Wall clock time and date at job start Tue Mar 31 2020 03:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.29848 * 2 1 4 4 C 1.52936 * 109.15246 * 119.48184 * 2 1 3 5 5 C 1.53346 * 108.66350 * 69.42693 * 4 2 1 6 6 H 1.09003 * 109.70548 * 307.79777 * 5 4 2 7 7 C 1.50697 * 109.67786 * 187.27782 * 5 4 2 8 8 O 1.21280 * 119.99623 * 339.00732 * 7 5 4 9 9 N 1.34778 * 120.00192 * 159.00284 * 7 5 4 10 10 C 1.46956 * 120.59535 * 174.82076 * 9 7 5 11 11 C 1.53372 * 108.77767 * 235.16403 * 10 9 7 12 12 N 1.47045 * 108.59061 * 310.83159 * 11 10 9 13 13 C 1.36933 * 120.44874 * 235.04396 * 12 11 10 14 14 H 1.08001 * 120.00340 * 34.47860 * 13 12 11 15 15 C 1.38816 * 120.00102 * 214.47363 * 13 12 11 16 16 N 1.31617 * 119.99892 * 15.60239 * 15 13 12 17 17 Si 1.86804 * 119.99858 * 195.60873 * 15 13 12 18 18 H 1.48497 * 109.47408 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46759 * 120.00071 * 17 15 13 20 20 H 1.48502 * 109.46663 * 239.99711 * 17 15 13 21 21 C 1.46965 * 118.95197 * 54.95801 * 12 11 10 22 22 C 1.46964 * 120.59113 * 354.84198 * 9 7 5 23 23 C 1.53071 * 108.42338 * 67.54694 * 5 4 2 24 24 C 1.50184 * 109.89023 * 311.09949 * 23 5 4 25 25 O 1.21275 * 118.24286 * 197.55861 * 24 23 5 26 26 N 1.33356 * 123.50576 * 17.58233 * 24 23 5 27 27 H 1.09001 * 109.46688 * 179.58555 * 1 2 3 28 28 H 1.09002 * 109.46776 * 299.58295 * 1 2 3 29 29 H 1.08995 * 109.47055 * 59.58329 * 1 2 3 30 30 H 1.08998 * 109.59883 * 309.68639 * 4 2 1 31 31 H 1.09000 * 109.62585 * 189.18794 * 4 2 1 32 32 H 1.09008 * 109.60909 * 354.99263 * 10 9 7 33 33 H 1.09004 * 109.61111 * 115.33092 * 10 9 7 34 34 H 1.08998 * 109.61205 * 70.40546 * 11 10 9 35 35 H 1.08998 * 109.60822 * 190.91869 * 11 10 9 36 36 H 0.96997 * 119.99764 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.60479 * 185.12584 * 21 12 11 38 38 H 1.08995 * 109.75419 * 64.69934 * 21 12 11 39 39 H 1.08998 * 109.60987 * 244.49455 * 22 9 7 40 40 H 1.09003 * 109.61470 * 4.83612 * 22 9 7 41 41 H 1.08993 * 109.40261 * 71.22730 * 23 5 4 42 42 H 1.09002 * 109.40124 * 191.06161 * 23 5 4 43 43 H 0.96997 * 117.94316 * 177.77437 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0318 -0.7110 1.2576 5 6 1.7105 -2.2056 1.1376 6 1 0.6541 -2.3368 0.9033 7 6 2.0323 -2.8997 2.4359 8 8 2.8048 -2.3909 3.2203 9 7 1.4615 -4.0858 2.7255 10 6 1.8503 -4.8281 3.9327 11 6 2.2938 -6.2382 3.5239 12 7 1.2731 -6.8111 2.6338 13 6 0.6937 -8.0165 2.9277 14 1 0.5156 -8.2936 3.9563 15 6 0.3351 -8.8823 1.9036 16 7 0.8150 -8.7023 0.6914 17 14 -0.8289 -10.3027 2.2461 18 1 -1.2228 -10.2858 3.6778 19 1 -2.0397 -10.1660 1.3974 20 1 -0.1488 -11.5857 1.9354 21 6 0.8844 -6.0687 1.4265 22 6 0.4395 -4.6602 1.8393 23 6 2.5649 -2.7952 0.0126 24 6 2.4580 -1.9357 -1.2143 25 8 2.7959 -2.4096 -2.2782 26 7 2.0118 -0.6791 -1.1962 27 1 -0.3633 -1.0277 -0.0074 28 1 -0.3633 0.5074 0.8937 29 1 -0.3633 0.5203 -0.8862 30 1 1.5323 -0.2990 2.1345 31 1 3.1093 -0.5749 1.3499 32 1 2.6744 -4.3147 4.4283 33 1 0.9997 -4.8945 4.6112 34 1 3.2465 -6.1837 2.9971 35 1 2.3994 -6.8605 4.4125 36 1 0.5647 -9.3075 -0.0241 37 1 0.0604 -6.5821 0.9309 38 1 1.7338 -5.9997 0.7470 39 1 -0.5124 -4.7173 2.3673 40 1 0.3295 -4.0344 0.9536 41 1 3.6054 -2.8401 0.3337 42 1 2.2139 -3.8007 -0.2196 43 1 2.0073 -0.1863 -2.0317 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408202377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:36 Heat of formation + Delta-G solvation = -72.033016 kcal Electronic energy + Delta-G solvation = -25203.510200 eV Core-core repulsion = 21669.067353 eV Total energy + Delta-G solvation = -3534.442847 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.99802 -40.65619 -38.59133 -37.77451 -35.62656 -34.47020 -33.05014 -32.01421 -31.82064 -28.85357 -28.10726 -26.24935 -25.10803 -24.23106 -23.46856 -22.04664 -20.23706 -19.81500 -18.85918 -18.18031 -17.80526 -17.46390 -16.95977 -16.53465 -16.28565 -16.04666 -15.56340 -15.40712 -15.14218 -15.12293 -14.92398 -14.69910 -14.51726 -13.93630 -13.51499 -13.34027 -13.21946 -13.03971 -12.78025 -12.70981 -12.51928 -12.35254 -12.22020 -12.05739 -12.04537 -11.85752 -11.78815 -11.63856 -11.23302 -10.64573 -10.54360 -10.13926 -9.82120 -8.59564 -7.89969 -5.44830 1.45397 1.47713 1.49989 1.56953 1.59971 2.00330 2.25955 2.50259 3.24846 3.26464 3.55898 3.58544 3.61829 3.65714 3.95791 4.09593 4.22142 4.23118 4.28501 4.36508 4.40080 4.54535 4.58816 4.66245 4.69163 4.76125 4.82393 4.90628 4.96348 5.02726 5.09046 5.13965 5.20482 5.43050 5.50629 5.58769 5.65051 5.84751 6.26801 6.37881 6.46735 7.10839 7.12494 7.15550 7.76665 8.33503 9.14710 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.004379 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.375286 B = 6392.270167 C = 7055.684524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.139 3.861 3 H 0.123 0.877 4 C -0.108 4.108 5 C -0.103 4.103 6 H 0.120 0.880 7 C 0.518 3.482 8 O -0.577 6.577 9 N -0.599 5.599 10 C 0.106 3.894 11 C 0.131 3.869 12 N -0.606 5.606 13 C -0.270 4.270 14 H 0.067 0.933 15 C -0.038 4.038 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.265 1.265 19 H -0.287 1.287 20 H -0.295 1.295 21 C 0.167 3.833 22 C 0.095 3.905 23 C -0.122 4.122 24 C 0.530 3.470 25 O -0.602 6.602 26 N -0.701 5.701 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.006 0.994 35 H 0.072 0.928 36 H 0.252 0.748 37 H 0.063 0.937 38 H 0.000 1.000 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 19.870 0.781 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.035 3.965 3 H 0.141 0.859 4 C -0.146 4.146 5 C -0.124 4.124 6 H 0.138 0.862 7 C 0.307 3.693 8 O -0.457 6.457 9 N -0.330 5.330 10 C -0.018 4.018 11 C 0.005 3.995 12 N -0.330 5.330 13 C -0.400 4.400 14 H 0.084 0.916 15 C -0.235 4.235 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.214 1.214 20 H -0.222 1.222 21 C 0.041 3.959 22 C -0.029 4.029 23 C -0.163 4.163 24 C 0.317 3.683 25 O -0.484 6.484 26 N -0.352 5.352 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.024 0.976 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.018 0.982 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.422 19.670 0.763 19.833 hybrid contribution -0.242 -1.339 -0.452 1.434 sum -2.663 18.331 0.311 18.526 Atomic orbital electron populations 1.22363 0.93716 1.02719 1.04102 1.21233 0.95275 0.97368 0.82597 0.85923 1.21790 1.03048 0.91039 0.98724 1.21483 1.02784 0.97214 0.90937 0.86240 1.20826 0.79736 0.80483 0.88226 1.90636 1.37714 1.65870 1.51505 1.48122 1.40171 1.19691 1.25062 1.22014 1.00858 0.92284 0.86625 1.21402 0.90494 0.93130 0.94508 1.44177 1.43379 1.20142 1.25300 1.19476 1.33937 0.93995 0.92601 0.91580 1.25946 1.01495 0.99784 0.96284 1.70166 1.45394 1.39947 1.02086 0.85241 0.78442 0.78774 0.78139 1.18880 1.21361 1.22227 1.20899 0.97597 0.89405 0.88043 1.22494 0.90636 0.95648 0.94145 1.21525 1.02802 0.99811 0.92138 1.19953 0.75837 0.82759 0.89751 1.90762 1.51974 1.72834 1.32855 1.45540 1.63441 1.12528 1.13642 0.93045 0.89348 0.90951 0.87918 0.90798 0.89414 0.90938 0.97563 0.90947 0.93915 0.91900 0.98162 0.90648 0.88031 0.88407 0.88769 0.75558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.28 71.98 0.67 -0.92 16 2 C 0.14 1.56 3.84 45.11 0.17 1.73 16 3 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.11 -1.77 4.12 30.69 0.13 -1.64 16 5 C -0.10 -2.28 1.66 -11.40 -0.02 -2.30 16 6 H 0.12 2.25 4.67 -2.39 -0.01 2.24 16 7 C 0.52 15.45 6.82 87.66 0.60 16.05 16 8 O -0.58 -20.04 15.63 -3.03 -0.05 -20.09 16 9 N -0.60 -19.44 2.95 -818.02 -2.41 -21.85 16 10 C 0.11 3.63 6.57 86.42 0.57 4.20 16 11 C 0.13 5.37 6.68 86.40 0.58 5.95 16 12 N -0.61 -29.14 2.93 -698.01 -2.05 -31.18 16 13 C -0.27 -14.22 9.50 84.04 0.80 -13.42 16 14 H 0.07 3.40 7.88 -2.91 -0.02 3.38 16 15 C -0.04 -2.06 4.90 84.86 0.42 -1.65 16 16 N -0.93 -53.66 11.58 21.65 0.25 -53.41 16 17 Si 0.97 43.21 29.58 68.60 2.03 45.23 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 21 C 0.17 7.43 5.47 86.42 0.47 7.90 16 22 C 0.09 3.07 6.31 86.42 0.54 3.61 16 23 C -0.12 -3.22 5.25 29.71 0.16 -3.06 16 24 C 0.53 13.85 7.71 87.72 0.68 14.52 16 25 O -0.60 -21.51 17.78 -3.01 -0.05 -21.57 16 26 N -0.70 -11.84 5.03 -446.62 -2.25 -14.08 16 27 H 0.05 0.63 6.53 -2.39 -0.02 0.61 16 28 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 1.49 8.11 -2.39 -0.02 1.47 16 31 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 32 H 0.09 2.91 7.02 -2.38 -0.02 2.89 16 33 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.07 2.85 7.93 -2.39 -0.02 2.83 16 36 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 37 H 0.06 3.13 6.44 -2.39 -0.02 3.11 16 38 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.10 2.67 5.01 -2.39 -0.01 2.66 16 41 H 0.10 2.72 8.09 -2.39 -0.02 2.70 16 42 H 0.09 2.84 7.55 -2.39 -0.02 2.82 16 43 H 0.41 5.79 8.80 -92.71 -0.82 4.97 16 Total: -1.00 -71.54 336.37 1.44 -70.11 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.21 Total: 15.86 kcal Atomic # 6 Polarization: 25.22 SS G_CDS: 5.76 Total: 30.98 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -6.46 Total: -120.53 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.10 Total: -41.66 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.54 1.44 -70.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408202377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.927 kcal (2) G-P(sol) polarization free energy of solvation -71.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds