Wall clock time and date at job start Tue Mar 31 2020 04:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47028 * 2 1 4 4 C 1.50702 * 109.47090 * 119.99784 * 2 1 3 5 5 H 1.08004 * 119.99889 * 119.99883 * 4 2 1 6 6 C 1.37874 * 120.00029 * 300.00357 * 4 2 1 7 7 N 1.31512 * 120.00021 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00065 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47077 * 89.99578 * 8 6 4 10 10 H 1.48500 * 109.47101 * 210.00003 * 8 6 4 11 11 H 1.48498 * 109.46706 * 329.99905 * 8 6 4 12 12 N 1.46896 * 109.47412 * 239.99848 * 2 1 3 13 13 C 1.46904 * 110.99914 * 69.94666 * 12 2 1 14 14 C 1.46897 * 110.99959 * 305.99907 * 12 2 1 15 15 N 1.46505 * 109.46944 * 209.29485 * 14 12 2 16 16 C 1.33797 * 124.17408 * 270.03586 * 15 14 12 17 17 O 1.21537 * 123.77246 * 359.97438 * 16 15 14 18 18 N 1.34530 * 112.45468 * 179.97438 * 16 15 14 19 19 C 1.47303 * 106.62009 * 0.02562 * 18 16 15 20 20 C 1.52999 * 110.73476 * 118.59037 * 19 18 16 21 21 C 1.53005 * 110.59736 * 241.47288 * 19 18 16 22 22 C 1.53000 * 117.49532 * 294.17195 * 21 19 18 23 23 C 1.52998 * 60.02998 * 107.50208 * 22 21 19 24 24 C 1.34766 * 124.18255 * 89.99657 * 15 14 12 25 25 O 1.21240 * 127.15292 * 0.07110 * 24 15 14 26 26 H 1.09000 * 109.47159 * 185.97469 * 1 2 3 27 27 H 1.08998 * 109.47509 * 305.98053 * 1 2 3 28 28 H 1.09000 * 109.47268 * 65.97579 * 1 2 3 29 29 H 0.97005 * 120.00206 * 180.02562 * 7 6 4 30 30 H 1.08991 * 109.47566 * 296.05324 * 13 12 2 31 31 H 1.09006 * 109.47001 * 56.04633 * 13 12 2 32 32 H 1.09000 * 109.47268 * 176.04653 * 13 12 2 33 33 H 1.09003 * 109.47388 * 89.29413 * 14 12 2 34 34 H 1.09001 * 109.47299 * 329.28897 * 14 12 2 35 35 H 0.96996 * 126.68496 * 180.02562 * 18 16 15 36 36 H 1.08995 * 109.47351 * 182.92274 * 20 19 18 37 37 H 1.09004 * 109.46672 * 302.92178 * 20 19 18 38 38 H 1.08997 * 109.47137 * 62.91650 * 20 19 18 39 39 H 1.09007 * 115.55035 * 148.50447 * 21 19 18 40 40 H 1.09005 * 117.49301 * 215.00329 * 22 21 19 41 41 H 1.08994 * 117.50196 * 359.97438 * 22 21 19 42 42 H 1.09004 * 117.50063 * 107.49907 * 23 22 21 43 43 H 1.08996 * 117.49881 * 252.52119 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.6295 -0.5459 4.4124 10 1 1.3429 -0.9492 5.1120 11 1 2.4857 -2.5661 3.7120 12 7 2.0197 -0.6925 -1.1994 13 6 1.7518 0.0966 -2.4091 14 6 1.4352 -2.0359 -1.3071 15 7 2.3706 -2.9207 -2.0060 16 6 2.3907 -3.0963 -3.3323 17 8 1.6312 -2.5377 -4.0993 18 7 3.3456 -3.9602 -3.7219 19 6 4.0353 -4.4054 -2.4988 20 6 3.8866 -5.9167 -2.3127 21 6 5.5135 -4.0128 -2.5413 22 6 6.3905 -4.6767 -3.6048 23 6 5.9963 -3.2054 -3.7488 24 6 3.3176 -3.6578 -1.3927 25 8 3.5466 -3.7126 -0.2034 26 1 -0.3633 -1.0221 0.1070 27 1 -0.3634 0.6037 0.8316 28 1 -0.3634 0.4184 -0.9386 29 1 0.7094 1.1618 3.4844 30 1 0.6753 0.1941 -2.5485 31 1 2.1954 1.0867 -2.3028 32 1 2.1862 -0.4051 -3.2738 33 1 0.5004 -1.9818 -1.8651 34 1 1.2405 -2.4285 -0.3091 35 1 3.5415 -4.2360 -4.6309 36 1 4.3590 -6.2158 -1.3771 37 1 2.8285 -6.1769 -2.2849 38 1 4.3663 -6.4340 -3.1436 39 1 5.9704 -3.7964 -1.5755 40 1 7.4243 -4.8970 -3.3387 41 1 5.9145 -5.3935 -4.2739 42 1 6.7708 -2.4577 -3.5775 43 1 5.2606 -2.9539 -4.5127 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728902553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:52 Heat of formation + Delta-G solvation = -19.777801 kcal Electronic energy + Delta-G solvation = -25646.192793 eV Core-core repulsion = 22114.015902 eV Total energy + Delta-G solvation = -3532.176891 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.57754 -39.70735 -39.37380 -38.41750 -36.72029 -35.19463 -34.25296 -31.50311 -30.76495 -28.57348 -27.30559 -26.25082 -25.18776 -24.13646 -23.12171 -22.33082 -21.22724 -20.95578 -19.02336 -18.48964 -17.81911 -17.46136 -17.19693 -16.71059 -16.57833 -16.17460 -15.58579 -15.55729 -15.33637 -15.07358 -14.92460 -14.32287 -14.05513 -13.82020 -13.58698 -13.41507 -13.28675 -12.87597 -12.77445 -12.64805 -12.58356 -12.41278 -12.31923 -12.19399 -11.97136 -11.88280 -11.55502 -11.23575 -11.10582 -10.86676 -10.85342 -10.52751 -10.45604 -9.15082 -8.13444 -6.22462 0.65050 1.22447 1.39362 1.40448 1.53092 1.97875 2.13054 2.42333 2.81807 2.94751 3.16061 3.33024 3.40569 3.79394 3.87061 4.03632 4.19987 4.31628 4.34369 4.36245 4.48688 4.53690 4.67344 4.71011 4.73842 4.80130 4.83730 4.84912 4.97175 5.02680 5.06688 5.15669 5.18096 5.28466 5.39372 5.62735 5.75309 5.82752 6.04870 6.13536 6.31647 6.47416 6.57718 6.90342 7.14403 7.46539 8.93026 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017459 B = 0.005580 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.361405 B = 5017.055638 C = 5904.365281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.222 3.778 3 H 0.017 0.983 4 C -0.516 4.516 5 H 0.054 0.946 6 C 0.020 3.980 7 N -0.916 5.916 8 Si 0.951 3.049 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.276 1.276 12 N -0.557 5.557 13 C 0.036 3.964 14 C 0.299 3.701 15 N -0.572 5.572 16 C 0.704 3.296 17 O -0.575 6.575 18 N -0.697 5.697 19 C 0.166 3.834 20 C -0.138 4.138 21 C -0.180 4.180 22 C -0.129 4.129 23 C -0.178 4.178 24 C 0.523 3.477 25 O -0.491 6.491 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.262 0.738 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.450 0.550 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.536 -14.102 -14.718 22.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.116 3.884 3 H 0.034 0.966 4 C -0.554 4.554 5 H 0.072 0.928 6 C -0.179 4.179 7 N -0.556 5.556 8 Si 0.777 3.223 9 H -0.204 1.204 10 H -0.204 1.204 11 H -0.201 1.201 12 N -0.282 5.282 13 C -0.112 4.112 14 C 0.087 3.913 15 N -0.318 5.318 16 C 0.405 3.595 17 O -0.452 6.452 18 N -0.362 5.362 19 C 0.076 3.924 20 C -0.195 4.195 21 C -0.199 4.199 22 C -0.166 4.166 23 C -0.215 4.215 24 C 0.310 3.690 25 O -0.360 6.360 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.298 0.702 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.113 0.887 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.616 -13.711 -14.215 21.547 hybrid contribution -0.768 0.364 0.857 1.207 sum 7.847 -13.348 -13.357 20.449 Atomic orbital electron populations 1.22234 0.99386 1.00006 0.99891 1.19085 0.90511 0.93009 0.85839 0.96553 1.21348 1.30756 1.12509 0.90784 0.92780 1.25546 0.95289 0.95713 1.01401 1.69996 1.37639 1.23865 1.24070 0.85663 0.78151 0.78994 0.79483 1.20380 1.20365 1.20101 1.61783 1.60016 1.02422 1.04016 1.22325 0.98984 0.97939 0.92001 1.21758 0.87300 0.85624 0.96604 1.46744 1.34759 1.41750 1.08545 1.15980 0.81843 0.80118 0.81591 1.90950 1.45040 1.53673 1.55549 1.45498 1.34258 1.46468 1.10015 1.20899 0.92224 0.97702 0.81623 1.22000 1.03666 0.88194 1.05674 1.22288 0.90992 1.09647 0.97007 1.23137 1.00294 0.94620 0.98527 1.23094 1.03457 0.96124 0.98809 1.21450 0.79223 0.78716 0.89594 1.90802 1.65693 1.63357 1.16184 0.95016 0.91624 0.95012 0.92850 0.95544 0.91926 0.91889 0.91467 0.88952 0.70188 0.89768 0.91736 0.86796 0.87608 0.86778 0.85998 0.88670 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.58 8.27 71.98 0.59 -6.99 16 2 C 0.22 11.53 2.29 44.17 0.10 11.63 16 3 H 0.02 0.94 8.02 -2.39 -0.02 0.93 16 4 C -0.52 -29.32 7.59 25.60 0.19 -29.13 16 5 H 0.05 3.23 7.22 -2.91 -0.02 3.21 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.92 -52.97 11.39 21.45 0.24 -52.73 16 8 Si 0.95 45.77 29.54 68.60 2.03 47.80 16 9 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 12 N -0.56 -25.27 4.80 -913.84 -4.39 -29.66 16 13 C 0.04 1.41 9.10 127.69 1.16 2.57 16 14 C 0.30 12.51 4.01 170.81 0.68 13.20 16 15 N -0.57 -20.53 2.85 -783.54 -2.23 -22.76 16 16 C 0.70 21.85 8.15 179.44 1.46 23.32 16 17 O -0.58 -20.80 16.10 -3.83 -0.06 -20.86 16 18 N -0.70 -14.18 4.45 -439.82 -1.96 -16.14 16 19 C 0.17 3.59 1.17 2.99 0.00 3.59 16 20 C -0.14 -2.05 8.79 71.98 0.63 -1.41 16 21 C -0.18 -3.44 5.27 -10.77 -0.06 -3.50 16 22 C -0.13 -1.35 9.75 30.59 0.30 -1.06 16 23 C -0.18 -2.91 9.87 30.62 0.30 -2.61 16 24 C 0.52 17.92 6.98 87.94 0.61 18.53 16 25 O -0.49 -20.85 17.52 -2.91 -0.05 -20.90 16 26 H 0.03 1.48 7.04 -2.39 -0.02 1.47 16 27 H 0.06 3.51 6.25 -2.39 -0.01 3.49 16 28 H 0.03 1.37 6.54 -2.39 -0.02 1.36 16 29 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 30 H 0.03 1.02 6.58 -2.39 -0.02 1.00 16 31 H 0.06 2.40 8.05 -2.38 -0.02 2.38 16 32 H 0.06 2.41 6.25 -2.39 -0.01 2.39 16 33 H 0.07 2.72 7.46 -2.39 -0.02 2.70 16 34 H 0.09 4.34 6.09 -2.39 -0.01 4.32 16 35 H 0.45 5.96 8.57 -92.71 -0.79 5.16 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.11 0.85 7.22 -2.39 -0.02 0.83 16 39 H 0.11 2.48 8.13 -2.38 -0.02 2.46 16 40 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.12 0.68 7.49 -2.39 -0.02 0.66 16 42 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.10 1.62 6.73 -2.39 -0.02 1.61 16 Total: -1.00 -70.58 343.03 0.26 -70.32 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.24 Total: 15.22 kcal Atomic # 6 Polarization: 23.27 SS G_CDS: 6.44 Total: 29.71 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -8.33 Total: -121.29 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -0.11 Total: -41.76 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.58 0.26 -70.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.544 kcal (2) G-P(sol) polarization free energy of solvation -70.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds