 18 7 -0.4787 10.1852 2.4404 19 14 -1.4282 10.4359 5.0310 20 1 -1.2547 9.6361 6.2702 21 1 -0.9238 11.8142 5.2573 22 1 -2.8684 10.4885 4.6729 23 6 2.3126 3.4724 -0.6000 24 7 1.6810 2.3746 -0.9283 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 3.3259 1.4102 1.7308 31 1 4.2849 4.9691 0.5675 32 1 4.8231 3.6811 1.6720 33 1 3.2284 3.1323 3.5998 34 1 2.3214 4.5245 4.2378 35 1 4.5169 4.1604 5.4074 36 1 5.3483 4.4581 3.8620 37 1 5.1391 6.4533 5.1585 38 1 0.9831 5.8881 3.6346 39 1 2.4105 6.8610 4.0637 40 1 1.7673 8.5516 2.3669 41 1 0.3401 7.5782 1.9383 42 1 -0.9845 10.9973 2.2800 43 1 2.2574 4.4154 -1.1234 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360466293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:48 Heat of formation + Delta-G solvation = -12.993442 kcal Electronic energy + Delta-G solvation = -24076.563031 eV Core-core repulsion = 20544.680332 eV Total energy + Delta-G solvation = -3531.882699 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.21639 -39.25268 -36.87958 -35.20645 -34.35610 -33.31833 -31.39632 -30.45953 -30.12623 -28.71287 -26.41566 -24.78706 -23.77308 -22.78855 -21.36177 -20.71904 -20.04220 -18.25247 -17.51603 -17.04232 -16.78847 -15.86820 -15.65369 -15.39414 -15.14713 -14.37257 -14.32921 -14.19442 -14.02420 -13.46586 -13.34884 -13.07388 -12.71807 -12.53787 -12.41582 -12.30339 -12.05725 -11.88386 -11.61293 -11.55436 -11.34255 -10.91954 -10.84176 -10.49849 -10.45361 -9.99166 -9.71972 -9.42596 -9.37952 -9.02698 -8.89401 -8.39653 -8.24519 -8.17690 -5.84440 -3.87360 1.87159 2.46901 2.77624 3.39342 3.45860 3.48892 3.49957 3.67208 4.27112 4.29726 4.56674 4.66066 4.71451 4.88369 4.99421 5.07293 5.11097 5.16799 5.28038 5.31298 5.45565 5.49882 5.50382 5.60514 5.67258 5.80862 5.87427 5.90257 5.95646 6.23568 6.45303 6.68526 6.73629 6.93500 7.00675 7.17250 7.72350 7.75433 7.88711 7.95096 8.05723 8.22546 8.54497 8.99668 9.22189 9.75040 11.26736 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.003844 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.201859 B = 7281.524371 C = 8194.324062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 N -0.378 5.378 4 C 0.058 3.942 5 C -0.247 4.247 6 C 0.192 3.808 7 N -0.617 5.617 8 C 0.112 3.888 9 C 0.058 3.942 10 O -0.556 6.556 11 C 0.524 3.476 12 O -0.536 6.536 13 C -0.130 4.130 14 C 0.038 3.962 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.073 3.927 24 N -0.299 5.299 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.168 0.832 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.375 0.625 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.022 0.978 41 H 0.019 0.981 42 H 0.258 0.742 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.285 -22.961 1.553 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 N -0.160 5.160 4 C -0.089 4.089 5 C -0.260 4.260 6 C 0.069 3.931 7 N -0.352 5.352 8 C -0.012 4.012 9 C -0.021 4.021 10 O -0.361 6.361 11 C 0.315 3.685 12 O -0.411 6.411 13 C -0.170 4.170 14 C 0.001 3.999 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.113 4.113 24 N -0.120 5.120 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.185 0.815 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.222 0.778 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 9.763 -23.313 -0.297 25.276 hybrid contribution 0.549 0.702 1.752 1.966 sum 10.312 -22.611 1.456 24.894 Atomic orbital electron populations 1.22056 0.93803 1.02630 1.03904 1.21610 0.96135 0.77759 1.03294 1.48684 1.35549 1.10153 1.21660 1.22253 0.95845 0.94738 0.96099 1.20536 1.09303 0.94774 1.01373 1.19477 0.91000 0.93736 0.88927 1.48122 1.51421 1.26711 1.08911 1.21542 0.98755 0.97192 0.83731 1.22644 0.98370 0.83020 0.98068 1.86664 1.47873 1.21439 1.80163 1.21478 0.77838 0.78506 0.90710 1.90620 1.62333 1.62339 1.25818 1.21928 0.98592 0.99954 0.96501 1.18878 0.95067 0.89973 0.95993 1.21286 1.29245 1.09045 0.96217 0.92698 1.25021 0.96838 0.97195 0.95422 1.70019 1.41857 1.20488 1.20655 0.86576 0.79781 0.79279 0.82555 1.19803 1.21096 1.21147 1.23945 0.94273 0.97083 0.96024 1.77355 1.23706 0.97172 1.13759 0.90889 0.91971 0.91005 0.90095 0.88989 0.81517 0.89314 0.91014 0.90182 0.88989 0.93272 0.93878 0.77832 0.91388 0.88416 0.95963 0.96278 0.93176 0.79841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.10 37.16 0.38 -0.95 16 2 C 0.13 1.02 7.23 -4.04 -0.03 0.99 16 3 N -0.38 -4.44 3.68 -61.37 -0.23 -4.67 16 4 C 0.06 0.62 11.36 -17.22 -0.20 0.42 16 5 C -0.25 -3.29 5.68 -105.05 -0.60 -3.89 16 6 C 0.19 2.50 5.91 -5.20 -0.03 2.47 16 7 N -0.62 -9.32 2.42 -175.06 -0.42 -9.74 16 8 C 0.11 1.27 5.73 -4.04 -0.02 1.25 16 9 C 0.06 0.56 7.38 37.16 0.27 0.83 16 10 O -0.56 -7.04 11.29 -35.23 -0.40 -7.44 16 11 C 0.52 10.87 7.48 -10.98 -0.08 10.79 16 12 O -0.54 -13.11 15.56 5.56 0.09 -13.03 16 13 C -0.13 -2.91 4.05 -27.87 -0.11 -3.02 16 14 C 0.04 1.10 4.26 -27.88 -0.12 0.98 16 15 C -0.52 -15.42 9.11 -34.44 -0.31 -15.73 16 16 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -28.39 13.29 55.43 0.74 -27.65 16 19 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C 0.07 1.14 11.96 -17.36 -0.21 0.93 16 24 N -0.30 -4.56 12.42 30.62 0.38 -4.18 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.09 1.33 7.43 -51.93 -0.39 0.94 16 32 H 0.07 0.69 8.00 -51.93 -0.42 0.27 16 33 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 34 H 0.09 1.17 6.23 -51.93 -0.32 0.85 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 37 H 0.37 3.07 9.12 45.56 0.42 3.49 16 38 H 0.07 1.43 7.42 -51.93 -0.39 1.05 16 39 H 0.10 2.11 5.94 -51.93 -0.31 1.80 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.02 0.59 8.10 -51.93 -0.42 0.17 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.18 2.92 8.06 -52.49 -0.42 2.50 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -39.06 362.70 -6.56 -45.62 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.01 Total: 1.63 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.16 Total: -3.34 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.47 Total: -46.24 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.31 Total: -20.47 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -39.06 -6.56 -45.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360466293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.624 kcal (2) G-P(sol) polarization free energy of solvation -39.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds