Wall clock time and date at job start Tue Mar 31 2020 04:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.62982 * 2 1 4 4 C 1.53245 * 109.63013 * 239.61258 * 2 1 3 5 5 N 1.46897 * 109.34148 * 186.45975 * 4 2 1 6 6 C 1.46901 * 111.26544 * 63.10549 * 5 4 2 7 7 C 1.53238 * 109.36274 * 296.88106 * 6 5 4 8 8 N 1.47079 * 109.63071 * 120.58468 * 2 1 3 9 9 C 1.34781 * 120.87647 * 350.87345 * 8 2 1 10 10 O 1.21351 * 120.00393 * 6.76471 * 9 8 2 11 11 C 1.49451 * 119.99836 * 186.76897 * 9 8 2 12 12 O 1.21351 * 119.99904 * 6.23449 * 11 9 8 13 13 N 1.34780 * 120.00011 * 186.23913 * 11 9 8 14 14 C 1.46502 * 119.99760 * 175.81324 * 13 11 9 15 15 C 1.53002 * 109.46695 * 185.05884 * 14 13 11 16 16 C 1.50698 * 115.54876 * 65.41111 * 15 14 13 17 17 H 1.08002 * 120.00021 * 268.13165 * 16 15 14 18 18 C 1.37881 * 120.00020 * 88.14043 * 16 15 14 19 19 N 1.31511 * 119.99983 * 2.98136 * 18 16 15 20 20 Si 1.86801 * 119.99953 * 182.98298 * 18 16 15 21 21 H 1.48498 * 109.46984 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46944 * 120.00022 * 20 18 16 23 23 H 1.48499 * 109.46930 * 239.99633 * 20 18 16 24 24 C 1.52997 * 117.49957 * 279.73977 * 15 14 13 25 25 C 1.53005 * 117.49544 * 211.08048 * 15 14 13 26 26 H 1.08999 * 109.46982 * 184.48300 * 1 2 3 27 27 H 1.08998 * 109.46905 * 304.48599 * 1 2 3 28 28 H 1.09003 * 109.46583 * 64.48819 * 1 2 3 29 29 H 1.09003 * 109.49258 * 66.49605 * 4 2 1 30 30 H 1.08999 * 109.49177 * 306.42304 * 4 2 1 31 31 H 1.00896 * 110.99834 * 298.96104 * 5 4 2 32 32 H 1.09000 * 109.49358 * 56.85677 * 6 5 4 33 33 H 1.09008 * 109.48887 * 176.90839 * 6 5 4 34 34 H 1.09004 * 109.62944 * 173.56017 * 7 6 5 35 35 H 1.08998 * 109.62873 * 294.13223 * 7 6 5 36 36 H 0.96992 * 119.99922 * 355.81240 * 13 11 9 37 37 H 1.08999 * 109.47355 * 305.05738 * 14 13 11 38 38 H 1.08996 * 109.47303 * 65.06141 * 14 13 11 39 39 H 0.97002 * 120.00053 * 185.00468 * 19 18 16 40 40 H 1.09004 * 117.49928 * 359.97438 * 24 15 14 41 41 H 1.08997 * 117.49997 * 145.02817 * 24 15 14 42 42 H 1.09002 * 117.49188 * 214.97826 * 25 15 14 43 43 H 1.08999 * 117.50105 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0449 -0.7301 -1.2451 5 7 3.5055 -0.8624 -1.1624 6 6 3.9016 -1.6871 -0.0130 7 6 3.4634 -0.9965 1.2828 8 7 2.0242 -0.7049 1.1926 9 6 1.1808 -1.0736 2.1771 10 8 -0.0164 -0.9362 2.0338 11 6 1.7200 -1.6517 3.4454 12 8 2.9180 -1.6848 3.6359 13 7 0.8757 -2.1362 4.3776 14 6 1.4057 -2.7855 5.5792 15 6 0.2490 -3.3525 6.4047 16 6 -0.5257 -4.4705 5.7559 17 1 -1.4014 -4.2482 5.1642 18 6 -0.1166 -5.7772 5.9179 19 7 0.9146 -6.0530 6.6861 20 14 -1.0271 -7.1559 5.0462 21 1 -2.1423 -6.5856 4.2486 22 1 -0.0909 -7.8753 4.1455 23 1 -1.5720 -8.1027 6.0521 24 6 -0.5264 -2.3799 7.2955 25 6 0.4235 -3.4027 7.9239 26 1 -0.3633 -1.0245 0.0803 27 1 -0.3633 0.5819 0.8471 28 1 -0.3632 0.4426 -0.9275 29 1 1.7811 -0.1602 -2.1360 30 1 1.5924 -1.7203 -1.2992 31 1 3.9492 0.0431 -1.1276 32 1 3.4233 -2.6640 -0.0843 33 1 4.9845 -1.8116 -0.0107 34 1 3.6518 -1.6553 2.1306 35 1 4.0182 -0.0667 1.4079 36 1 -0.0827 -2.0549 4.2530 37 1 2.0760 -3.5947 5.2893 38 1 1.9537 -2.0556 6.1750 39 1 1.2475 -6.9623 6.7431 40 1 -0.2122 -1.3361 7.2938 41 1 -1.5968 -2.5490 7.4128 42 1 -0.0225 -4.2441 8.4542 43 1 1.3621 -3.0313 8.3353 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418821960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:24 Heat of formation + Delta-G solvation = -12.728056 kcal Electronic energy + Delta-G solvation = -24729.220930 eV Core-core repulsion = 21197.349739 eV Total energy + Delta-G solvation = -3531.871191 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.96290 -38.88524 -37.68673 -36.82709 -34.08279 -33.22680 -32.75052 -31.99013 -28.30123 -26.95739 -25.59451 -25.32870 -23.72345 -22.44640 -21.39089 -21.02766 -19.80926 -19.15498 -17.52981 -16.70642 -16.19332 -16.05658 -15.59607 -15.41951 -14.99104 -14.81656 -14.69151 -14.41377 -14.05094 -13.70968 -13.23868 -13.17227 -12.79395 -12.64361 -12.61806 -12.10541 -11.84123 -11.66466 -11.60331 -11.49615 -11.17649 -11.02906 -10.96252 -10.55004 -10.34280 -10.26747 -9.64290 -9.51075 -9.16257 -8.79076 -8.55469 -8.45702 -8.24820 -8.11620 -6.12848 -4.21822 1.69833 2.48051 3.23301 3.32592 3.36281 3.49919 3.72814 4.02405 4.33272 4.59309 4.70016 4.84304 4.95401 4.98689 5.03552 5.15079 5.26397 5.29914 5.40828 5.64736 5.67620 5.83261 5.91157 5.93343 6.01054 6.16364 6.24159 6.34506 6.41937 6.48484 6.61277 6.68090 6.72115 6.99069 7.04976 7.06463 7.14259 7.29477 7.47749 7.72034 7.77659 8.08612 8.27722 8.44785 8.80785 9.46095 10.94894 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018016 B = 0.004206 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.771992 B = 6656.125580 C = 6998.579436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.102 3.898 3 H 0.072 0.928 4 C 0.047 3.953 5 N -0.687 5.687 6 C 0.041 3.959 7 C 0.032 3.968 8 N -0.586 5.586 9 C 0.511 3.489 10 O -0.513 6.513 11 C 0.495 3.505 12 O -0.533 6.533 13 N -0.662 5.662 14 C 0.159 3.841 15 C 0.018 3.982 16 C -0.498 4.498 17 H 0.061 0.939 18 C 0.074 3.926 19 N -0.876 5.876 20 Si 0.889 3.111 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.211 4.211 25 C -0.136 4.136 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.340 0.660 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.151 0.849 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 11.155 -11.740 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.002 4.002 3 H 0.090 0.910 4 C -0.083 4.083 5 N -0.315 5.315 6 C -0.089 4.089 7 C -0.091 4.091 8 N -0.322 5.322 9 C 0.294 3.706 10 O -0.389 6.389 11 C 0.276 3.724 12 O -0.414 6.414 13 N -0.311 5.311 14 C 0.037 3.963 15 C 0.018 3.982 16 C -0.535 4.535 17 H 0.080 0.920 18 C -0.130 4.130 19 N -0.512 5.512 20 Si 0.716 3.284 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.249 4.249 25 C -0.174 4.174 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.158 0.842 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.168 0.832 35 H 0.083 0.917 36 H 0.249 0.751 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.284 10.464 -11.989 16.480 hybrid contribution -0.878 -0.127 0.221 0.914 sum 3.406 10.337 -11.767 16.029 Atomic orbital electron populations 1.22165 0.91942 1.04312 1.01073 1.22164 0.97127 0.95306 0.85620 0.91023 1.22526 0.88114 1.01565 0.96113 1.60608 1.07548 1.20074 1.43272 1.22484 1.01480 0.97479 0.87449 1.23618 0.79077 1.03085 1.03326 1.47991 1.08877 1.56667 1.18618 1.20389 0.86352 0.79056 0.84772 1.90797 1.14916 1.53158 1.80024 1.20074 0.86899 0.80421 0.85046 1.90418 1.14815 1.58199 1.77961 1.45906 1.10939 1.54112 1.20112 1.21250 0.96852 0.94712 0.83534 1.19051 0.94390 0.95325 0.89473 1.20413 1.11875 0.89341 1.31886 0.92037 1.24975 0.95266 0.98537 0.94259 1.70003 1.24626 1.20188 1.36388 0.86591 0.80011 0.82218 0.79577 1.19618 1.20925 1.20944 1.23064 0.97746 0.94069 1.10001 1.22462 0.98138 0.99349 0.97455 0.90756 0.90776 0.93479 0.89479 0.90196 0.84239 0.90363 0.89228 0.83196 0.91684 0.75089 0.90510 0.93670 0.92898 0.91660 0.90180 0.89229 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 7.61 37.16 0.28 -1.34 16 2 C 0.10 1.12 3.63 -67.49 -0.24 0.88 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.05 0.45 5.99 -3.70 -0.02 0.43 16 5 N -0.69 -6.48 6.85 -113.50 -0.78 -7.26 16 6 C 0.04 0.43 6.70 -3.70 -0.02 0.40 16 7 C 0.03 0.39 6.12 -3.58 -0.02 0.37 16 8 N -0.59 -7.90 3.01 -165.38 -0.50 -8.40 16 9 C 0.51 8.37 7.67 -11.58 -0.09 8.29 16 10 O -0.51 -8.95 11.99 5.50 0.07 -8.89 16 11 C 0.50 9.04 7.76 -11.58 -0.09 8.95 16 12 O -0.53 -10.18 13.16 5.50 0.07 -10.11 16 13 N -0.66 -12.83 5.45 -60.73 -0.33 -13.16 16 14 C 0.16 3.42 5.51 -4.04 -0.02 3.39 16 15 C 0.02 0.42 1.49 -155.66 -0.23 0.19 16 16 C -0.50 -12.75 8.74 -34.44 -0.30 -13.05 16 17 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 18 C 0.07 1.93 5.42 -17.82 -0.10 1.83 16 19 N -0.88 -23.80 12.47 55.43 0.69 -23.11 16 20 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.21 -4.34 9.96 -26.69 -0.27 -4.61 16 25 C -0.14 -3.04 9.02 -26.69 -0.24 -3.28 16 26 H 0.07 1.04 6.83 -51.93 -0.35 0.68 16 27 H 0.07 1.00 6.73 -51.93 -0.35 0.65 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.34 2.67 8.83 -39.29 -0.35 2.32 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.15 2.21 4.36 -54.70 -0.24 1.97 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.41 7.91 7.94 -40.82 -0.32 7.59 16 37 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 38 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 39 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 42 H 0.09 2.17 8.06 -51.93 -0.42 1.75 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -27.65 345.95 -8.60 -36.25 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.65 Total: 11.43 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.37 Total: 2.45 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.92 Total: -51.92 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.14 Total: -18.99 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.65 -8.60 -36.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418821960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.520 kcal (2) G-P(sol) polarization free energy of solvation -27.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds