Wall clock time and date at job start Tue Mar 31 2020 04:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.65262 * 2 1 4 4 N 1.47312 * 110.60142 * 237.08846 * 2 1 3 5 5 C 1.34530 * 106.61461 * 241.24721 * 4 2 1 6 6 O 1.21535 * 123.76989 * 180.20946 * 5 4 2 7 7 N 1.33791 * 112.45924 * 0.38448 * 5 4 2 8 8 C 1.46493 * 124.17505 * 179.86274 * 7 5 4 9 9 C 1.53003 * 109.47356 * 269.69448 * 8 7 5 10 10 N 1.46897 * 109.47509 * 175.32133 * 9 8 7 11 11 C 1.46899 * 111.00003 * 74.87614 * 10 9 8 12 12 C 1.50698 * 109.47147 * 190.00027 * 11 10 9 13 13 H 1.07994 * 120.00361 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99865 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99852 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99896 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46940 * 270.00028 * 16 14 12 18 18 H 1.48498 * 109.46903 * 29.99883 * 16 14 12 19 19 H 1.48497 * 109.46905 * 149.99838 * 16 14 12 20 20 C 1.46901 * 111.00173 * 198.83283 * 10 9 8 21 21 C 1.53004 * 109.47007 * 72.12958 * 20 10 9 22 22 C 1.53002 * 117.49623 * 243.87522 * 21 20 10 23 23 C 1.52998 * 117.49845 * 175.21828 * 21 20 10 24 24 C 1.34769 * 111.64249 * 359.59584 * 7 5 4 25 25 O 1.21241 * 127.15424 * 180.26691 * 24 7 5 26 26 H 1.09003 * 109.47317 * 297.08383 * 1 2 3 27 27 H 1.08996 * 109.47134 * 57.09190 * 1 2 3 28 28 H 1.09004 * 109.46792 * 177.08932 * 1 2 3 29 29 H 0.96997 * 126.68741 * 61.43820 * 4 2 1 30 30 H 1.09000 * 109.47170 * 149.70421 * 8 7 5 31 31 H 1.08999 * 109.47433 * 29.69723 * 8 7 5 32 32 H 1.09002 * 109.46541 * 55.32349 * 9 8 7 33 33 H 1.08997 * 109.47285 * 295.33000 * 9 8 7 34 34 H 1.09010 * 109.46488 * 70.00254 * 11 10 9 35 35 H 1.08993 * 109.47486 * 310.00679 * 11 10 9 36 36 H 0.97003 * 119.99993 * 0.02562 * 15 14 12 37 37 H 1.08994 * 109.46954 * 192.12617 * 20 10 9 38 38 H 1.08999 * 109.46952 * 312.12982 * 20 10 9 39 39 H 1.09001 * 115.54905 * 29.54312 * 21 20 10 40 40 H 1.09005 * 117.50039 * 0.02562 * 22 21 20 41 41 H 1.09000 * 117.50005 * 145.01947 * 22 21 20 42 42 H 1.09004 * 117.49925 * 214.97597 * 23 21 20 43 43 H 1.08999 * 117.50094 * 359.97046 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 7 2.0483 -0.7492 -1.1576 5 6 2.7641 -1.7751 -0.6626 6 8 3.3372 -2.5945 -1.3535 7 7 2.7716 -1.7947 0.6751 8 6 3.4688 -2.8012 1.4795 9 6 2.5254 -3.9725 1.7605 10 7 3.2564 -5.0307 2.4702 11 6 3.4817 -4.6638 3.8747 12 6 4.4361 -5.6460 4.5036 13 1 4.8357 -6.4609 3.9184 14 6 4.7992 -5.5041 5.8262 15 7 4.3129 -4.5114 6.5387 16 14 5.9828 -6.7212 6.6055 17 1 5.2167 -7.8486 7.1947 18 1 6.9111 -7.2413 5.5698 19 1 6.7613 -6.0410 7.6715 20 6 2.5527 -6.3162 2.3682 21 6 2.6864 -6.8591 0.9440 22 6 1.4051 -7.0053 0.1206 23 6 2.1139 -8.2496 0.6615 24 6 2.0633 -0.7709 1.1912 25 8 1.8894 -0.5186 2.3642 26 1 -0.3634 0.4679 0.9150 27 1 -0.3633 0.5583 -0.8627 28 1 -0.3633 -1.0264 -0.0522 29 1 1.9041 -0.5415 -2.0940 30 1 3.7864 -2.3563 2.4225 31 1 4.3420 -3.1605 0.9349 32 1 2.1425 -4.3647 0.8182 33 1 1.6938 -3.6297 2.3760 34 1 2.5334 -4.6838 4.4120 35 1 3.9066 -3.6614 3.9248 36 1 3.6986 -3.8792 6.1338 37 1 2.9897 -7.0262 3.0702 38 1 1.4984 -6.1730 2.6050 39 1 3.5948 -6.5717 0.4147 40 1 0.4670 -6.7143 0.5934 41 1 1.4707 -6.8145 -0.9505 42 1 2.6456 -8.8768 -0.0541 43 1 1.6426 -8.7777 1.4903 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459372884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:14 Heat of formation + Delta-G solvation = -41.072704 kcal Electronic energy + Delta-G solvation = -24535.494391 eV Core-core repulsion = 21002.394084 eV Total energy + Delta-G solvation = -3533.100307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.51938 -39.77847 -39.59769 -37.50577 -37.36826 -36.15884 -34.75322 -31.59011 -30.93412 -29.07020 -26.97865 -25.72802 -24.91623 -23.38237 -23.22719 -22.71974 -21.38048 -21.26132 -19.17799 -18.96588 -18.19846 -17.74822 -17.03052 -16.61099 -16.51233 -16.36659 -15.97021 -15.60375 -15.54899 -15.32178 -15.11219 -14.69063 -14.35416 -14.10608 -13.91977 -13.48175 -13.37928 -13.30961 -12.95499 -12.93535 -12.58623 -12.39406 -12.32423 -12.07390 -11.99256 -11.91451 -11.31233 -11.23031 -11.01968 -10.89300 -10.72856 -10.57238 -10.51115 -9.27921 -8.68780 -6.39325 0.49571 1.05839 1.53181 1.62564 1.80984 1.85132 2.13187 2.55215 2.81201 2.88244 3.07539 3.16339 3.56562 3.77682 3.82305 3.94854 3.97199 4.02287 4.07943 4.20892 4.23240 4.32615 4.40376 4.56330 4.67272 4.69489 4.72577 4.73288 4.79858 4.82754 4.91015 4.97771 5.04649 5.16427 5.22821 5.32350 5.73710 5.77934 5.94260 5.99463 6.27057 6.29019 6.38206 6.57635 7.05185 7.41120 8.69805 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.004719 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.652938 B = 5931.676784 C = 7344.582937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.107 3.893 3 H 0.168 0.832 4 N -0.699 5.699 5 C 0.698 3.302 6 O -0.576 6.576 7 N -0.579 5.579 8 C 0.133 3.867 9 C 0.057 3.943 10 N -0.527 5.527 11 C 0.195 3.805 12 C -0.596 4.596 13 H 0.058 0.942 14 C -0.036 4.036 15 N -0.937 5.937 16 Si 1.123 2.877 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.283 1.283 20 C 0.100 3.900 21 C -0.158 4.158 22 C -0.174 4.174 23 C -0.164 4.164 24 C 0.508 3.492 25 O -0.502 6.502 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.054 0.946 29 H 0.456 0.544 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.014 0.986 34 H -0.047 1.047 35 H 0.004 0.996 36 H 0.252 0.748 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.220 7.390 -18.533 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.000 4.000 3 H 0.185 0.815 4 N -0.366 5.366 5 C 0.399 3.601 6 O -0.452 6.452 7 N -0.325 5.325 8 C 0.011 3.989 9 C -0.072 4.072 10 N -0.251 5.251 11 C 0.068 3.932 12 C -0.634 4.634 13 H 0.076 0.924 14 C -0.233 4.233 15 N -0.575 5.575 16 Si 0.944 3.056 17 H -0.198 1.198 18 H -0.194 1.194 19 H -0.209 1.209 20 C -0.028 4.028 21 C -0.176 4.176 22 C -0.211 4.211 23 C -0.201 4.201 24 C 0.297 3.703 25 O -0.373 6.373 26 H 0.103 0.897 27 H 0.134 0.866 28 H 0.073 0.927 29 H 0.304 0.696 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.032 0.968 34 H -0.030 1.030 35 H 0.022 0.978 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.037 0.963 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.749 6.626 -17.029 19.848 hybrid contribution -1.555 0.720 -0.827 1.902 sum -9.304 7.346 -17.856 21.433 Atomic orbital electron populations 1.22015 0.88648 1.03832 1.06030 1.22279 0.98815 0.98314 0.80621 0.81529 1.45462 1.53253 1.27692 1.10155 1.15999 0.80186 0.82823 0.81123 1.91002 1.49868 1.42928 1.61354 1.46504 1.49353 1.28245 1.08419 1.21376 0.95415 0.87242 0.94864 1.22188 0.94078 0.92300 0.98673 1.61820 1.47038 1.02110 1.14141 1.19587 0.93362 0.95885 0.84326 1.22262 1.29121 1.13748 0.98264 0.92424 1.27410 1.00258 1.00371 0.95270 1.70899 1.31533 1.15318 1.39745 0.82860 0.74213 0.73244 0.75292 1.19753 1.19391 1.20887 1.21509 0.94523 0.90842 0.95952 1.22182 0.98426 1.01360 0.95677 1.23083 0.95397 1.02603 1.00050 1.23019 1.03382 0.90229 1.03460 1.21908 0.76756 0.80586 0.91006 1.90832 1.57642 1.70018 1.18852 0.89674 0.86600 0.92689 0.69594 0.90817 0.88373 0.89718 0.96799 1.02975 0.97801 0.93900 0.91333 0.96299 0.88247 0.89219 0.87789 0.87094 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.63 71.98 0.69 -0.65 16 2 C 0.11 1.41 4.32 44.37 0.19 1.60 16 3 H 0.17 1.07 8.14 -2.39 -0.02 1.05 16 4 N -0.70 -10.06 6.24 -459.61 -2.87 -12.93 16 5 C 0.70 18.33 8.62 179.44 1.55 19.87 16 6 O -0.58 -19.39 17.48 -3.83 -0.07 -19.46 16 7 N -0.58 -17.17 2.60 -773.13 -2.01 -19.18 16 8 C 0.13 4.92 5.73 86.38 0.49 5.42 16 9 C 0.06 2.23 5.15 86.30 0.44 2.68 16 10 N -0.53 -23.87 4.39 -900.80 -3.95 -27.82 16 11 C 0.19 10.66 3.86 85.56 0.33 10.99 16 12 C -0.60 -34.68 8.28 25.60 0.21 -34.47 16 13 H 0.06 3.32 7.26 -2.91 -0.02 3.30 16 14 C -0.04 -2.10 5.46 84.66 0.46 -1.64 16 15 N -0.94 -59.34 13.65 21.45 0.29 -59.05 16 16 Si 1.12 51.40 29.90 68.60 2.05 53.45 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 C 0.10 4.07 5.08 86.30 0.44 4.51 16 21 C -0.16 -5.20 4.98 -10.79 -0.05 -5.26 16 22 C -0.17 -4.60 10.01 30.62 0.31 -4.29 16 23 C -0.16 -4.27 10.25 30.62 0.31 -3.95 16 24 C 0.51 13.43 7.65 87.94 0.67 14.10 16 25 O -0.50 -17.37 17.76 -2.91 -0.05 -17.42 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.46 3.48 8.96 -92.71 -0.83 2.65 16 30 H 0.07 3.04 6.76 -2.39 -0.02 3.03 16 31 H 0.10 3.72 7.85 -2.39 -0.02 3.70 16 32 H 0.08 3.08 7.00 -2.39 -0.02 3.06 16 33 H 0.01 0.57 8.01 -2.39 -0.02 0.56 16 34 H -0.05 -2.81 7.99 -2.38 -0.02 -2.82 16 35 H 0.00 0.23 6.52 -2.39 -0.02 0.22 16 36 H 0.25 16.33 7.22 -92.71 -0.67 15.66 16 37 H 0.07 3.12 6.59 -2.39 -0.02 3.10 16 38 H 0.02 0.76 7.78 -2.39 -0.02 0.74 16 39 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 40 H 0.09 2.32 8.03 -2.38 -0.02 2.30 16 41 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 43 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -78.00 357.49 -0.27 -78.27 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.28 Total: 15.23 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 6.05 Total: 8.91 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -8.54 Total: -118.98 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.12 Total: -36.88 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -78.00 -0.27 -78.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459372884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.194 kcal (2) G-P(sol) polarization free energy of solvation -77.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds