Wall clock time and date at job start Tue Mar 31 2020 04:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46140 * 2 1 4 4 C 1.52819 * 109.33698 * 240.28573 * 2 1 3 5 5 C 1.51186 * 108.68971 * 159.98112 * 4 2 1 6 6 O 1.21283 * 119.76700 * 251.17756 * 5 4 2 7 7 N 1.33630 * 120.46210 * 71.20569 * 5 4 2 8 8 C 1.46922 * 120.62565 * 0.23942 * 7 5 4 9 9 C 1.53219 * 108.82184 * 288.06693 * 8 7 5 10 10 N 1.46066 * 109.72413 * 81.59723 * 9 8 7 11 11 C 1.34774 * 118.73567 * 116.16015 * 10 9 8 12 12 O 1.21588 * 120.00447 * 185.94139 * 11 10 9 13 13 N 1.34776 * 119.99395 * 5.93907 * 11 10 9 14 14 C 1.46508 * 119.99621 * 185.97542 * 13 11 10 15 15 C 1.53001 * 109.46767 * 175.38734 * 14 13 11 16 16 C 1.50700 * 115.54823 * 277.81696 * 15 14 13 17 17 H 1.08006 * 119.99688 * 143.64514 * 16 15 14 18 18 C 1.37867 * 120.00282 * 323.64207 * 16 15 14 19 19 N 1.31516 * 120.00487 * 339.40754 * 18 16 15 20 20 Si 1.86806 * 120.00134 * 159.40819 * 18 16 15 21 21 H 1.48503 * 109.46980 * 60.00034 * 20 18 16 22 22 H 1.48499 * 109.46974 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46832 * 300.00084 * 20 18 16 24 24 C 1.52999 * 117.49720 * 132.11512 * 15 14 13 25 25 C 1.53000 * 117.50221 * 63.49068 * 15 14 13 26 26 H 1.09004 * 109.47136 * 292.23743 * 1 2 3 27 27 H 1.09004 * 109.47120 * 52.23262 * 1 2 3 28 28 H 1.08995 * 109.47330 * 172.23808 * 1 2 3 29 29 H 1.08997 * 109.63782 * 40.17740 * 4 2 1 30 30 H 1.09005 * 109.65435 * 279.79081 * 4 2 1 31 31 H 0.97008 * 119.68665 * 180.26500 * 7 5 4 32 32 H 1.09006 * 109.57700 * 168.26649 * 8 7 5 33 33 H 1.08992 * 109.57924 * 47.86820 * 8 7 5 34 34 H 1.09004 * 109.43069 * 321.52375 * 9 8 7 35 35 H 1.08997 * 109.39049 * 201.65200 * 9 8 7 36 36 H 0.97001 * 120.00467 * 6.24849 * 13 11 10 37 37 H 1.09006 * 109.46988 * 295.38551 * 14 13 11 38 38 H 1.08995 * 109.47033 * 55.38947 * 14 13 11 39 39 H 0.97001 * 120.00591 * 185.01689 * 19 18 16 40 40 H 1.08999 * 117.50137 * 359.97438 * 24 15 14 41 41 H 1.09004 * 117.50259 * 145.02127 * 24 15 14 42 42 H 1.08990 * 117.50202 * 214.97620 * 25 15 14 43 43 H 1.09007 * 117.49757 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0360 -0.7148 -1.2524 5 6 3.4661 -0.2947 -1.5054 6 8 3.7238 0.4302 -2.4430 7 7 4.4482 -0.7169 -0.7036 8 6 4.1580 -1.6001 0.4341 9 6 3.4378 -0.7905 1.5173 10 7 2.0170 -0.6886 1.1938 11 6 1.1209 -1.2561 2.0252 12 8 -0.0571 -1.2800 1.7248 13 7 1.5305 -1.7973 3.1895 14 6 0.5806 -2.5287 4.0317 15 6 1.3196 -3.1339 5.2268 16 6 2.0246 -4.4393 4.9618 17 1 2.9707 -4.6486 5.4390 18 6 1.4620 -5.3662 4.1104 19 7 0.1737 -5.3228 3.8495 20 14 2.5295 -6.6840 3.3272 21 1 3.1579 -7.5085 4.3905 22 1 1.6908 -7.5495 2.4597 23 1 3.5885 -6.0412 2.5085 24 6 0.7060 -2.9308 6.6135 25 6 1.9715 -2.1674 6.2177 26 1 -0.3633 0.3889 0.9513 27 1 -0.3633 0.6294 -0.8124 28 1 -0.3634 -1.0182 -0.1388 29 1 1.4172 -0.4396 -2.1064 30 1 1.9927 -1.7935 -1.1016 31 1 5.3613 -0.4373 -0.8741 32 1 5.0904 -1.9979 0.8348 33 1 3.5197 -2.4204 0.1062 34 1 3.8699 0.2088 1.5707 35 1 3.5557 -1.2883 2.4797 36 1 2.4533 -1.6992 3.4720 37 1 -0.1895 -1.8449 4.3890 38 1 0.1175 -3.3253 3.4495 39 1 -0.2355 -6.0169 3.3094 40 1 -0.2240 -2.3656 6.6745 41 1 0.8120 -3.7413 7.3346 42 1 2.9100 -2.4758 6.6782 43 1 1.8742 -1.1002 6.0179 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374013163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:56 Heat of formation + Delta-G solvation = -3.497135 kcal Electronic energy + Delta-G solvation = -25325.622679 eV Core-core repulsion = 21794.151771 eV Total energy + Delta-G solvation = -3531.470908 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85874 -39.33522 -37.11744 -36.30561 -34.76962 -33.89110 -32.32163 -31.85586 -28.54678 -27.85385 -26.12859 -25.18726 -23.53579 -22.29677 -21.30838 -20.11982 -19.44050 -19.20649 -17.89222 -17.19852 -16.84309 -16.39942 -15.71195 -15.51407 -14.85067 -14.57575 -14.29288 -14.04504 -13.97505 -13.36774 -13.21081 -13.11913 -12.73863 -12.54654 -12.26945 -12.12304 -11.85221 -11.77144 -11.53220 -11.41141 -11.12494 -11.00512 -10.85312 -10.57393 -10.37591 -9.90548 -9.52055 -9.44913 -9.32967 -8.87743 -8.68540 -8.47087 -8.26140 -7.88439 -6.20009 -4.18988 2.50967 2.91820 3.14521 3.17384 3.26278 3.26883 3.69274 4.24317 4.25274 4.47006 4.79210 4.83728 4.86985 4.94750 5.00106 5.11995 5.21807 5.39928 5.50191 5.57398 5.69288 5.83308 5.93854 5.97615 6.24925 6.36722 6.46205 6.52974 6.55308 6.61948 6.64269 6.81784 6.92605 6.94470 7.09825 7.21593 7.30016 7.46159 7.57650 7.90808 8.09260 8.28691 8.53590 8.75401 9.16930 9.38077 10.82182 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.005249 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.105478 B = 5332.597882 C = 5939.282107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.174 3.826 3 H 0.069 0.931 4 C -0.156 4.156 5 C 0.520 3.480 6 O -0.555 6.555 7 N -0.724 5.724 8 C 0.089 3.911 9 C 0.092 3.908 10 N -0.634 5.634 11 C 0.695 3.305 12 O -0.582 6.582 13 N -0.724 5.724 14 C 0.161 3.839 15 C 0.041 3.959 16 C -0.501 4.501 17 H 0.062 0.938 18 C 0.077 3.923 19 N -0.863 5.863 20 Si 0.887 3.113 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.192 4.192 25 C -0.212 4.212 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.399 0.601 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.388 0.612 37 H 0.029 0.971 38 H 0.118 0.882 39 H 0.266 0.734 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.869 7.749 -5.220 11.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.069 3.931 3 H 0.087 0.913 4 C -0.197 4.197 5 C 0.307 3.693 6 O -0.434 6.434 7 N -0.377 5.377 8 C -0.037 4.037 9 C -0.034 4.034 10 N -0.374 5.374 11 C 0.397 3.603 12 O -0.461 6.461 13 N -0.379 5.379 14 C 0.038 3.962 15 C 0.040 3.960 16 C -0.538 4.538 17 H 0.080 0.920 18 C -0.128 4.128 19 N -0.498 5.498 20 Si 0.714 3.286 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.231 4.231 25 C -0.249 4.249 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.235 0.765 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.224 0.776 37 H 0.048 0.952 38 H 0.136 0.864 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.758 7.941 -6.037 11.518 hybrid contribution 1.553 -0.718 -0.059 1.712 sum 7.311 7.222 -6.096 11.949 Atomic orbital electron populations 1.22285 0.91101 1.03645 1.01507 1.20622 0.96864 0.93995 0.81598 0.91327 1.22508 0.92680 1.03400 1.01109 1.20682 0.88252 0.79268 0.81100 1.90735 1.84584 1.37510 1.30522 1.45957 1.10587 1.50889 1.30249 1.22274 1.02050 0.92915 0.86452 1.21983 0.81470 1.01043 0.98856 1.47087 1.05266 1.59996 1.25014 1.16132 0.84914 0.78611 0.80681 1.90967 1.16001 1.63641 1.75491 1.45664 1.14386 1.57492 1.20357 1.21174 0.88840 0.94137 0.92043 1.19165 0.96661 0.94013 0.86149 1.20393 1.06209 0.99897 1.27300 0.91976 1.24951 0.94553 0.97389 0.95869 1.69850 1.09354 1.33302 1.37282 0.86739 0.80767 0.81344 0.79702 1.20220 1.21230 1.20093 1.22944 0.94436 1.02089 1.03622 1.22878 0.96747 0.96127 1.09197 0.90246 0.94845 0.90041 0.87422 0.88573 0.76492 0.88137 0.89631 0.90785 0.88165 0.77599 0.95219 0.86431 0.92339 0.91549 0.90163 0.90577 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 7.44 37.16 0.28 -1.59 16 2 C 0.17 2.29 3.19 -68.21 -0.22 2.07 16 3 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16 4 C -0.16 -1.91 4.96 -27.74 -0.14 -2.04 16 5 C 0.52 6.71 7.11 -11.26 -0.08 6.63 16 6 O -0.56 -9.13 17.91 5.55 0.10 -9.03 16 7 N -0.72 -7.22 5.30 -59.99 -0.32 -7.53 16 8 C 0.09 0.82 6.49 -3.70 -0.02 0.80 16 9 C 0.09 0.97 6.17 -4.16 -0.03 0.95 16 10 N -0.63 -8.82 2.78 -172.37 -0.48 -9.30 16 11 C 0.69 12.55 8.03 -86.92 -0.70 11.85 16 12 O -0.58 -12.26 11.41 5.29 0.06 -12.20 16 13 N -0.72 -13.39 5.35 -65.22 -0.35 -13.73 16 14 C 0.16 3.58 5.37 -4.04 -0.02 3.56 16 15 C 0.04 0.92 1.76 -155.66 -0.27 0.64 16 16 C -0.50 -12.30 8.98 -34.44 -0.31 -12.61 16 17 H 0.06 1.52 7.90 -52.48 -0.41 1.10 16 18 C 0.08 1.94 5.05 -17.82 -0.09 1.85 16 19 N -0.86 -22.81 11.11 55.43 0.62 -22.19 16 20 Si 0.89 19.39 29.59 -169.99 -5.03 14.36 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 24 C -0.19 -4.09 9.88 -26.73 -0.26 -4.35 16 25 C -0.21 -4.09 9.75 -26.73 -0.26 -4.35 16 26 H 0.08 1.32 6.47 -51.93 -0.34 0.99 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 1.36 6.72 -51.93 -0.35 1.01 16 29 H 0.11 1.25 7.98 -51.93 -0.41 0.83 16 30 H 0.10 1.20 7.09 -51.93 -0.37 0.83 16 31 H 0.40 3.36 8.91 -40.82 -0.36 2.99 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.94 7.03 -51.93 -0.37 0.57 16 34 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 35 H 0.10 1.06 5.34 -51.93 -0.28 0.78 16 36 H 0.39 6.31 5.70 -40.82 -0.23 6.08 16 37 H 0.03 0.67 7.93 -51.93 -0.41 0.26 16 38 H 0.12 3.05 5.38 -51.93 -0.28 2.77 16 39 H 0.27 6.82 8.32 -40.82 -0.34 6.48 16 40 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 41 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -29.73 338.52 -8.74 -38.47 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -6.31 Total: 12.64 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.13 Total: 3.41 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.53 Total: -52.75 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: 0.16 Total: -21.22 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.73 -8.74 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374013163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.971 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds