Wall clock time and date at job start Tue Mar 31 2020 04:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.47221 * 2 1 4 4 C 1.50696 * 109.47173 * 240.00264 * 2 1 3 5 5 O 1.21277 * 120.00080 * 239.99470 * 4 2 1 6 6 N 1.34779 * 120.00404 * 59.99882 * 4 2 1 7 7 C 1.46503 * 119.99671 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00230 * 179.97438 * 6 4 2 9 9 C 1.52997 * 109.47294 * 269.99918 * 8 6 4 10 10 C 1.47206 * 109.47168 * 179.97438 * 9 8 6 11 11 N 7.01374 * 114.26461 * 255.71866 * 2 1 3 12 12 N 1.46892 * 109.47346 * 119.99905 * 2 1 3 13 13 C 1.48534 * 111.00548 * 177.60481 * 12 2 1 14 14 C 1.54930 * 103.22975 * 159.71957 * 13 12 2 15 15 C 1.54596 * 102.92634 * 322.58727 * 14 13 12 16 16 O 1.42896 * 110.39572 * 263.00067 * 15 14 13 17 17 C 1.50697 * 110.30963 * 140.86838 * 15 14 13 18 18 H 1.08000 * 120.00505 * 244.28977 * 17 15 14 19 19 C 1.37878 * 119.99825 * 64.28837 * 17 15 14 20 20 N 1.31510 * 120.00114 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99979 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47131 * 90.00236 * 21 19 17 23 23 H 1.48497 * 109.47138 * 210.00084 * 21 19 17 24 24 H 1.48498 * 109.47510 * 330.00260 * 21 19 17 25 25 C 1.47908 * 111.00167 * 295.00326 * 12 2 1 26 26 H 1.08999 * 109.47128 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47364 * 299.99878 * 1 2 3 28 28 H 1.09000 * 109.46827 * 60.00102 * 1 2 3 29 29 H 1.08997 * 109.47315 * 269.99886 * 7 6 4 30 30 H 1.09003 * 109.47246 * 30.00194 * 7 6 4 31 31 H 1.08997 * 109.47278 * 150.00017 * 7 6 4 32 32 H 1.09001 * 109.47054 * 149.99650 * 8 6 4 33 33 H 1.09004 * 109.47074 * 30.00164 * 8 6 4 34 34 H 1.09001 * 109.46832 * 60.00150 * 9 8 6 35 35 H 1.08996 * 109.46952 * 300.00131 * 9 8 6 36 36 H 1.09001 * 110.66959 * 278.16114 * 13 12 2 37 37 H 1.09009 * 110.66082 * 41.28375 * 13 12 2 38 38 H 1.09003 * 110.72610 * 204.22818 * 14 13 12 39 39 H 1.09002 * 110.72156 * 80.94614 * 14 13 12 40 40 H 0.96705 * 113.99544 * 295.76611 * 16 15 14 41 41 H 0.97001 * 120.00017 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.91635 * 333.51084 * 25 12 2 43 43 H 1.08998 * 109.91334 * 94.60335 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6963 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 0.8640 0.9409 -2.5890 8 6 2.1956 -0.9401 -3.6507 9 6 3.5432 -0.3471 -4.0669 10 6 4.0346 -1.0411 -5.2685 11 7 4.4123 -1.5773 -6.1965 12 7 2.0197 -0.6924 1.1994 13 6 3.5034 -0.7627 1.2051 14 6 3.8407 -1.0121 2.6965 15 6 2.7915 -0.1515 3.4371 16 8 3.3515 1.1113 3.8026 17 6 2.2912 -0.8748 4.6608 18 1 1.2553 -1.1735 4.7259 19 6 3.1559 -1.1554 5.6974 20 7 4.4172 -0.7914 5.6184 21 14 2.5357 -2.0514 7.2146 22 1 2.6871 -3.5159 7.0211 23 1 3.3239 -1.6244 8.3984 24 1 1.1029 -1.7262 7.4304 25 6 1.6462 0.0442 2.4264 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.1838 0.6426 -2.6226 30 1 1.0271 1.5997 -1.7360 31 1 1.1217 1.4666 -3.5084 32 1 1.4776 -0.8150 -4.4613 33 1 2.3171 -2.0014 -3.4337 34 1 4.2610 -0.4723 -3.2563 35 1 3.4216 0.7141 -4.2839 36 1 3.8517 -1.5909 0.5881 37 1 3.9343 0.1792 0.8655 38 1 4.8504 -0.6713 2.9259 39 1 3.7219 -2.0661 2.9478 40 1 4.0781 1.0503 4.4378 41 1 5.0254 -0.9885 6.3479 42 1 1.5265 1.1039 2.2013 43 1 0.7169 -0.3564 2.8315 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:02 Heat of formation + Delta-G solvation = -61.328423 kcal Electronic energy + Delta-G solvation = -24612.338103 eV Core-core repulsion = 21078.359442 eV Total energy + Delta-G solvation = -3533.978661 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45649 -39.70011 -37.97019 -36.78258 -36.58144 -34.09276 -33.92561 -32.12205 -29.88406 -29.29973 -27.75539 -26.75187 -25.83539 -23.51699 -22.22361 -21.01184 -20.10933 -19.09654 -18.68363 -18.10143 -17.45762 -16.89621 -16.61647 -16.21343 -16.03624 -15.73484 -15.57291 -15.00750 -14.64638 -14.47270 -14.33545 -13.97272 -13.86774 -13.62139 -13.56572 -13.39753 -13.24160 -13.20673 -12.98635 -12.79324 -12.76265 -12.47953 -12.37806 -12.27929 -12.19563 -11.89972 -11.85587 -11.81385 -11.07070 -10.62497 -10.49314 -10.03294 -9.66002 -9.25304 -8.18759 -6.31783 1.42312 1.44043 1.53544 1.55298 1.72001 1.78350 2.01558 2.41584 2.99964 3.10547 3.18870 3.58087 3.93476 4.04863 4.08057 4.14864 4.19336 4.33177 4.42153 4.45193 4.51698 4.52426 4.63846 4.76377 4.80575 4.84504 4.94473 4.97630 5.03952 5.11759 5.13251 5.32962 5.38029 5.44647 5.60666 5.62619 5.79832 6.01214 6.13484 6.19247 6.43796 6.56051 6.72753 7.26060 7.37886 7.47290 8.87297 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026634 B = 0.003485 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.027883 B = 8031.899425 C = 8483.247033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 H 0.078 0.922 4 C 0.520 3.480 5 O -0.558 6.558 6 N -0.609 5.609 7 C 0.060 3.940 8 C 0.122 3.878 9 C -0.036 4.036 10 C 0.241 3.759 11 N -0.496 5.496 12 N -0.506 5.506 13 C 0.050 3.950 14 C -0.112 4.112 15 C 0.227 3.773 16 O -0.599 6.599 17 C -0.551 4.551 18 H 0.056 0.944 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.960 3.040 22 H -0.279 1.279 23 H -0.281 1.281 24 H -0.269 1.269 25 C 0.070 3.930 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.149 0.851 36 H 0.084 0.916 37 H 0.032 0.968 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.377 0.623 41 H 0.268 0.732 42 H 0.046 0.954 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 7.321 -17.169 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 H 0.095 0.905 4 C 0.308 3.692 5 O -0.436 6.436 6 N -0.342 5.342 7 C -0.081 4.081 8 C -0.002 4.002 9 C -0.077 4.077 10 C -0.076 4.076 11 N -0.174 5.174 12 N -0.231 5.231 13 C -0.077 4.077 14 C -0.151 4.151 15 C 0.187 3.813 16 O -0.409 6.409 17 C -0.589 4.589 18 H 0.074 0.926 19 C -0.175 4.175 20 N -0.557 5.557 21 Si 0.785 3.215 22 H -0.205 1.205 23 H -0.206 1.206 24 H -0.194 1.194 25 C -0.058 4.058 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.167 0.833 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.228 0.772 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.917 5.714 -18.839 21.219 hybrid contribution 0.924 0.001 1.954 2.161 sum -6.993 5.715 -16.885 19.149 Atomic orbital electron populations 1.22049 0.90175 1.03230 1.04738 1.21952 0.99060 0.96237 0.88813 0.90451 1.20671 0.79349 0.83984 0.85199 1.90673 1.38775 1.27553 1.86566 1.47770 1.51719 1.30619 1.04082 1.22398 0.94871 0.85674 1.05135 1.21339 0.94279 0.97036 0.87586 1.19812 0.98247 1.01256 0.88358 1.29399 0.92093 0.92301 0.93804 1.81297 1.10698 1.11296 1.14114 1.64670 1.10337 1.47303 1.00806 1.23187 0.87936 0.99670 0.96949 1.22785 0.98935 0.99591 0.93832 1.19592 0.89152 0.80883 0.91656 1.86050 1.55388 1.32964 1.66460 1.21977 0.96368 1.37489 1.03112 0.92590 1.25715 0.94954 0.95715 1.01125 1.69703 1.04224 1.47991 1.33765 0.85535 0.78523 0.78541 0.78855 1.20539 1.20597 1.19401 1.22651 0.98107 0.95606 0.89397 0.92777 0.91604 0.87147 0.90275 0.90248 0.87502 0.86171 0.91485 0.87854 0.83343 0.89785 0.95012 0.93596 0.94218 0.77208 0.92260 0.93622 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.81 71.98 0.63 -2.29 16 2 C 0.05 1.36 1.39 44.17 0.06 1.42 16 3 H 0.08 1.86 7.22 -2.38 -0.02 1.85 16 4 C 0.52 13.10 6.80 87.66 0.60 13.70 16 5 O -0.56 -19.24 13.47 -3.02 -0.04 -19.28 16 6 N -0.61 -8.58 2.87 -846.77 -2.43 -11.02 16 7 C 0.06 0.33 8.80 127.77 1.12 1.45 16 8 C 0.12 1.41 5.36 86.38 0.46 1.88 16 9 C -0.04 -0.35 6.03 28.79 0.17 -0.18 16 10 C 0.24 4.07 15.44 89.44 1.38 5.45 16 11 N -0.50 -12.02 18.54 20.01 0.37 -11.64 16 12 N -0.51 -19.17 4.93 -862.23 -4.25 -23.42 16 13 C 0.05 2.07 5.49 86.65 0.48 2.54 16 14 C -0.11 -5.54 5.49 31.80 0.17 -5.37 16 15 C 0.23 11.42 0.99 -10.66 -0.01 11.41 16 16 O -0.60 -31.28 12.93 -148.98 -1.93 -33.21 16 17 C -0.55 -30.13 8.10 25.60 0.21 -29.92 16 18 H 0.06 3.04 7.35 -2.91 -0.02 3.02 16 19 C 0.02 1.32 5.26 84.66 0.45 1.77 16 20 N -0.92 -50.12 10.88 21.45 0.23 -49.89 16 21 Si 0.96 43.09 29.54 68.60 2.03 45.11 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 C 0.07 2.93 5.01 86.45 0.43 3.36 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.41 7.35 -2.39 -0.02 1.39 16 28 H 0.11 1.25 4.53 -2.39 -0.01 1.24 16 29 H 0.08 0.25 6.95 -2.39 -0.02 0.24 16 30 H 0.08 0.48 6.01 -2.39 -0.01 0.47 16 31 H 0.11 -0.08 8.07 -2.39 -0.02 -0.10 16 32 H 0.12 0.62 8.07 -2.39 -0.02 0.60 16 33 H 0.07 1.20 7.42 -2.38 -0.02 1.18 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.08 3.58 6.19 -2.39 -0.01 3.57 16 37 H 0.03 1.25 8.02 -2.38 -0.02 1.23 16 38 H 0.05 2.35 8.06 -2.39 -0.02 2.33 16 39 H 0.04 2.12 7.86 -2.39 -0.02 2.10 16 40 H 0.38 20.42 7.05 -74.05 -0.52 19.90 16 41 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.05 1.78 7.47 -2.39 -0.02 1.77 16 43 H 0.08 3.20 7.40 -2.39 -0.02 3.18 16 Total: -1.00 -73.06 345.20 0.65 -72.41 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.51 Total: 25.72 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 6.16 Total: 5.21 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -6.08 Total: -95.97 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -1.97 Total: -52.49 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -73.06 0.65 -72.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.084 kcal (2) G-P(sol) polarization free energy of solvation -73.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds