Wall clock time and date at job start Tue Mar 31 2020 04:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.62982 * 2 1 4 4 C 1.53245 * 109.63013 * 239.61258 * 2 1 3 5 5 N 1.46897 * 109.34148 * 186.45975 * 4 2 1 6 6 C 1.46901 * 111.26544 * 63.10549 * 5 4 2 7 7 C 1.53238 * 109.36274 * 296.88106 * 6 5 4 8 8 N 1.47079 * 109.63071 * 120.58468 * 2 1 3 9 9 C 1.34781 * 120.87647 * 350.87345 * 8 2 1 10 10 O 1.21351 * 120.00393 * 6.76471 * 9 8 2 11 11 C 1.49451 * 119.99836 * 186.76897 * 9 8 2 12 12 O 1.21351 * 119.99904 * 6.23449 * 11 9 8 13 13 N 1.34780 * 120.00011 * 186.23913 * 11 9 8 14 14 C 1.46502 * 119.99760 * 175.81324 * 13 11 9 15 15 C 1.53002 * 109.46695 * 185.05884 * 14 13 11 16 16 C 1.50698 * 115.54876 * 65.41111 * 15 14 13 17 17 H 1.08002 * 120.00021 * 268.13165 * 16 15 14 18 18 C 1.37881 * 120.00020 * 88.14043 * 16 15 14 19 19 N 1.31511 * 119.99983 * 2.98136 * 18 16 15 20 20 Si 1.86801 * 119.99953 * 182.98298 * 18 16 15 21 21 H 1.48498 * 109.46984 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46944 * 120.00022 * 20 18 16 23 23 H 1.48499 * 109.46930 * 239.99633 * 20 18 16 24 24 C 1.52997 * 117.49957 * 279.73977 * 15 14 13 25 25 C 1.53005 * 117.49544 * 211.08048 * 15 14 13 26 26 H 1.08999 * 109.46982 * 184.48300 * 1 2 3 27 27 H 1.08998 * 109.46905 * 304.48599 * 1 2 3 28 28 H 1.09003 * 109.46583 * 64.48819 * 1 2 3 29 29 H 1.09003 * 109.49258 * 66.49605 * 4 2 1 30 30 H 1.08999 * 109.49177 * 306.42304 * 4 2 1 31 31 H 1.00896 * 110.99834 * 298.96104 * 5 4 2 32 32 H 1.09000 * 109.49358 * 56.85677 * 6 5 4 33 33 H 1.09008 * 109.48887 * 176.90839 * 6 5 4 34 34 H 1.09004 * 109.62944 * 173.56017 * 7 6 5 35 35 H 1.08998 * 109.62873 * 294.13223 * 7 6 5 36 36 H 0.96992 * 119.99922 * 355.81240 * 13 11 9 37 37 H 1.08999 * 109.47355 * 305.05738 * 14 13 11 38 38 H 1.08996 * 109.47303 * 65.06141 * 14 13 11 39 39 H 0.97002 * 120.00053 * 185.00468 * 19 18 16 40 40 H 1.09004 * 117.49928 * 359.97438 * 24 15 14 41 41 H 1.08997 * 117.49997 * 145.02817 * 24 15 14 42 42 H 1.09002 * 117.49188 * 214.97826 * 25 15 14 43 43 H 1.08999 * 117.50105 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0449 -0.7301 -1.2451 5 7 3.5055 -0.8624 -1.1624 6 6 3.9016 -1.6871 -0.0130 7 6 3.4634 -0.9965 1.2828 8 7 2.0242 -0.7049 1.1926 9 6 1.1808 -1.0736 2.1771 10 8 -0.0164 -0.9362 2.0338 11 6 1.7200 -1.6517 3.4454 12 8 2.9180 -1.6848 3.6359 13 7 0.8757 -2.1362 4.3776 14 6 1.4057 -2.7855 5.5792 15 6 0.2490 -3.3525 6.4047 16 6 -0.5257 -4.4705 5.7559 17 1 -1.4014 -4.2482 5.1642 18 6 -0.1166 -5.7772 5.9179 19 7 0.9146 -6.0530 6.6861 20 14 -1.0271 -7.1559 5.0462 21 1 -2.1423 -6.5856 4.2486 22 1 -0.0909 -7.8753 4.1455 23 1 -1.5720 -8.1027 6.0521 24 6 -0.5264 -2.3799 7.2955 25 6 0.4235 -3.4027 7.9239 26 1 -0.3633 -1.0245 0.0803 27 1 -0.3633 0.5819 0.8471 28 1 -0.3632 0.4426 -0.9275 29 1 1.7811 -0.1602 -2.1360 30 1 1.5924 -1.7203 -1.2992 31 1 3.9492 0.0431 -1.1276 32 1 3.4233 -2.6640 -0.0843 33 1 4.9845 -1.8116 -0.0107 34 1 3.6518 -1.6553 2.1306 35 1 4.0182 -0.0667 1.4079 36 1 -0.0827 -2.0549 4.2530 37 1 2.0760 -3.5947 5.2893 38 1 1.9537 -2.0556 6.1750 39 1 1.2475 -6.9623 6.7431 40 1 -0.2122 -1.3361 7.2938 41 1 -1.5968 -2.5490 7.4128 42 1 -0.0225 -4.2441 8.4542 43 1 1.3621 -3.0313 8.3353 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418821960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:23 Heat of formation + Delta-G solvation = -32.569728 kcal Electronic energy + Delta-G solvation = -24730.081330 eV Core-core repulsion = 21197.349739 eV Total energy + Delta-G solvation = -3532.731590 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.18786 -40.22347 -38.82437 -38.54364 -35.42456 -34.42694 -33.96125 -33.74396 -29.39326 -28.47250 -27.40371 -26.40831 -24.97101 -23.41004 -22.95690 -22.28051 -21.43576 -20.65269 -18.86923 -18.05817 -17.80715 -17.29534 -16.82038 -16.69896 -16.39514 -16.30685 -15.77904 -15.70540 -15.50075 -15.10102 -14.57086 -14.48083 -14.27942 -13.77106 -13.68906 -13.59747 -13.43808 -13.01254 -12.89602 -12.87632 -12.51917 -12.38823 -12.34235 -12.06811 -12.02842 -11.53440 -11.41585 -11.02809 -10.60401 -10.44258 -10.16961 -10.11589 -9.84371 -9.08510 -8.13639 -6.26238 0.33622 1.26138 1.37286 1.41875 1.50814 2.12363 2.38976 2.44426 3.14441 3.24018 3.29940 3.55296 3.75186 3.94854 4.05016 4.08379 4.15654 4.18979 4.41569 4.49419 4.56068 4.60616 4.65259 4.79716 4.79811 4.89165 4.95951 4.98935 5.01181 5.07896 5.15768 5.27856 5.42468 5.52086 5.54565 5.68443 5.74460 5.88087 5.93140 6.30201 6.33900 6.42779 6.73438 6.80757 6.97986 7.43371 8.93756 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018016 B = 0.004206 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.771992 B = 6656.125580 C = 6998.579436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.100 3.900 3 H 0.095 0.905 4 C 0.054 3.946 5 N -0.684 5.684 6 C 0.049 3.951 7 C 0.032 3.968 8 N -0.580 5.580 9 C 0.509 3.491 10 O -0.529 6.529 11 C 0.492 3.508 12 O -0.543 6.543 13 N -0.667 5.667 14 C 0.176 3.824 15 C -0.005 4.005 16 C -0.505 4.505 17 H 0.055 0.945 18 C 0.030 3.970 19 N -0.903 5.903 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.281 1.281 24 C -0.183 4.183 25 C -0.142 4.142 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.062 0.938 31 H 0.354 0.646 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.414 0.586 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.260 0.740 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 12.790 -13.573 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.003 4.003 3 H 0.113 0.887 4 C -0.077 4.077 5 N -0.313 5.313 6 C -0.081 4.081 7 C -0.090 4.090 8 N -0.314 5.314 9 C 0.292 3.708 10 O -0.407 6.407 11 C 0.274 3.726 12 O -0.424 6.424 13 N -0.316 5.316 14 C 0.052 3.948 15 C -0.006 4.006 16 C -0.542 4.542 17 H 0.073 0.927 18 C -0.171 4.171 19 N -0.540 5.540 20 Si 0.769 3.231 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.207 1.207 24 C -0.220 4.220 25 C -0.180 4.180 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.133 0.867 30 H 0.081 0.919 31 H 0.173 0.827 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.250 0.750 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.588 12.125 -13.856 18.975 hybrid contribution -0.929 -0.581 0.739 1.322 sum 3.659 11.544 -13.117 17.852 Atomic orbital electron populations 1.22032 0.92566 1.02530 1.01753 1.22444 0.96658 0.96332 0.84887 0.88703 1.22520 0.88002 1.00884 0.96293 1.60593 1.07478 1.20877 1.42314 1.22408 1.02444 0.96553 0.86735 1.23606 0.78424 1.03579 1.03426 1.48139 1.09180 1.55570 1.18482 1.20045 0.86439 0.79616 0.84728 1.90807 1.15403 1.54204 1.80263 1.20533 0.86651 0.79866 0.85551 1.90443 1.15228 1.58345 1.78386 1.45814 1.11076 1.54641 1.20050 1.20845 0.95757 0.93951 0.84200 1.19094 0.95484 0.96141 0.89847 1.20658 1.11721 0.90343 1.31504 0.92705 1.25595 0.96012 1.00499 0.95035 1.70094 1.25892 1.20409 1.37620 0.85752 0.78942 0.79868 0.78582 1.19334 1.21040 1.20720 1.23045 0.97383 0.94737 1.06838 1.22372 0.99231 0.99533 0.96882 0.93337 0.92724 0.90493 0.86655 0.91934 0.82673 0.92168 0.87256 0.85798 0.89815 0.75021 0.93825 0.92720 0.93073 0.89087 0.90068 0.91653 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 7.61 71.98 0.55 -2.34 16 2 C 0.10 1.95 3.63 44.96 0.16 2.11 16 3 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.05 0.87 5.99 86.39 0.52 1.39 16 5 N -0.68 -10.78 6.85 -513.01 -3.52 -14.30 16 6 C 0.05 0.92 6.70 86.38 0.58 1.50 16 7 C 0.03 0.74 6.12 86.34 0.53 1.27 16 8 N -0.58 -14.88 3.01 -795.51 -2.39 -17.27 16 9 C 0.51 16.59 7.67 87.27 0.67 17.26 16 10 O -0.53 -18.51 11.99 -3.25 -0.04 -18.55 16 11 C 0.49 18.12 7.76 87.27 0.68 18.79 16 12 O -0.54 -20.90 13.16 -3.25 -0.04 -20.94 16 13 N -0.67 -26.12 5.45 -464.40 -2.53 -28.65 16 14 C 0.18 7.65 5.51 86.38 0.48 8.13 16 15 C 0.00 -0.23 1.49 -52.93 -0.08 -0.31 16 16 C -0.50 -26.17 8.74 25.60 0.22 -25.95 16 17 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 18 C 0.03 1.57 5.42 84.66 0.46 2.03 16 19 N -0.90 -50.05 12.47 21.45 0.27 -49.78 16 20 Si 0.94 42.80 29.54 68.60 2.03 44.83 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 C -0.18 -7.30 9.96 30.62 0.30 -6.99 16 25 C -0.14 -6.35 9.02 30.62 0.28 -6.07 16 26 H 0.05 1.32 6.83 -2.39 -0.02 1.31 16 27 H 0.05 1.42 6.73 -2.39 -0.02 1.41 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.35 4.16 8.83 -89.70 -0.79 3.37 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.12 3.61 4.36 -46.31 -0.20 3.41 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.41 16.01 7.94 -92.71 -0.74 15.27 16 37 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.05 2.24 8.09 -2.39 -0.02 2.22 16 39 H 0.26 13.88 8.32 -92.71 -0.77 13.10 16 40 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 41 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.06 3.22 8.06 -2.39 -0.02 3.20 16 43 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -60.07 345.95 -1.58 -61.64 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -0.69 Total: 32.21 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 5.34 Total: 10.81 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -8.18 Total: -110.01 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.08 Total: -39.49 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -60.07 -1.58 -61.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418821960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.072 kcal (2) G-P(sol) polarization free energy of solvation -60.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds