Wall clock time and date at job start Tue Mar 31 2020 04:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47484 * 2 1 4 4 C 1.50698 * 109.46876 * 239.99453 * 2 1 3 5 5 O 1.21276 * 120.00337 * 332.52317 * 4 2 1 6 6 N 1.34778 * 119.99823 * 152.79787 * 4 2 1 7 7 C 1.46968 * 120.59437 * 4.73477 * 6 4 2 8 8 C 1.53807 * 108.40061 * 124.75529 * 7 6 4 9 9 N 1.46965 * 108.57904 * 49.63958 * 8 7 6 10 10 C 1.36934 * 120.59755 * 124.62325 * 9 8 7 11 11 H 1.07997 * 120.00308 * 209.97242 * 10 9 8 12 12 C 1.38814 * 119.99730 * 29.97689 * 10 9 8 13 13 N 1.31621 * 119.99980 * 12.31032 * 12 10 9 14 14 Si 1.86800 * 120.00000 * 192.31177 * 12 10 9 15 15 H 1.48499 * 109.46740 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47247 * 119.99834 * 14 12 10 17 17 H 1.48504 * 109.46964 * 239.99923 * 14 12 10 18 18 C 1.46969 * 118.81048 * 304.64423 * 9 8 7 19 19 C 1.46965 * 120.59633 * 185.01206 * 6 4 2 20 20 C 1.53004 * 109.46781 * 120.00032 * 2 1 3 21 21 H 1.09001 * 110.21118 * 179.29949 * 20 2 1 22 22 C 1.54479 * 110.24572 * 301.22473 * 20 2 1 23 23 C 1.54627 * 101.76806 * 93.58492 * 22 20 2 24 24 C 1.51285 * 104.19385 * 24.79867 * 23 22 20 25 25 O 1.21282 * 124.94464 * 163.74473 * 24 23 22 26 26 N 1.34622 * 110.14702 * 343.76726 * 24 23 22 27 27 H 1.09001 * 109.46765 * 306.17423 * 1 2 3 28 28 H 1.09002 * 109.47126 * 66.16659 * 1 2 3 29 29 H 1.08994 * 109.47534 * 186.17228 * 1 2 3 30 30 H 1.09001 * 109.60501 * 244.54248 * 7 6 4 31 31 H 1.09001 * 109.60657 * 5.04634 * 7 6 4 32 32 H 1.08996 * 109.74256 * 289.84813 * 8 7 6 33 33 H 1.09005 * 109.67514 * 169.38930 * 8 7 6 34 34 H 0.96999 * 119.99799 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.61099 * 295.48494 * 18 9 8 36 36 H 1.08992 * 109.75114 * 175.05316 * 18 9 8 37 37 H 1.09001 * 109.60833 * 354.94670 * 19 6 4 38 38 H 1.08999 * 109.60932 * 115.28776 * 19 6 4 39 39 H 1.08998 * 110.97263 * 211.70627 * 22 20 2 40 40 H 1.09010 * 110.96991 * 335.43029 * 22 20 2 41 41 H 1.08997 * 110.49208 * 143.47340 * 23 22 20 42 42 H 1.08996 * 110.48763 * 266.12318 * 23 22 20 43 43 H 0.96998 * 124.46892 * 179.53510 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 1.3559 -1.5714 -1.7521 6 7 3.2357 -0.3931 -1.7478 7 6 4.1132 0.5683 -1.0655 8 6 5.4744 -0.1049 -0.8217 9 7 5.9301 -0.7095 -2.0814 10 6 7.1523 -0.3863 -2.6076 11 1 7.3030 -0.4085 -3.6767 12 6 8.1978 -0.0303 -1.7666 13 7 8.0976 -0.2331 -0.4699 14 14 9.7468 0.7365 -2.4751 15 1 9.6101 0.8563 -3.9490 16 1 9.9465 2.0844 -1.8848 17 1 10.9153 -0.1222 -2.1549 18 6 5.0502 -1.6668 -2.7666 19 6 3.6913 -0.9977 -3.0074 20 6 2.0400 -0.7213 1.2493 21 1 3.1298 -0.7392 1.2553 22 6 1.5097 -0.0252 2.5223 23 6 0.2290 -0.8399 2.8171 24 6 0.4856 -2.1822 2.1681 25 8 -0.1394 -3.1958 2.3980 26 7 1.5091 -2.0886 1.2986 27 1 -0.3633 0.6066 0.8296 28 1 -0.3633 0.4153 -0.9400 29 1 -0.3634 -1.0216 0.1105 30 1 4.2453 1.4509 -1.6914 31 1 3.6696 0.8559 -0.1123 32 1 5.3716 -0.8786 -0.0608 33 1 6.1982 0.6399 -0.4905 34 1 8.8283 0.0154 0.1176 35 1 4.9171 -2.5516 -2.1441 36 1 5.4909 -1.9540 -3.7212 37 1 2.9691 -1.7447 -3.3370 38 1 3.7913 -0.2245 -3.7692 39 1 2.2243 -0.1120 3.3408 40 1 1.2710 1.0200 2.3248 41 1 0.0897 -0.9563 3.8919 42 1 -0.6405 -0.3594 2.3686 43 1 1.8521 -2.8281 0.7728 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599538471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:07 Heat of formation + Delta-G solvation = -42.024421 kcal Electronic energy + Delta-G solvation = -25350.234546 eV Core-core repulsion = 21817.092969 eV Total energy + Delta-G solvation = -3533.141577 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05839 -39.39983 -37.11640 -36.57652 -33.95829 -32.62692 -31.48567 -31.13219 -30.17464 -27.69162 -27.09413 -24.51203 -23.45612 -22.69320 -21.39947 -20.68920 -20.10309 -18.51675 -17.64019 -17.19489 -16.48142 -16.24596 -15.47822 -15.14469 -14.80657 -14.68221 -14.12230 -13.95298 -13.69667 -13.57362 -13.36621 -13.25493 -13.12430 -12.86793 -12.46329 -12.23366 -12.07488 -11.73808 -11.50994 -11.38739 -11.22678 -11.00091 -10.92684 -10.80858 -10.55959 -10.30058 -10.12248 -9.92504 -9.88737 -9.37344 -9.11630 -8.68182 -8.32123 -6.77357 -5.93599 -3.41664 2.57885 2.85322 3.27459 3.29806 3.36065 3.37075 3.39029 4.18010 4.27786 4.36775 4.54963 4.69103 4.84106 4.90405 5.09357 5.12998 5.25276 5.30367 5.39950 5.52918 5.54339 5.66187 5.71748 5.74392 5.79974 5.83917 5.90845 6.03297 6.13354 6.14863 6.25098 6.35602 6.70563 6.77838 6.85095 7.04795 7.11581 7.39414 7.64241 7.83382 8.24990 8.29232 8.47965 9.04793 9.65550 10.22665 11.13791 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.004213 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.873633 B = 6644.551498 C = 7105.760969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 H 0.105 0.895 4 C 0.512 3.488 5 O -0.552 6.552 6 N -0.596 5.596 7 C 0.075 3.925 8 C 0.158 3.842 9 N -0.591 5.591 10 C -0.254 4.254 11 H 0.068 0.932 12 C 0.004 3.996 13 N -0.906 5.906 14 Si 0.906 3.094 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.289 1.289 18 C 0.132 3.868 19 C 0.095 3.905 20 C 0.138 3.862 21 H 0.100 0.900 22 C -0.125 4.125 23 C -0.160 4.160 24 C 0.521 3.479 25 O -0.541 6.541 26 N -0.716 5.716 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.022 0.978 33 H 0.105 0.895 34 H 0.255 0.745 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 5.584 4.859 13.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 H 0.123 0.877 4 C 0.299 3.701 5 O -0.430 6.430 6 N -0.328 5.328 7 C -0.049 4.049 8 C 0.031 3.969 9 N -0.314 5.314 10 C -0.384 4.384 11 H 0.085 0.915 12 C -0.194 4.194 13 N -0.550 5.550 14 Si 0.736 3.264 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.216 1.216 18 C 0.005 3.995 19 C -0.029 4.029 20 C 0.031 3.969 21 H 0.118 0.882 22 C -0.163 4.163 23 C -0.200 4.200 24 C 0.308 3.692 25 O -0.418 6.418 26 N -0.371 5.371 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.040 0.960 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -12.349 4.713 4.875 14.088 hybrid contribution 1.231 0.224 -0.651 1.411 sum -11.118 4.937 4.223 12.877 Atomic orbital electron populations 1.21770 0.92618 1.02979 1.01990 1.21802 0.98425 1.00810 0.93590 0.87705 1.20430 0.81054 0.83276 0.85354 1.90653 1.57133 1.32669 1.62569 1.48127 1.16415 1.43759 1.24513 1.22877 0.93817 0.92156 0.96016 1.21305 0.90560 0.97163 0.87877 1.43958 1.16340 1.46464 1.24599 1.19267 0.86668 1.41121 0.91319 0.91471 1.25129 0.97522 1.01033 0.95717 1.69947 1.32445 1.50078 1.02538 0.86164 0.82993 0.78695 0.78566 1.20197 1.21452 1.21589 1.21288 0.89293 0.91717 0.97201 1.22201 0.97946 0.97969 0.84823 1.21624 0.99651 0.81899 0.93723 0.88178 1.22654 0.96825 1.00083 0.96709 1.22496 1.00004 0.94522 1.03007 1.20899 0.79034 0.90196 0.79093 1.90743 1.51244 1.34864 1.64999 1.46286 1.35384 1.11612 1.43786 0.91719 0.92214 0.91574 0.91774 0.90960 0.95997 0.87745 0.93466 0.95920 0.91584 0.90087 0.92003 0.89242 0.88708 0.88178 0.87480 0.74709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 7.11 37.16 0.26 -1.19 16 2 C -0.12 -1.40 1.65 -91.77 -0.15 -1.55 16 3 H 0.10 0.97 6.57 -51.93 -0.34 0.63 16 4 C 0.51 7.99 6.47 -10.99 -0.07 7.92 16 5 O -0.55 -10.36 15.67 5.56 0.09 -10.28 16 6 N -0.60 -9.79 2.94 -172.21 -0.51 -10.30 16 7 C 0.08 1.20 6.26 -3.37 -0.02 1.18 16 8 C 0.16 3.28 5.50 -3.37 -0.02 3.26 16 9 N -0.59 -13.65 2.97 -171.77 -0.51 -14.16 16 10 C -0.25 -6.50 9.59 -15.06 -0.14 -6.64 16 11 H 0.07 1.70 7.86 -52.49 -0.41 1.29 16 12 C 0.00 0.12 5.03 -17.43 -0.09 0.03 16 13 N -0.91 -24.34 11.00 55.49 0.61 -23.73 16 14 Si 0.91 20.42 29.57 -169.99 -5.03 15.39 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.13 2.65 6.67 -3.59 -0.02 2.63 16 19 C 0.09 1.66 6.60 -3.59 -0.02 1.63 16 20 C 0.14 1.46 3.23 -67.01 -0.22 1.24 16 21 H 0.10 1.13 7.46 -51.93 -0.39 0.75 16 22 C -0.12 -0.92 6.22 -25.10 -0.16 -1.08 16 23 C -0.16 -1.41 6.05 -26.74 -0.16 -1.57 16 24 C 0.52 7.06 7.16 -10.77 -0.08 6.98 16 25 O -0.54 -9.66 18.03 5.56 0.10 -9.56 16 26 N -0.72 -9.30 5.09 -52.71 -0.27 -9.57 16 27 H 0.06 0.50 5.83 -51.93 -0.30 0.19 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.87 6.38 -51.93 -0.33 0.53 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.89 4.96 -51.93 -0.26 0.63 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.10 2.44 5.94 -51.93 -0.31 2.13 16 34 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16 37 H 0.08 1.41 6.99 -51.93 -0.36 1.05 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.50 7.62 -51.92 -0.40 0.10 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.11 0.81 6.19 -51.93 -0.32 0.49 16 43 H 0.41 5.97 8.96 -40.82 -0.37 5.60 16 LS Contribution 332.12 15.07 5.00 5.00 Total: -1.00 -32.04 332.12 -7.69 -39.73 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.29 Total: 4.63 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -0.89 Total: 12.84 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.67 Total: -57.76 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.19 Total: -19.84 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.04 -7.69 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.290 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds