Wall clock time and date at job start Tue Mar 31 2020 04:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46783 * 2 1 4 4 C 1.53002 * 109.47337 * 240.00303 * 2 1 3 5 5 C 1.50696 * 109.47370 * 64.99674 * 4 2 1 6 6 H 1.08000 * 119.99757 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99862 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00360 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99944 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47144 * 60.00485 * 9 7 5 11 11 H 1.48494 * 109.47351 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47270 * 300.00794 * 9 7 5 13 13 C 1.52996 * 109.47185 * 119.99736 * 2 1 3 14 14 N 1.46906 * 109.47171 * 182.00637 * 13 2 1 15 15 C 1.46835 * 110.99882 * 176.27171 * 14 13 2 16 16 C 1.53047 * 109.63555 * 173.79355 * 15 14 13 17 17 C 1.53218 * 109.19890 * 59.60970 * 16 15 14 18 18 C 1.52566 * 109.18907 * 303.18403 * 17 16 15 19 19 C 1.46944 * 110.99838 * 52.12492 * 14 13 2 20 20 N 1.46829 * 110.49123 * 293.65717 * 18 17 16 21 21 C 1.34688 * 106.40145 * 241.40846 * 20 18 17 22 22 O 1.21536 * 123.78830 * 180.02562 * 21 20 18 23 23 N 1.33866 * 112.42155 * 0.02562 * 21 20 18 24 24 C 1.34932 * 111.60743 * 359.97438 * 23 21 20 25 25 O 1.21236 * 127.25988 * 180.02562 * 24 23 21 26 26 H 1.09004 * 109.47394 * 54.56339 * 1 2 3 27 27 H 1.09000 * 109.47035 * 174.55938 * 1 2 3 28 28 H 1.08998 * 109.47208 * 294.56360 * 1 2 3 29 29 H 1.08998 * 109.47247 * 185.00083 * 4 2 1 30 30 H 1.09004 * 109.46544 * 304.99539 * 4 2 1 31 31 H 0.96997 * 120.00087 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47268 * 62.00778 * 13 2 1 33 33 H 1.09004 * 109.47351 * 302.00436 * 13 2 1 34 34 H 1.09003 * 109.44852 * 53.74166 * 15 14 13 35 35 H 1.09001 * 109.44747 * 293.84752 * 15 14 13 36 36 H 1.08998 * 109.51518 * 179.52449 * 16 15 14 37 37 H 1.08996 * 109.51650 * 299.68865 * 16 15 14 38 38 H 1.09002 * 109.52341 * 63.09601 * 17 16 15 39 39 H 1.09001 * 109.51797 * 183.26750 * 17 16 15 40 40 H 1.08995 * 109.45680 * 304.90699 * 19 14 13 41 41 H 1.08992 * 109.45722 * 64.84856 * 19 14 13 42 42 H 0.96996 * 126.79553 * 61.41618 * 20 18 17 43 43 H 0.96999 * 124.19842 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9933 -0.4017 -3.7282 8 7 2.6766 -1.5187 -3.8511 9 14 1.4985 0.5626 -5.2497 10 1 2.0896 1.9235 -5.1871 11 1 1.9937 -0.1373 -6.4621 12 1 0.0185 0.6682 -5.3092 13 6 2.0400 -0.7212 1.2492 14 7 3.5082 -0.6793 1.2737 15 6 4.0314 -1.2854 2.5046 16 6 5.5580 -1.3657 2.4296 17 6 6.1292 0.0460 2.2615 18 6 5.5206 0.6884 1.0187 19 6 3.9986 0.6962 1.1101 20 7 5.9606 -0.0162 -0.1920 21 6 6.6360 0.8842 -0.9318 22 8 7.1410 0.6321 -2.0082 23 7 6.6886 2.0879 -0.3484 24 6 6.0474 2.0931 0.8389 25 8 5.9207 3.0277 1.6005 26 1 -0.3634 0.5959 -0.8373 27 1 -0.3633 -1.0230 -0.0974 28 1 -0.3633 0.4272 0.9346 29 1 3.1263 -0.7994 -1.2056 30 1 1.6054 -1.7198 -1.2951 31 1 2.9239 -1.8416 -4.7317 32 1 1.7063 -1.7587 1.2315 33 1 1.6476 -0.2285 2.1389 34 1 3.6204 -2.2885 2.6183 35 1 3.7417 -0.6761 3.3607 36 1 5.9448 -1.8081 3.3476 37 1 5.8489 -1.9802 1.5777 38 1 5.8837 0.6451 3.1383 39 1 7.2119 -0.0102 2.1493 40 1 3.5824 1.1239 0.1980 41 1 3.6894 1.2961 1.9659 42 1 5.7972 -0.9459 -0.4149 43 1 7.1325 2.8606 -0.7316 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602640307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:30 Heat of formation + Delta-G solvation = -77.209160 kcal Electronic energy + Delta-G solvation = -25675.322796 eV Core-core repulsion = 22140.655494 eV Total energy + Delta-G solvation = -3534.667301 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.64822 -40.10555 -39.62559 -37.55575 -36.60158 -34.90818 -34.08254 -32.75220 -31.04287 -29.03325 -27.34224 -25.80630 -25.22267 -23.88744 -23.82982 -22.32611 -20.99790 -20.37222 -19.09258 -18.45008 -17.66849 -17.55461 -17.33139 -16.73379 -16.56787 -16.51714 -15.85940 -15.64491 -15.27305 -15.02464 -14.89490 -14.73487 -14.18958 -13.76959 -13.68549 -13.40829 -13.26230 -12.94490 -12.77504 -12.70657 -12.38394 -12.26182 -12.24131 -11.92946 -11.79421 -11.61932 -11.50658 -11.40541 -11.09218 -10.90221 -10.82470 -10.44122 -10.36786 -9.10419 -8.10733 -6.16932 0.46727 1.36972 1.38476 1.41061 1.45332 1.96924 2.16185 2.43174 2.75826 3.16648 3.23297 3.50656 3.58148 4.01752 4.09005 4.24366 4.28930 4.33756 4.51694 4.54595 4.58235 4.64348 4.77988 4.83987 4.87660 4.92545 5.00372 5.03079 5.06641 5.16084 5.33831 5.39518 5.47321 5.52467 5.67796 5.80645 5.91948 5.97534 6.05851 6.14665 6.29983 6.34488 6.40642 7.01502 7.13620 7.49587 8.99198 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.006443 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.361417 B = 4344.604674 C = 5458.223529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 H 0.050 0.950 4 C 0.051 3.949 5 C -0.529 4.529 6 H 0.050 0.950 7 C 0.006 3.994 8 N -0.923 5.923 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.076 3.924 14 N -0.539 5.539 15 C 0.048 3.952 16 C -0.108 4.108 17 C -0.107 4.107 18 C 0.129 3.871 19 C 0.063 3.937 20 N -0.688 5.688 21 C 0.700 3.300 22 O -0.588 6.588 23 N -0.670 5.670 24 C 0.543 3.457 25 O -0.483 6.483 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.012 0.988 30 H -0.020 1.020 31 H 0.257 0.743 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.445 0.555 43 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.792 2.454 17.528 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.106 4.106 3 H 0.068 0.932 4 C 0.014 3.986 5 C -0.568 4.568 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.564 5.564 9 Si 0.767 3.233 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.052 4.052 14 N -0.264 5.264 15 C -0.079 4.079 16 C -0.146 4.146 17 C -0.146 4.146 18 C 0.038 3.962 19 C -0.066 4.066 20 N -0.352 5.352 21 C 0.399 3.601 22 O -0.464 6.464 23 N -0.341 5.341 24 C 0.329 3.671 25 O -0.354 6.354 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.031 0.969 30 H -0.001 1.001 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.291 0.709 43 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 6.170 2.363 16.920 18.165 hybrid contribution -0.447 0.835 -1.317 1.622 sum 5.723 3.198 15.603 16.924 Atomic orbital electron populations 1.21612 0.95148 1.01041 1.00671 1.21239 0.95714 0.98446 0.95197 0.93157 1.18821 0.95774 0.93179 0.90798 1.21683 1.34039 1.08303 0.92731 0.93183 1.25731 0.95625 0.95977 1.01876 1.70059 1.40077 1.22540 1.23698 0.85878 0.78883 0.78912 0.79635 1.20153 1.21313 1.19237 1.22071 0.85859 1.00895 0.96325 1.61762 1.09420 1.17077 1.38156 1.22275 0.95758 1.00317 0.89529 1.21586 0.94017 0.95067 1.03884 1.21775 1.00994 0.97992 0.93800 1.21183 0.96886 0.88934 0.89239 1.22059 0.90445 0.91754 1.02355 1.45492 1.55674 1.13707 1.20282 1.16084 0.79437 0.81382 0.83159 1.91020 1.53106 1.80791 1.21519 1.44227 1.53846 1.14048 1.21944 1.20675 0.76175 0.90206 0.80075 1.90801 1.56714 1.40535 1.47329 0.94151 0.93754 0.91716 0.96939 1.00126 0.93415 0.90851 0.93450 0.89640 0.93295 0.87651 0.91599 0.88240 0.89556 0.91355 0.91696 0.70867 0.71730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 8.91 71.98 0.64 -3.73 16 2 C -0.09 -3.25 1.85 -10.80 -0.02 -3.27 16 3 H 0.05 1.93 6.09 -2.39 -0.01 1.92 16 4 C 0.05 2.54 4.30 29.85 0.13 2.67 16 5 C -0.53 -29.56 8.48 25.60 0.22 -29.34 16 6 H 0.05 2.73 7.06 -2.91 -0.02 2.71 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.92 -56.65 13.29 21.45 0.28 -56.36 16 9 Si 0.94 45.81 29.54 68.60 2.03 47.84 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 13 C 0.08 2.17 4.54 86.30 0.39 2.56 16 14 N -0.54 -14.29 3.96 -897.24 -3.55 -17.84 16 15 C 0.05 0.89 5.44 86.33 0.47 1.36 16 16 C -0.11 -1.63 5.98 30.68 0.18 -1.45 16 17 C -0.11 -1.78 5.05 30.52 0.15 -1.63 16 18 C 0.13 3.10 0.87 2.60 0.00 3.10 16 19 C 0.06 1.71 4.00 86.12 0.34 2.06 16 20 N -0.69 -20.01 5.55 -442.64 -2.46 -22.47 16 21 C 0.70 23.02 9.00 179.37 1.61 24.63 16 22 O -0.59 -24.56 18.04 -3.83 -0.07 -24.63 16 23 N -0.67 -17.51 5.72 -441.20 -2.52 -20.04 16 24 C 0.54 13.91 7.45 87.76 0.65 14.56 16 25 O -0.48 -13.59 18.02 -2.89 -0.05 -13.65 16 26 H 0.04 1.53 7.12 -2.38 -0.02 1.52 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.01 0.65 7.48 -2.39 -0.02 0.63 16 30 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 31 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.49 8.12 -2.39 -0.02 1.47 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.18 7.50 -2.39 -0.02 1.16 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 2.37 5.79 -2.39 -0.01 2.36 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.45 13.61 8.46 -92.71 -0.78 12.83 16 43 H 0.44 9.47 8.96 -92.71 -0.83 8.64 16 Total: -1.00 -71.51 343.08 -1.68 -73.19 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -0.58 Total: 21.65 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 5.24 Total: 12.31 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -8.24 Total: -116.71 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.12 Total: -38.27 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -71.51 -1.68 -73.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602640307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.021 kcal (2) G-P(sol) polarization free energy of solvation -71.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds