Wall clock time and date at job start Tue Mar 31 2020 04:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47314 * 2 1 4 4 C 1.52998 * 109.47481 * 119.99811 * 2 1 3 5 5 C 1.50696 * 109.47145 * 295.00064 * 4 2 1 6 6 H 1.07995 * 120.00203 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00197 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99904 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00184 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46783 * 60.00370 * 9 7 5 11 11 H 1.48498 * 109.47145 * 299.99915 * 9 7 5 12 12 H 1.48501 * 109.47172 * 180.02562 * 9 7 5 13 13 C 1.53005 * 109.47297 * 240.00048 * 2 1 3 14 14 N 1.46897 * 109.47313 * 175.13367 * 13 2 1 15 15 C 1.46219 * 111.00040 * 292.18411 * 14 13 2 16 16 C 1.53272 * 110.61516 * 204.74217 * 15 14 13 17 17 N 1.46921 * 107.40473 * 63.43725 * 16 15 14 18 18 C 1.34156 * 121.38627 * 146.14381 * 17 16 15 19 19 O 1.21351 * 120.49248 * 355.70559 * 18 17 16 20 20 C 1.49823 * 119.01438 * 175.72706 * 18 17 16 21 21 O 1.21348 * 120.61102 * 168.19345 * 20 18 17 22 22 N 1.34818 * 118.77545 * 348.16641 * 20 18 17 23 23 C 1.46693 * 121.00337 * 354.06114 * 22 20 18 24 24 C 1.46945 * 117.59165 * 326.80749 * 17 16 15 25 25 H 1.08998 * 109.74300 * 93.66519 * 24 17 16 26 26 C 1.46100 * 110.99861 * 164.14586 * 14 13 2 27 27 H 1.08998 * 109.47212 * 185.43128 * 1 2 3 28 28 H 1.08999 * 109.47250 * 305.43338 * 1 2 3 29 29 H 1.08999 * 109.47548 * 65.43179 * 1 2 3 30 30 H 1.08999 * 109.47346 * 174.99840 * 4 2 1 31 31 H 1.08998 * 109.46838 * 55.00103 * 4 2 1 32 32 H 0.96999 * 120.00099 * 0.02562 * 8 7 5 33 33 H 1.09002 * 109.46993 * 295.13548 * 13 2 1 34 34 H 1.09002 * 109.47029 * 55.13109 * 13 2 1 35 35 H 1.09006 * 109.24986 * 325.03454 * 15 14 13 36 36 H 1.09005 * 109.24573 * 84.44740 * 15 14 13 37 37 H 1.09000 * 109.86767 * 303.96435 * 16 15 14 38 38 H 1.09000 * 109.93371 * 182.94807 * 16 15 14 39 39 H 0.97008 * 119.81633 * 173.21949 * 22 20 18 40 40 H 1.08998 * 108.49183 * 276.78203 * 23 22 20 41 41 H 1.09001 * 110.19009 * 157.31274 * 23 22 20 42 42 H 1.09009 * 109.13135 * 213.77176 * 26 14 13 43 43 H 1.08997 * 109.13488 * 332.88407 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0807 0.9746 2.3757 7 6 1.9924 -0.4021 3.7283 8 7 2.6748 -1.5196 3.8512 9 14 1.4989 0.5631 5.2496 10 1 0.0190 0.6706 5.3090 11 1 2.0920 1.9230 5.1870 12 1 1.9939 -0.1370 6.4621 13 6 2.0400 -0.7213 -1.2493 14 7 3.5042 -0.6203 -1.3095 15 6 3.9249 0.7588 -1.5527 16 6 5.3099 0.7928 -2.2084 17 7 5.1918 0.1396 -3.5191 18 6 5.9198 0.5457 -4.5702 19 8 6.6406 1.5179 -4.4814 20 6 5.8292 -0.2187 -5.8556 21 8 6.2994 0.2345 -6.8785 22 7 5.2163 -1.4195 -5.8549 23 6 4.7602 -2.0342 -4.6035 24 6 4.2345 -0.9683 -3.6436 25 1 3.2776 -0.5895 -4.0025 26 6 4.0574 -1.5886 -2.2534 27 1 -0.3633 -1.0230 0.0973 28 1 -0.3634 0.5958 0.8373 29 1 -0.3634 0.4273 -0.9346 30 1 3.1263 -0.7994 1.2055 31 1 1.6054 -1.7197 1.2951 32 1 2.9314 -2.0206 3.0612 33 1 1.7496 -1.7710 -1.2068 34 1 1.6072 -0.2602 -2.1371 35 1 3.2038 1.2437 -2.2108 36 1 3.9628 1.2954 -0.6046 37 1 6.0264 0.2535 -1.5889 38 1 5.6349 1.8253 -2.3369 39 1 5.0614 -1.8825 -6.6931 40 1 5.6043 -2.5472 -4.1426 41 1 3.9693 -2.7565 -4.8056 42 1 5.0262 -1.9300 -1.8885 43 1 3.3832 -2.4419 -2.3262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589820871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:39 Heat of formation + Delta-G solvation = -88.111723 kcal Electronic energy + Delta-G solvation = -24655.147140 eV Core-core repulsion = 21120.007068 eV Total energy + Delta-G solvation = -3535.140072 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.47077 -40.40532 -39.30691 -38.01804 -36.45452 -35.03964 -33.85620 -32.53227 -30.19655 -28.51291 -27.38527 -26.51160 -25.26768 -24.40342 -24.36034 -21.56342 -20.72834 -19.61591 -19.24329 -18.83051 -18.65291 -17.77813 -17.37577 -16.65936 -16.29256 -16.06327 -15.65700 -15.56627 -15.39287 -15.33471 -14.96400 -14.64480 -13.96766 -13.89678 -13.53269 -13.52210 -13.23884 -13.11355 -12.92897 -12.87761 -12.80378 -12.59692 -12.55629 -12.25578 -11.95164 -11.70386 -11.50150 -11.12922 -10.92413 -10.54604 -10.44251 -10.39496 -10.01690 -9.07464 -8.52903 -6.20783 0.14617 1.29318 1.55032 1.62490 1.78716 1.80946 1.99496 2.63086 2.82879 2.97747 3.29762 3.51557 3.59971 3.71767 3.90309 4.03528 4.08883 4.31297 4.34327 4.35818 4.49457 4.52531 4.64015 4.69118 4.75953 4.81677 4.86324 4.89741 4.98956 5.06653 5.20837 5.38908 5.42446 5.49271 5.63655 5.64931 5.79346 5.90376 6.15666 6.20361 6.26699 6.37378 6.39117 6.78982 6.84047 7.58228 8.88140 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.003342 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.753264 B = 8375.285095 C = 8658.509310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 H 0.046 0.954 4 C 0.033 3.967 5 C -0.605 4.605 6 H 0.043 0.957 7 C -0.040 4.040 8 N -0.944 5.944 9 Si 1.107 2.893 10 H -0.272 1.272 11 H -0.274 1.274 12 H -0.287 1.287 13 C 0.076 3.924 14 N -0.558 5.558 15 C 0.064 3.936 16 C 0.112 3.888 17 N -0.584 5.584 18 C 0.504 3.496 19 O -0.543 6.543 20 C 0.520 3.480 21 O -0.539 6.539 22 N -0.690 5.690 23 C 0.102 3.898 24 C 0.088 3.912 25 H 0.096 0.904 26 C 0.060 3.940 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.002 0.998 31 H -0.021 1.021 32 H 0.257 0.743 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.424 0.576 40 H 0.094 0.906 41 H 0.160 0.840 42 H 0.084 0.916 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 -4.507 -18.200 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.094 4.094 3 H 0.064 0.936 4 C -0.004 4.004 5 C -0.644 4.644 6 H 0.061 0.939 7 C -0.237 4.237 8 N -0.582 5.582 9 Si 0.930 3.070 10 H -0.197 1.197 11 H -0.200 1.200 12 H -0.213 1.213 13 C -0.051 4.051 14 N -0.281 5.281 15 C -0.064 4.064 16 C -0.010 4.010 17 N -0.321 5.321 18 C 0.286 3.714 19 O -0.419 6.419 20 C 0.300 3.700 21 O -0.414 6.414 22 N -0.348 5.348 23 C -0.022 4.022 24 C -0.016 4.016 25 H 0.114 0.886 26 C -0.069 4.069 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.021 0.979 31 H -0.003 1.003 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.264 0.736 40 H 0.113 0.887 41 H 0.177 0.823 42 H 0.103 0.897 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.520 -3.750 -16.429 16.860 hybrid contribution -0.246 0.259 -2.274 2.302 sum 0.274 -3.491 -18.703 19.028 Atomic orbital electron populations 1.21609 0.95149 1.01047 1.00649 1.20991 0.95333 0.98421 0.94677 0.93579 1.18996 0.95059 0.93568 0.92761 1.22555 1.37532 1.10145 0.94128 0.93893 1.27113 0.94476 0.97394 1.04754 1.70897 1.38200 1.16160 1.32978 0.83048 0.76762 0.74599 0.72565 1.19730 1.19977 1.21307 1.22259 0.85492 1.01144 0.96205 1.60650 1.10823 1.05714 1.50902 1.22108 0.94485 0.89920 0.99885 1.21859 0.97911 0.99334 0.81895 1.48492 1.39690 1.34126 1.09772 1.20453 0.81169 0.84793 0.84958 1.90765 1.40719 1.27258 1.83138 1.20195 0.78731 0.82840 0.88265 1.90806 1.46753 1.69810 1.34060 1.45998 1.57139 1.18820 1.12796 1.22249 1.03560 0.94434 0.81941 1.22621 0.92530 0.87052 0.99439 0.88568 1.22438 1.02995 0.95391 0.86039 0.93614 0.94412 0.91647 0.97932 1.00261 0.93350 0.90099 0.93284 0.93517 0.90727 0.89751 0.89397 0.73565 0.88735 0.82253 0.89731 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 8.91 71.98 0.64 -3.50 16 2 C -0.08 -2.66 2.31 -10.80 -0.02 -2.69 16 3 H 0.05 1.73 6.99 -2.39 -0.02 1.71 16 4 C 0.03 1.58 3.70 29.85 0.11 1.69 16 5 C -0.61 -33.17 8.47 25.60 0.22 -32.95 16 6 H 0.04 2.32 7.06 -2.91 -0.02 2.30 16 7 C -0.04 -2.29 5.46 84.65 0.46 -1.83 16 8 N -0.94 -57.61 13.65 21.45 0.29 -57.32 16 9 Si 1.11 50.11 29.90 68.60 2.05 52.16 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 13 C 0.08 1.90 4.28 86.31 0.37 2.27 16 14 N -0.56 -13.39 4.09 -899.08 -3.68 -17.07 16 15 C 0.06 1.55 4.86 86.52 0.42 1.97 16 16 C 0.11 2.56 6.13 86.39 0.53 3.09 16 17 N -0.58 -11.90 3.11 -797.14 -2.48 -14.38 16 18 C 0.50 13.39 7.65 87.48 0.67 14.06 16 19 O -0.54 -19.34 16.69 11.33 0.19 -19.16 16 20 C 0.52 12.03 7.94 87.38 0.69 12.73 16 21 O -0.54 -17.11 17.85 11.34 0.20 -16.91 16 22 N -0.69 -7.64 5.61 -463.89 -2.60 -10.24 16 23 C 0.10 0.53 6.55 86.27 0.56 1.10 16 24 C 0.09 1.06 3.06 44.92 0.14 1.20 16 25 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 26 C 0.06 0.88 4.88 86.54 0.42 1.30 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.40 7.12 -2.39 -0.02 1.38 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.00 0.12 7.48 -2.39 -0.02 0.10 16 31 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 32 H 0.26 15.76 7.22 -92.71 -0.67 15.09 16 33 H 0.08 1.90 7.59 -2.39 -0.02 1.88 16 34 H 0.05 1.00 7.84 -2.39 -0.02 0.98 16 35 H 0.05 1.08 7.65 -2.38 -0.02 1.07 16 36 H 0.07 2.18 7.66 -2.38 -0.02 2.17 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 2.21 7.43 -2.39 -0.02 2.19 16 39 H 0.42 2.74 8.93 -92.70 -0.83 1.91 16 40 H 0.09 0.42 8.08 -2.39 -0.02 0.40 16 41 H 0.16 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.12 1.14 7.38 -2.39 -0.02 1.13 16 Total: -1.00 -79.94 341.72 -0.52 -80.46 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 0.29 Total: 4.01 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.21 Total: -1.55 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -8.46 Total: -99.01 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: 0.39 Total: -36.07 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Total: -79.94 -0.52 -80.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589820871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.655 kcal (2) G-P(sol) polarization free energy of solvation -79.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds