Wall clock time and date at job start Tue Mar 31 2020 04:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 5 5 O 1.21283 * 119.99750 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.99928 * 0.28128 * 4 3 2 7 7 H 1.08999 * 112.84824 * 51.41354 * 6 4 3 8 8 C 1.53786 * 113.61124 * 280.21706 * 6 4 3 9 9 C 1.53786 * 87.07629 * 220.01879 * 8 6 4 10 10 C 1.53775 * 87.08286 * 25.43464 * 9 8 6 11 11 H 1.09003 * 113.61713 * 89.11329 * 10 9 8 12 12 C 1.50702 * 113.61500 * 220.02080 * 10 9 8 13 13 N 1.34777 * 119.99293 * 277.49613 * 12 10 9 14 14 O 1.21277 * 120.00494 * 97.49368 * 12 10 9 15 15 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 16 16 C 1.53944 * 113.74505 * 36.66977 * 15 3 2 17 17 N 1.47578 * 86.11817 * 222.04507 * 16 15 3 18 18 C 1.36939 * 134.49387 * 204.63806 * 17 16 15 19 19 H 1.07998 * 119.99788 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99940 * 0.02562 * 18 17 16 21 21 N 1.31624 * 120.00142 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00042 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47208 * 90.00144 * 22 20 18 24 24 H 1.48502 * 109.46907 * 210.00040 * 22 20 18 25 25 H 1.48498 * 109.46789 * 329.99717 * 22 20 18 26 26 C 1.47584 * 91.01332 * 24.64341 * 17 16 15 27 27 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 29 29 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 30 30 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 31 31 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 32 32 H 1.08999 * 113.61448 * 334.56484 * 8 6 4 33 33 H 1.08994 * 113.61040 * 105.47330 * 8 6 4 34 34 H 1.09001 * 113.60930 * 139.98361 * 9 8 6 35 35 H 1.08995 * 113.61394 * 270.79518 * 9 8 6 36 36 H 0.96996 * 120.00674 * 359.97438 * 13 12 10 37 37 H 0.97008 * 119.99605 * 179.97438 * 13 12 10 38 38 H 1.09003 * 112.94194 * 168.40662 * 15 3 2 39 39 H 1.08999 * 113.76739 * 336.35213 * 16 15 3 40 40 H 1.09009 * 113.76548 * 107.74581 * 16 15 3 41 41 H 0.97003 * 119.99914 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.76598 * 221.05899 * 26 17 16 43 43 H 1.09002 * 113.87480 * 89.67138 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2429 2.0167 1.1672 5 8 2.6468 3.1603 1.1671 6 6 1.9977 1.3042 2.4723 7 1 2.4907 0.3335 2.5238 8 6 0.5164 1.2655 2.8840 9 6 0.9912 1.5257 4.3235 10 6 2.2372 2.1854 3.7096 11 1 2.1166 3.2514 3.5165 12 6 3.5140 1.8628 4.4423 13 7 3.8510 2.5578 5.5468 14 8 4.2382 0.9779 4.0382 15 6 2.2625 2.0717 -1.2688 16 6 1.2461 1.7216 -2.3707 17 7 2.4044 1.6722 -3.2838 18 6 2.5697 1.8318 -4.6338 19 1 3.5530 1.7434 -5.0716 20 6 1.4734 2.1071 -5.4395 21 7 0.2749 2.2143 -4.9060 22 14 1.6988 2.3240 -7.2812 23 1 1.5513 1.0095 -7.9562 24 1 0.6718 3.2638 -7.7982 25 1 3.0522 2.8711 -7.5532 26 6 3.3131 1.3818 -2.1577 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 -0.0746 2.0800 2.4653 33 1 0.0508 0.2895 2.7476 34 1 0.3560 2.2197 4.8739 35 1 1.2080 0.6157 4.8829 36 1 3.2721 3.2657 5.8699 37 1 4.6727 2.3499 6.0187 38 1 2.4271 3.1422 -1.1452 39 1 0.7579 0.7576 -2.2277 40 1 0.5451 2.5261 -2.5934 41 1 -0.4911 2.4070 -5.4690 42 1 4.2623 1.9149 -2.2105 43 1 3.4335 0.3183 -1.9510 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951126856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:46 Heat of formation + Delta-G solvation = 6.403315 kcal Electronic energy + Delta-G solvation = -24725.990213 eV Core-core repulsion = 21194.948620 eV Total energy + Delta-G solvation = -3531.041593 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96991 -39.39777 -37.91759 -36.70519 -34.92119 -33.79259 -32.04425 -30.13662 -28.02067 -27.01574 -26.50636 -24.80443 -23.40833 -22.84958 -21.67359 -20.35456 -19.21683 -18.31000 -18.02128 -17.13318 -16.87592 -16.47547 -16.13045 -15.29112 -14.83663 -14.70976 -14.47132 -14.12801 -13.82279 -13.49842 -13.19624 -12.92313 -12.57435 -12.39553 -12.31660 -11.93985 -11.85606 -11.54352 -11.41363 -11.15609 -11.08795 -10.96875 -10.84302 -10.67205 -10.44921 -10.20131 -10.05449 -9.92854 -9.88299 -9.52048 -9.28099 -8.78466 -8.09396 -6.88290 -5.77488 -3.09685 2.47707 2.90607 3.21851 3.39798 3.44261 3.46782 3.49639 4.17398 4.32463 4.46805 4.48996 4.56965 4.88734 5.03143 5.18620 5.25412 5.37703 5.43971 5.46794 5.49843 5.51309 5.62416 5.66588 5.72681 5.77074 5.95579 6.04620 6.10792 6.15521 6.26104 6.44739 6.52745 6.57329 6.65489 6.89859 7.12501 7.21512 7.39727 7.53878 7.85973 7.97306 8.10088 8.53309 9.04339 9.69968 10.58001 11.39746 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.031513 B = 0.003498 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.318258 B = 8002.490356 C = 8384.864122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 N -0.591 5.591 4 C 0.523 3.477 5 O -0.550 6.550 6 C -0.113 4.113 7 H 0.125 0.875 8 C -0.124 4.124 9 C -0.123 4.123 10 C -0.119 4.119 11 H 0.127 0.873 12 C 0.530 3.470 13 N -0.856 5.856 14 O -0.542 6.542 15 C 0.090 3.910 16 C 0.155 3.845 17 N -0.606 5.606 18 C -0.221 4.221 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.107 3.893 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.401 0.599 37 H 0.399 0.601 38 H 0.113 0.887 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.106 -2.678 22.169 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.019 4.019 3 N -0.322 5.322 4 C 0.311 3.689 5 O -0.428 6.428 6 C -0.134 4.134 7 H 0.142 0.858 8 C -0.161 4.161 9 C -0.160 4.160 10 C -0.141 4.141 11 H 0.145 0.855 12 C 0.315 3.685 13 N -0.419 5.419 14 O -0.418 6.418 15 C -0.014 4.014 16 C 0.029 3.971 17 N -0.333 5.333 18 C -0.349 4.349 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.020 4.020 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.229 0.771 37 H 0.229 0.771 38 H 0.131 0.869 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.650 -2.608 21.381 21.549 hybrid contribution 0.206 0.216 -0.746 0.803 sum -0.444 -2.392 20.635 20.778 Atomic orbital electron populations 1.22512 0.95761 1.02208 1.03608 1.21521 0.94721 0.82690 1.02944 1.48119 1.64129 1.13936 1.06019 1.20304 0.77024 0.86493 0.85122 1.90648 1.46537 1.18206 1.87402 1.22667 0.98569 1.00758 0.91421 0.85766 1.22923 0.94371 1.03546 0.95274 1.22825 0.95108 1.00998 0.97116 1.22703 0.92653 1.02837 0.95878 0.85498 1.20486 0.87070 0.80841 0.80062 1.43852 1.27910 1.39927 1.30199 1.90736 1.52909 1.31753 1.66399 1.23995 0.99421 0.97844 0.80108 1.22761 0.91369 0.99416 0.83566 1.45672 1.03566 1.81993 1.02058 1.19004 0.94054 1.41573 0.80249 0.90108 1.24788 0.95241 1.02158 0.98196 1.69817 0.98128 1.54729 1.34109 0.86092 0.77193 0.77506 0.84813 1.21614 1.21605 1.20577 1.22978 0.94747 0.96993 0.87272 0.91942 0.92162 0.90699 0.89833 0.90916 0.89014 0.89615 0.90084 0.89440 0.77052 0.77068 0.86882 0.94387 0.90707 0.93626 0.93597 0.94698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 9.83 37.16 0.37 -1.90 16 2 C 0.10 1.43 5.03 -4.04 -0.02 1.41 16 3 N -0.59 -9.91 2.69 -167.90 -0.45 -10.37 16 4 C 0.52 8.65 7.20 -10.98 -0.08 8.57 16 5 O -0.55 -10.97 15.41 5.55 0.09 -10.89 16 6 C -0.11 -1.37 2.24 -90.96 -0.20 -1.58 16 7 H 0.12 1.55 6.38 -51.93 -0.33 1.21 16 8 C -0.12 -1.10 5.61 -25.91 -0.15 -1.24 16 9 C -0.12 -0.89 7.63 -25.92 -0.20 -1.09 16 10 C -0.12 -1.24 3.45 -90.96 -0.31 -1.56 16 11 H 0.13 1.38 7.47 -51.93 -0.39 0.99 16 12 C 0.53 6.12 7.63 -10.98 -0.08 6.03 16 13 N -0.86 -6.14 8.87 31.22 0.28 -5.86 16 14 O -0.54 -8.60 16.74 5.56 0.09 -8.51 16 15 C 0.09 1.85 4.40 -70.15 -0.31 1.54 16 16 C 0.15 3.64 6.33 -2.98 -0.02 3.62 16 17 N -0.61 -15.88 3.70 -178.09 -0.66 -16.53 16 18 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 19 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -27.23 11.38 55.49 0.63 -26.60 16 22 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 C 0.11 2.34 8.46 -2.97 -0.03 2.31 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.65 4.94 -51.93 -0.26 0.39 16 29 H 0.07 1.14 5.85 -51.93 -0.30 0.84 16 30 H 0.08 1.25 6.36 -51.93 -0.33 0.92 16 31 H 0.07 0.82 6.28 -51.93 -0.33 0.50 16 32 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 33 H 0.09 0.64 7.22 -51.93 -0.37 0.27 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.40 1.66 8.83 -40.82 -0.36 1.30 16 37 H 0.40 2.47 8.93 -40.82 -0.36 2.11 16 38 H 0.11 2.55 7.24 -51.93 -0.38 2.17 16 39 H 0.04 0.87 5.01 -51.93 -0.26 0.61 16 40 H 0.07 1.98 7.15 -51.92 -0.37 1.60 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.04 0.72 6.98 -51.93 -0.36 0.36 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -35.86 339.04 -7.28 -43.15 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.06 Total: 3.85 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -1.29 Total: 9.36 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.20 Total: -59.36 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: 0.18 Total: -19.40 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.86 -7.28 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951126856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.552 kcal (2) G-P(sol) polarization free energy of solvation -35.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds