Wall clock time and date at job start Tue Mar 31 2020 04:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47053 * 2 1 4 4 C 1.50695 * 109.47331 * 239.99657 * 2 1 3 5 5 H 1.07998 * 119.99607 * 239.99792 * 4 2 1 6 6 C 1.37872 * 119.99875 * 60.00047 * 4 2 1 7 7 N 1.31508 * 120.00592 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99887 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47124 * 60.00031 * 8 6 4 10 10 H 1.48501 * 109.47424 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47070 * 300.00330 * 8 6 4 12 12 N 1.46899 * 109.46916 * 119.99532 * 2 1 3 13 13 C 1.46894 * 111.00208 * 58.95370 * 12 2 1 14 14 C 1.46907 * 111.00134 * 294.99995 * 12 2 1 15 15 N 1.46498 * 109.47372 * 204.99704 * 14 12 2 16 16 C 1.33786 * 124.17994 * 269.96210 * 15 14 12 17 17 O 1.21535 * 123.77487 * 0.03130 * 16 15 14 18 18 N 1.34874 * 112.49802 * 180.12186 * 16 15 14 19 19 C 1.47306 * 106.43883 * 359.86796 * 18 16 15 20 20 C 1.52999 * 110.60103 * 118.72982 * 19 18 16 21 21 C 1.53008 * 110.59836 * 241.52061 * 19 18 16 22 22 C 1.53000 * 117.49506 * 296.46918 * 21 19 18 23 23 C 1.53002 * 60.02940 * 107.50086 * 22 21 19 24 24 C 1.34769 * 124.17037 * 90.00121 * 15 14 12 25 25 O 1.21239 * 127.16160 * 0.02562 * 24 15 14 26 26 H 1.08996 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47446 * 300.00555 * 1 2 3 28 28 H 1.09005 * 109.46742 * 60.00445 * 1 2 3 29 29 H 0.96994 * 120.00475 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47506 * 296.04851 * 13 12 2 31 31 H 1.09003 * 109.46928 * 56.04783 * 13 12 2 32 32 H 1.08994 * 109.47365 * 176.04443 * 13 12 2 33 33 H 1.09001 * 109.46680 * 84.99979 * 14 12 2 34 34 H 1.08997 * 109.46987 * 325.00207 * 14 12 2 35 35 H 0.97003 * 126.86903 * 179.97438 * 18 16 15 36 36 H 1.08998 * 109.47233 * 182.82936 * 20 19 18 37 37 H 1.08996 * 109.46894 * 302.82461 * 20 19 18 38 38 H 1.08998 * 109.47412 * 62.82571 * 20 19 18 39 39 H 1.08999 * 115.55053 * 150.80261 * 21 19 18 40 40 H 1.09002 * 117.49833 * 215.00191 * 22 21 19 41 41 H 1.09002 * 117.49953 * 0.02562 * 22 21 19 42 42 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 43 43 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1311 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6035 8 14 2.3227 -1.1197 -4.0078 9 1 1.8282 -2.5201 -4.0080 10 1 1.8271 -0.4202 -5.2204 11 1 3.8076 -1.1192 -4.0075 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0759 1.2462 14 6 1.6486 0.0394 2.4181 15 7 2.5923 -0.2870 3.4901 16 6 2.4312 -1.2982 4.3512 17 8 1.4810 -2.0557 4.3337 18 7 3.4399 -1.3826 5.2426 19 6 4.3750 -0.2915 4.9186 20 6 4.5016 0.6766 6.0966 21 6 5.7458 -0.8532 4.5358 22 6 6.5174 -1.6250 5.6082 23 6 5.8834 -2.3743 4.4345 24 6 3.7295 0.3949 3.7311 25 8 4.1485 1.3577 3.1250 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.7089 1.1610 -3.4844 30 1 0.4419 -2.0730 1.3349 31 1 1.8167 -2.5950 0.3321 32 1 1.9616 -2.5866 2.1060 33 1 0.6414 -0.2467 2.7212 34 1 1.6784 1.1111 2.2216 35 1 3.5335 -2.0336 5.9556 36 1 5.1573 1.5021 5.8196 37 1 3.5167 1.0658 6.3544 38 1 4.9209 0.1517 6.9549 39 1 6.3237 -0.2476 3.8377 40 1 7.6030 -1.5272 5.6155 41 1 6.0483 -1.7329 6.5861 42 1 6.5519 -2.7696 3.6697 43 1 4.9972 -2.9746 4.6404 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728902551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:47 Heat of formation + Delta-G solvation = 3.211637 kcal Electronic energy + Delta-G solvation = -25340.994863 eV Core-core repulsion = 21809.814869 eV Total energy + Delta-G solvation = -3531.179994 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.42236 -38.49844 -38.09199 -36.96867 -35.53457 -33.90564 -32.36730 -30.64031 -28.72037 -27.08404 -25.37144 -25.16395 -23.67542 -23.03894 -22.49669 -20.79558 -20.26518 -19.27905 -17.81957 -16.93505 -16.36449 -16.25085 -15.67815 -15.54014 -15.05098 -14.87873 -14.48088 -14.15345 -13.89113 -13.63654 -13.55358 -13.01802 -12.84383 -12.69197 -12.46019 -11.94299 -11.66877 -11.55032 -11.22187 -11.17270 -10.87473 -10.84546 -10.75139 -10.61280 -10.56410 -10.49783 -10.10597 -9.98760 -9.80503 -9.56148 -9.47126 -8.90612 -8.39269 -7.34128 -6.01460 -4.05280 1.81600 2.38516 3.05561 3.24942 3.33821 3.37750 3.41049 3.56383 3.96375 4.18726 4.41996 4.53697 4.70341 4.91173 5.00547 5.04174 5.20857 5.28713 5.31100 5.36467 5.41857 5.65870 5.69272 5.76488 5.78666 5.86114 5.92954 5.99376 6.28841 6.44226 6.64259 6.76294 6.80021 6.91956 7.04582 7.24315 7.39737 7.60582 7.68887 7.79070 8.04264 8.24421 8.35074 8.51421 8.98761 9.59322 11.05758 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.020872 B = 0.004440 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.170934 B = 6304.137906 C = 6612.784073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.217 3.783 3 H 0.043 0.957 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.545 5.545 13 C 0.038 3.962 14 C 0.282 3.718 15 N -0.562 5.562 16 C 0.706 3.294 17 O -0.543 6.543 18 N -0.727 5.727 19 C 0.150 3.850 20 C -0.141 4.141 21 C -0.156 4.156 22 C -0.167 4.167 23 C -0.166 4.166 24 C 0.539 3.461 25 O -0.456 6.456 26 H 0.033 0.967 27 H 0.006 0.994 28 H 0.091 0.909 29 H 0.261 0.739 30 H 0.022 0.978 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.433 0.567 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.966 -2.657 18.705 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.111 3.889 3 H 0.061 0.939 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.270 5.270 13 C -0.110 4.110 14 C 0.071 3.929 15 N -0.309 5.309 16 C 0.407 3.593 17 O -0.416 6.416 18 N -0.392 5.392 19 C 0.059 3.941 20 C -0.199 4.199 21 C -0.176 4.176 22 C -0.204 4.204 23 C -0.204 4.204 24 C 0.324 3.676 25 O -0.324 6.324 26 H 0.053 0.947 27 H 0.025 0.975 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.277 0.723 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.143 0.857 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.016 -2.363 18.055 19.895 hybrid contribution -0.507 -0.752 -0.590 1.082 sum 7.509 -3.115 17.465 19.264 Atomic orbital electron populations 1.22461 1.00371 0.99725 1.00729 1.19330 0.89909 0.94590 0.85050 0.93869 1.21010 1.30841 1.12568 0.89472 0.91958 1.24902 0.95159 0.95105 0.98961 1.69860 1.36844 1.22944 1.23609 0.86554 0.79221 0.79574 0.82008 1.20354 1.21349 1.20247 1.61984 1.60300 1.02824 1.01921 1.22274 0.97275 0.90047 1.01446 1.22061 0.88425 0.99185 0.83220 1.46680 1.24222 1.29373 1.30596 1.15988 0.83007 0.80909 0.79411 1.90991 1.32194 1.44448 1.73993 1.45762 1.23118 1.34737 1.35629 1.20873 0.89868 0.88113 0.95223 1.21930 1.03505 0.98675 0.95815 1.22368 0.94994 0.95964 1.04236 1.22975 0.99797 1.03634 0.94013 1.23048 1.03263 0.93152 1.00900 1.20492 0.80390 0.82905 0.83833 1.90796 1.65449 1.24232 1.51958 0.94744 0.97458 0.89008 0.92870 0.95919 0.90677 0.93623 0.91407 0.88261 0.72294 0.89737 0.91456 0.90560 0.85704 0.88186 0.88688 0.88196 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.34 37.16 0.31 -3.87 16 2 C 0.22 5.49 2.27 -68.87 -0.16 5.34 16 3 H 0.04 1.20 7.93 -51.93 -0.41 0.79 16 4 C -0.50 -13.76 7.88 -34.44 -0.27 -14.03 16 5 H 0.06 1.73 6.77 -52.49 -0.36 1.37 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.55 -12.15 4.84 -240.20 -1.16 -13.31 16 13 C 0.04 0.80 8.49 60.06 0.51 1.31 16 14 C 0.28 5.45 4.55 -63.31 -0.29 5.16 16 15 N -0.56 -9.49 2.82 -123.92 -0.35 -9.84 16 16 C 0.71 10.98 7.92 -87.71 -0.70 10.29 16 17 O -0.54 -10.00 16.07 5.33 0.09 -9.92 16 18 N -0.73 -7.91 4.42 -52.84 -0.23 -8.15 16 19 C 0.15 1.64 1.16 -132.09 -0.15 1.49 16 20 C -0.14 -1.13 8.81 37.16 0.33 -0.80 16 21 C -0.16 -1.55 5.24 -90.58 -0.47 -2.03 16 22 C -0.17 -1.16 9.75 -26.73 -0.26 -1.42 16 23 C -0.17 -1.54 9.87 -26.69 -0.26 -1.81 16 24 C 0.54 8.48 6.98 -10.55 -0.07 8.41 16 25 O -0.46 -8.50 17.76 5.59 0.10 -8.40 16 26 H 0.03 0.81 6.47 -51.93 -0.34 0.47 16 27 H 0.01 0.14 7.13 -51.93 -0.37 -0.23 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.02 0.48 6.43 -51.93 -0.33 0.14 16 31 H 0.07 1.68 6.41 -51.93 -0.33 1.34 16 32 H 0.04 0.93 6.12 -51.93 -0.32 0.61 16 33 H 0.07 1.29 7.23 -51.93 -0.38 0.92 16 34 H 0.10 1.93 7.58 -51.93 -0.39 1.53 16 35 H 0.43 3.50 8.67 -40.82 -0.35 3.15 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.43 7.35 -51.93 -0.38 0.05 16 39 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.52 7.62 -51.93 -0.40 0.12 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 0.96 6.80 -51.93 -0.35 0.61 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -31.49 342.26 -8.66 -40.14 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.28 Total: 2.99 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -1.58 Total: 9.59 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -1.12 Total: -56.04 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.19 Total: -18.32 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.49 -8.66 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.353 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds