Wall clock time and date at job start Tue Mar 31 2020 03:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.29848 * 2 1 4 4 C 1.52936 * 109.15246 * 119.48184 * 2 1 3 5 5 C 1.53346 * 108.66350 * 69.42693 * 4 2 1 6 6 H 1.09003 * 109.70548 * 307.79777 * 5 4 2 7 7 C 1.50697 * 109.67786 * 187.27782 * 5 4 2 8 8 O 1.21280 * 119.99623 * 339.00732 * 7 5 4 9 9 N 1.34778 * 120.00192 * 159.00284 * 7 5 4 10 10 C 1.46956 * 120.59535 * 174.82076 * 9 7 5 11 11 C 1.53372 * 108.77767 * 235.16403 * 10 9 7 12 12 N 1.47045 * 108.59061 * 310.83159 * 11 10 9 13 13 C 1.36933 * 120.44874 * 235.04396 * 12 11 10 14 14 H 1.08001 * 120.00340 * 34.47860 * 13 12 11 15 15 C 1.38816 * 120.00102 * 214.47363 * 13 12 11 16 16 N 1.31617 * 119.99892 * 15.60239 * 15 13 12 17 17 Si 1.86804 * 119.99858 * 195.60873 * 15 13 12 18 18 H 1.48497 * 109.47408 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46759 * 120.00071 * 17 15 13 20 20 H 1.48502 * 109.46663 * 239.99711 * 17 15 13 21 21 C 1.46965 * 118.95197 * 54.95801 * 12 11 10 22 22 C 1.46964 * 120.59113 * 354.84198 * 9 7 5 23 23 C 1.53071 * 108.42338 * 67.54694 * 5 4 2 24 24 C 1.50184 * 109.89023 * 311.09949 * 23 5 4 25 25 O 1.21275 * 118.24286 * 197.55861 * 24 23 5 26 26 N 1.33356 * 123.50576 * 17.58233 * 24 23 5 27 27 H 1.09001 * 109.46688 * 179.58555 * 1 2 3 28 28 H 1.09002 * 109.46776 * 299.58295 * 1 2 3 29 29 H 1.08995 * 109.47055 * 59.58329 * 1 2 3 30 30 H 1.08998 * 109.59883 * 309.68639 * 4 2 1 31 31 H 1.09000 * 109.62585 * 189.18794 * 4 2 1 32 32 H 1.09008 * 109.60909 * 354.99263 * 10 9 7 33 33 H 1.09004 * 109.61111 * 115.33092 * 10 9 7 34 34 H 1.08998 * 109.61205 * 70.40546 * 11 10 9 35 35 H 1.08998 * 109.60822 * 190.91869 * 11 10 9 36 36 H 0.96997 * 119.99764 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.60479 * 185.12584 * 21 12 11 38 38 H 1.08995 * 109.75419 * 64.69934 * 21 12 11 39 39 H 1.08998 * 109.60987 * 244.49455 * 22 9 7 40 40 H 1.09003 * 109.61470 * 4.83612 * 22 9 7 41 41 H 1.08993 * 109.40261 * 71.22730 * 23 5 4 42 42 H 1.09002 * 109.40124 * 191.06161 * 23 5 4 43 43 H 0.96997 * 117.94316 * 177.77437 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0318 -0.7110 1.2576 5 6 1.7105 -2.2056 1.1376 6 1 0.6541 -2.3368 0.9033 7 6 2.0323 -2.8997 2.4359 8 8 2.8048 -2.3909 3.2203 9 7 1.4615 -4.0858 2.7255 10 6 1.8503 -4.8281 3.9327 11 6 2.2938 -6.2382 3.5239 12 7 1.2731 -6.8111 2.6338 13 6 0.6937 -8.0165 2.9277 14 1 0.5156 -8.2936 3.9563 15 6 0.3351 -8.8823 1.9036 16 7 0.8150 -8.7023 0.6914 17 14 -0.8289 -10.3027 2.2461 18 1 -1.2228 -10.2858 3.6778 19 1 -2.0397 -10.1660 1.3974 20 1 -0.1488 -11.5857 1.9354 21 6 0.8844 -6.0687 1.4265 22 6 0.4395 -4.6602 1.8393 23 6 2.5649 -2.7952 0.0126 24 6 2.4580 -1.9357 -1.2143 25 8 2.7959 -2.4096 -2.2782 26 7 2.0118 -0.6791 -1.1962 27 1 -0.3633 -1.0277 -0.0074 28 1 -0.3633 0.5074 0.8937 29 1 -0.3633 0.5203 -0.8862 30 1 1.5323 -0.2990 2.1345 31 1 3.1093 -0.5749 1.3499 32 1 2.6744 -4.3147 4.4283 33 1 0.9997 -4.8945 4.6112 34 1 3.2465 -6.1837 2.9971 35 1 2.3994 -6.8605 4.4125 36 1 0.5647 -9.3075 -0.0241 37 1 0.0604 -6.5821 0.9309 38 1 1.7338 -5.9997 0.7470 39 1 -0.5124 -4.7173 2.3673 40 1 0.3295 -4.0344 0.9536 41 1 3.6054 -2.8401 0.3337 42 1 2.2139 -3.8007 -0.2196 43 1 2.0073 -0.1863 -2.0317 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408202377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:36 Heat of formation + Delta-G solvation = -49.474788 kcal Electronic energy + Delta-G solvation = -25202.532002 eV Core-core repulsion = 21669.067353 eV Total energy + Delta-G solvation = -3533.464649 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.91676 -39.39570 -37.19439 -36.59930 -33.98702 -33.33543 -31.33781 -31.07977 -30.24707 -27.38618 -27.10922 -24.92489 -23.50878 -22.84738 -22.45017 -20.51113 -19.05296 -18.64465 -17.40594 -17.16211 -16.49195 -16.15768 -15.55570 -15.17768 -14.81119 -14.77886 -14.34324 -14.12843 -13.83225 -13.66892 -13.52071 -13.36871 -13.23786 -12.82082 -12.42571 -12.27792 -11.82137 -11.70944 -11.56283 -11.41587 -11.06394 -10.97286 -10.86914 -10.80164 -10.51786 -10.32157 -10.17831 -10.04443 -9.83764 -9.31110 -9.26795 -8.62927 -8.32080 -6.67902 -5.89900 -3.40695 2.57033 2.80596 3.12716 3.30216 3.30676 3.39636 3.41503 4.28479 4.40147 4.45820 4.48054 4.64149 4.87745 4.93839 5.01796 5.10804 5.25393 5.30878 5.43010 5.51469 5.56196 5.65409 5.68307 5.78008 5.82500 5.85869 5.90685 6.02296 6.06514 6.14655 6.27088 6.38474 6.64507 6.74664 6.86033 7.11594 7.19290 7.33722 7.71368 7.81587 8.12768 8.35963 8.43339 9.08434 9.69109 10.29745 11.17680 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.004379 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.375286 B = 6392.270167 C = 7055.684524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.137 3.863 3 H 0.089 0.911 4 C -0.111 4.111 5 C -0.112 4.112 6 H 0.102 0.898 7 C 0.516 3.484 8 O -0.556 6.556 9 N -0.592 5.592 10 C 0.095 3.905 11 C 0.131 3.869 12 N -0.589 5.589 13 C -0.264 4.264 14 H 0.065 0.935 15 C 0.012 3.988 16 N -0.897 5.897 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.289 1.289 21 C 0.161 3.839 22 C 0.076 3.924 23 C -0.126 4.126 24 C 0.527 3.473 25 O -0.552 6.552 26 N -0.718 5.718 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.256 0.744 37 H 0.090 0.910 38 H 0.027 0.973 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 17.525 -0.043 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.031 3.969 3 H 0.107 0.893 4 C -0.149 4.149 5 C -0.134 4.134 6 H 0.120 0.880 7 C 0.304 3.696 8 O -0.435 6.435 9 N -0.324 5.324 10 C -0.029 4.029 11 C 0.004 3.996 12 N -0.311 5.311 13 C -0.393 4.393 14 H 0.083 0.917 15 C -0.189 4.189 16 N -0.540 5.540 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.216 1.216 21 C 0.035 3.965 22 C -0.048 4.048 23 C -0.166 4.166 24 C 0.314 3.686 25 O -0.430 6.430 26 N -0.370 5.370 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.131 0.869 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.009 17.255 -0.099 17.285 hybrid contribution -0.756 -0.654 -0.252 1.031 sum -1.765 16.601 -0.351 16.699 Atomic orbital electron populations 1.22361 0.94975 1.03065 1.02618 1.20999 0.94434 0.96545 0.84874 0.89290 1.21754 1.03277 0.92899 0.96946 1.21472 1.02185 0.95959 0.93756 0.87972 1.20271 0.80796 0.81070 0.87484 1.90645 1.37020 1.65390 1.50439 1.48057 1.39836 1.19204 1.25280 1.22234 1.00314 0.94197 0.86127 1.21339 0.91860 0.91222 0.95147 1.43905 1.42466 1.20169 1.24607 1.19163 1.34522 0.93164 0.92482 0.91737 1.25235 0.99878 0.97310 0.96441 1.70019 1.43797 1.38851 1.01285 0.86244 0.80610 0.82119 0.77893 1.20097 1.21417 1.21551 1.21070 0.99614 0.86852 0.88994 1.22761 0.90715 0.98445 0.92872 1.21642 1.03029 1.00426 0.91469 1.20044 0.75971 0.81782 0.90765 1.90781 1.49359 1.71479 1.31389 1.45587 1.65360 1.13874 1.12179 0.91806 0.91075 0.92078 0.89224 0.89887 0.90027 0.91942 0.95866 0.91412 0.93418 0.89218 0.95499 0.91602 0.91044 0.87583 0.86880 0.76705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.28 37.16 0.34 -0.81 16 2 C 0.14 1.02 3.84 -68.37 -0.26 0.76 16 3 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -1.07 4.12 -26.59 -0.11 -1.18 16 5 C -0.11 -1.35 1.66 -91.56 -0.15 -1.50 16 6 H 0.10 1.11 4.67 -51.93 -0.24 0.87 16 7 C 0.52 8.11 6.82 -10.99 -0.07 8.03 16 8 O -0.56 -10.10 15.63 5.56 0.09 -10.01 16 9 N -0.59 -9.97 2.95 -172.49 -0.51 -10.48 16 10 C 0.10 1.67 6.57 -3.60 -0.02 1.65 16 11 C 0.13 2.67 6.68 -3.55 -0.02 2.65 16 12 N -0.59 -13.94 2.93 -171.98 -0.50 -14.45 16 13 C -0.26 -6.89 9.50 -15.06 -0.14 -7.03 16 14 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 15 C 0.01 0.31 4.90 -17.43 -0.09 0.22 16 16 N -0.90 -25.12 11.58 55.49 0.64 -24.47 16 17 Si 0.90 20.82 29.58 -169.99 -5.03 15.79 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.16 3.51 5.47 -3.60 -0.02 3.49 16 22 C 0.08 1.28 6.31 -3.60 -0.02 1.25 16 23 C -0.13 -1.67 5.25 -28.10 -0.15 -1.81 16 24 C 0.53 7.08 7.71 -11.87 -0.09 6.99 16 25 O -0.55 -9.74 17.78 5.56 0.10 -9.65 16 26 N -0.72 -6.92 5.03 -54.85 -0.28 -7.20 16 27 H 0.06 0.50 6.53 -51.93 -0.34 0.17 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.08 1.40 7.02 -51.92 -0.36 1.04 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.09 2.16 6.44 -51.93 -0.33 1.83 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.00 5.01 -51.93 -0.26 0.74 16 41 H 0.11 1.45 8.09 -51.93 -0.42 1.03 16 42 H 0.11 1.66 7.55 -51.93 -0.39 1.27 16 43 H 0.40 3.33 8.80 -40.82 -0.36 2.97 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -32.31 336.37 -7.71 -40.01 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.47 Total: 2.68 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -0.81 Total: 12.71 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.65 Total: -56.60 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.19 Total: -19.66 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.31 -7.71 -40.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408202377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.462 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds