Wall clock time and date at job start Tue Mar 31 2020 04:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.65262 * 2 1 4 4 N 1.47312 * 110.60142 * 237.08846 * 2 1 3 5 5 C 1.34530 * 106.61461 * 241.24721 * 4 2 1 6 6 O 1.21535 * 123.76989 * 180.20946 * 5 4 2 7 7 N 1.33791 * 112.45924 * 0.38448 * 5 4 2 8 8 C 1.46493 * 124.17505 * 179.86274 * 7 5 4 9 9 C 1.53003 * 109.47356 * 269.69448 * 8 7 5 10 10 N 1.46897 * 109.47509 * 175.32133 * 9 8 7 11 11 C 1.46899 * 111.00003 * 74.87614 * 10 9 8 12 12 C 1.50698 * 109.47147 * 190.00027 * 11 10 9 13 13 H 1.07994 * 120.00361 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99865 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99852 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99896 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46940 * 270.00028 * 16 14 12 18 18 H 1.48498 * 109.46903 * 29.99883 * 16 14 12 19 19 H 1.48497 * 109.46905 * 149.99838 * 16 14 12 20 20 C 1.46901 * 111.00173 * 198.83283 * 10 9 8 21 21 C 1.53004 * 109.47007 * 72.12958 * 20 10 9 22 22 C 1.53002 * 117.49623 * 243.87522 * 21 20 10 23 23 C 1.52998 * 117.49845 * 175.21828 * 21 20 10 24 24 C 1.34769 * 111.64249 * 359.59584 * 7 5 4 25 25 O 1.21241 * 127.15424 * 180.26691 * 24 7 5 26 26 H 1.09003 * 109.47317 * 297.08383 * 1 2 3 27 27 H 1.08996 * 109.47134 * 57.09190 * 1 2 3 28 28 H 1.09004 * 109.46792 * 177.08932 * 1 2 3 29 29 H 0.96997 * 126.68741 * 61.43820 * 4 2 1 30 30 H 1.09000 * 109.47170 * 149.70421 * 8 7 5 31 31 H 1.08999 * 109.47433 * 29.69723 * 8 7 5 32 32 H 1.09002 * 109.46541 * 55.32349 * 9 8 7 33 33 H 1.08997 * 109.47285 * 295.33000 * 9 8 7 34 34 H 1.09010 * 109.46488 * 70.00254 * 11 10 9 35 35 H 1.08993 * 109.47486 * 310.00679 * 11 10 9 36 36 H 0.97003 * 119.99993 * 0.02562 * 15 14 12 37 37 H 1.08994 * 109.46954 * 192.12617 * 20 10 9 38 38 H 1.08999 * 109.46952 * 312.12982 * 20 10 9 39 39 H 1.09001 * 115.54905 * 29.54312 * 21 20 10 40 40 H 1.09005 * 117.50039 * 0.02562 * 22 21 20 41 41 H 1.09000 * 117.50005 * 145.01947 * 22 21 20 42 42 H 1.09004 * 117.49925 * 214.97597 * 23 21 20 43 43 H 1.08999 * 117.50094 * 359.97046 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 7 2.0483 -0.7492 -1.1576 5 6 2.7641 -1.7751 -0.6626 6 8 3.3372 -2.5945 -1.3535 7 7 2.7716 -1.7947 0.6751 8 6 3.4688 -2.8012 1.4795 9 6 2.5254 -3.9725 1.7605 10 7 3.2564 -5.0307 2.4702 11 6 3.4817 -4.6638 3.8747 12 6 4.4361 -5.6460 4.5036 13 1 4.8357 -6.4609 3.9184 14 6 4.7992 -5.5041 5.8262 15 7 4.3129 -4.5114 6.5387 16 14 5.9828 -6.7212 6.6055 17 1 5.2167 -7.8486 7.1947 18 1 6.9111 -7.2413 5.5698 19 1 6.7613 -6.0410 7.6715 20 6 2.5527 -6.3162 2.3682 21 6 2.6864 -6.8591 0.9440 22 6 1.4051 -7.0053 0.1206 23 6 2.1139 -8.2496 0.6615 24 6 2.0633 -0.7709 1.1912 25 8 1.8894 -0.5186 2.3642 26 1 -0.3634 0.4679 0.9150 27 1 -0.3633 0.5583 -0.8627 28 1 -0.3633 -1.0264 -0.0522 29 1 1.9041 -0.5415 -2.0940 30 1 3.7864 -2.3563 2.4225 31 1 4.3420 -3.1605 0.9349 32 1 2.1425 -4.3647 0.8182 33 1 1.6938 -3.6297 2.3760 34 1 2.5334 -4.6838 4.4120 35 1 3.9066 -3.6614 3.9248 36 1 3.6986 -3.8792 6.1338 37 1 2.9897 -7.0262 3.0702 38 1 1.4984 -6.1730 2.6050 39 1 3.5948 -6.5717 0.4147 40 1 0.4670 -6.7143 0.5934 41 1 1.4707 -6.8145 -0.9505 42 1 2.6456 -8.8768 -0.0541 43 1 1.6426 -8.7777 1.4903 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459372884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:15 Heat of formation + Delta-G solvation = -16.347199 kcal Electronic energy + Delta-G solvation = -24534.422213 eV Core-core repulsion = 21002.394084 eV Total energy + Delta-G solvation = -3532.028129 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.45390 -38.61188 -38.04093 -36.40493 -36.01236 -34.78338 -32.68353 -30.80334 -29.51784 -27.11593 -25.53652 -24.55834 -23.12240 -22.32130 -22.08145 -21.15031 -20.17138 -19.76078 -18.08534 -17.18258 -16.85194 -16.58016 -15.71829 -15.61494 -15.16988 -14.77486 -14.63434 -14.25978 -14.15730 -13.72576 -13.63767 -13.39714 -13.15892 -12.86227 -12.38104 -12.29634 -12.18972 -11.82327 -11.44675 -11.27481 -10.95471 -10.88988 -10.80312 -10.72681 -10.44540 -10.19528 -10.07952 -9.91801 -9.74240 -9.60053 -9.45586 -8.64396 -8.35977 -7.42384 -6.34746 -4.04173 1.55399 2.15482 2.95126 2.98193 3.45843 3.50258 3.66105 3.78386 4.10979 4.38931 4.52717 4.54306 4.69141 5.02998 5.11921 5.14759 5.24128 5.25032 5.35951 5.40777 5.44184 5.49982 5.62792 5.69173 5.80736 5.82224 5.85649 6.06226 6.15083 6.23375 6.28265 6.32512 6.46759 6.58679 6.76455 6.99156 7.02918 7.07637 7.32919 7.76134 7.95002 8.05350 8.30095 8.60053 8.88229 9.66615 11.04252 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.004719 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.652938 B = 5931.676784 C = 7344.582937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.091 3.909 3 H 0.126 0.874 4 N -0.730 5.730 5 C 0.701 3.299 6 O -0.537 6.537 7 N -0.572 5.572 8 C 0.123 3.877 9 C 0.044 3.956 10 N -0.523 5.523 11 C 0.180 3.820 12 C -0.589 4.589 13 H 0.059 0.941 14 C 0.015 3.985 15 N -0.914 5.914 16 Si 1.074 2.926 17 H -0.289 1.289 18 H -0.287 1.287 19 H -0.285 1.285 20 C 0.095 3.905 21 C -0.134 4.134 22 C -0.191 4.191 23 C -0.181 4.181 24 C 0.519 3.481 25 O -0.459 6.459 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.437 0.563 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.027 0.973 34 H -0.019 1.019 35 H 0.023 0.977 36 H 0.267 0.733 37 H 0.094 0.906 38 H 0.020 0.980 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.434 7.369 -16.181 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 H 0.144 0.856 4 N -0.395 5.395 5 C 0.401 3.599 6 O -0.410 6.410 7 N -0.318 5.318 8 C 0.003 3.997 9 C -0.085 4.085 10 N -0.247 5.247 11 C 0.055 3.945 12 C -0.628 4.628 13 H 0.078 0.922 14 C -0.189 4.189 15 N -0.550 5.550 16 Si 0.902 3.098 17 H -0.216 1.216 18 H -0.213 1.213 19 H -0.211 1.211 20 C -0.033 4.033 21 C -0.153 4.153 22 C -0.228 4.228 23 C -0.218 4.218 24 C 0.305 3.695 25 O -0.328 6.328 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.282 0.718 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.045 0.955 34 H -0.001 1.001 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.038 0.962 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.911 6.561 -14.603 17.437 hybrid contribution -1.735 0.677 -1.507 2.396 sum -8.646 7.238 -16.110 19.664 Atomic orbital electron populations 1.21964 0.90816 1.03940 1.04252 1.22073 0.97573 0.97992 0.84192 0.85612 1.45594 1.55269 1.29663 1.09018 1.15914 0.79878 0.82146 0.81916 1.91026 1.47990 1.41145 1.60861 1.46473 1.49209 1.28371 1.07759 1.21786 0.95527 0.86996 0.95422 1.22270 0.94563 0.92675 0.99030 1.61851 1.45566 1.00490 1.16790 1.19916 0.95284 0.97202 0.82095 1.21984 1.29174 1.13681 0.97925 0.92232 1.25835 0.99230 0.99550 0.94272 1.70761 1.30514 1.14308 1.39421 0.83474 0.75796 0.74948 0.75585 1.21581 1.21316 1.21072 1.21569 0.95292 0.92372 0.94029 1.22445 0.97101 0.98282 0.97466 1.23022 0.96897 1.03312 0.99608 1.22900 1.04580 0.91093 1.03265 1.20899 0.77710 0.80884 0.90040 1.90854 1.56250 1.69074 1.16618 0.89701 0.90390 0.91362 0.71847 0.88461 0.87717 0.91091 0.95483 1.00147 0.95913 0.92233 0.88733 0.96173 0.87194 0.89563 0.89432 0.89170 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.63 37.16 0.36 -0.59 16 2 C 0.09 0.73 4.32 -68.21 -0.29 0.44 16 3 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 4 N -0.73 -6.31 6.24 -59.19 -0.37 -6.68 16 5 C 0.70 9.55 8.62 -88.02 -0.76 8.79 16 6 O -0.54 -9.19 17.48 5.34 0.09 -9.10 16 7 N -0.57 -8.37 2.60 -120.73 -0.31 -8.68 16 8 C 0.12 2.15 5.73 -4.04 -0.02 2.13 16 9 C 0.04 0.83 5.15 -3.82 -0.02 0.81 16 10 N -0.52 -11.28 4.39 -236.07 -1.04 -12.32 16 11 C 0.18 4.64 3.86 -4.98 -0.02 4.63 16 12 C -0.59 -16.56 8.28 -34.44 -0.29 -16.84 16 13 H 0.06 1.68 7.26 -52.49 -0.38 1.30 16 14 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 15 N -0.91 -27.96 13.65 55.43 0.76 -27.20 16 16 Si 1.07 25.45 29.90 -169.99 -5.08 20.36 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.10 1.89 5.08 -3.82 -0.02 1.87 16 21 C -0.13 -2.25 4.98 -90.62 -0.45 -2.70 16 22 C -0.19 -2.72 10.01 -26.69 -0.27 -2.99 16 23 C -0.18 -2.55 10.25 -26.70 -0.27 -2.83 16 24 C 0.52 6.91 7.65 -10.56 -0.08 6.83 16 25 O -0.46 -7.68 17.76 5.59 0.10 -7.58 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.44 2.51 8.96 -40.82 -0.37 2.14 16 30 H 0.10 1.84 6.76 -51.93 -0.35 1.49 16 31 H 0.10 1.88 7.85 -51.93 -0.41 1.47 16 32 H 0.07 1.27 7.00 -51.93 -0.36 0.91 16 33 H 0.03 0.53 8.01 -51.93 -0.42 0.12 16 34 H -0.02 -0.53 7.99 -51.92 -0.41 -0.94 16 35 H 0.02 0.62 6.52 -51.93 -0.34 0.28 16 36 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 37 H 0.09 2.07 6.59 -51.93 -0.34 1.73 16 38 H 0.02 0.39 7.78 -51.93 -0.40 -0.01 16 39 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 40 H 0.09 1.20 8.03 -51.93 -0.42 0.79 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -33.87 357.49 -9.37 -43.24 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.67 Total: 2.69 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.23 Total: -0.12 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.96 Total: -54.89 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.19 Total: -16.68 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.87 -9.37 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459372884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.897 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds