Wall clock time and date at job start Tue Mar 31 2020 04:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47063 * 2 1 4 4 C 1.34783 * 119.99694 * 89.99955 * 3 2 1 5 5 O 1.21279 * 120.00110 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.99750 * 0.02562 * 4 3 2 7 7 H 1.08997 * 110.29066 * 320.51640 * 6 4 3 8 8 C 1.54661 * 110.18461 * 82.64447 * 6 4 3 9 9 C 1.54634 * 101.68374 * 144.67803 * 8 6 4 10 10 C 1.51282 * 104.19669 * 334.98842 * 9 8 6 11 11 O 1.21278 * 124.94279 * 196.22787 * 10 9 8 12 12 N 1.34414 * 110.11426 * 16.25250 * 10 9 8 13 13 C 1.46506 * 124.34903 * 180.40526 * 12 10 9 14 14 C 1.46493 * 120.00488 * 270.00330 * 3 2 1 15 15 C 1.53949 * 113.74405 * 36.67219 * 14 3 2 16 16 N 1.47578 * 86.11750 * 222.05159 * 15 14 3 17 17 C 1.36944 * 134.48999 * 204.63732 * 16 15 14 18 18 H 1.07995 * 119.99918 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99926 * 0.02562 * 17 16 15 20 20 N 1.31624 * 119.99862 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00056 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47036 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47286 * 119.99616 * 21 19 17 24 24 H 1.48501 * 109.47472 * 240.00224 * 21 19 17 25 25 C 1.47577 * 91.01640 * 24.64103 * 16 15 14 26 26 H 1.09010 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47267 * 299.99161 * 1 2 3 28 28 H 1.09000 * 109.47396 * 60.00227 * 1 2 3 29 29 H 1.09001 * 109.47056 * 240.00093 * 2 1 3 30 30 H 1.09000 * 109.47074 * 120.00675 * 2 1 3 31 31 H 1.08998 * 111.19008 * 26.51032 * 8 6 4 32 32 H 1.09000 * 110.82422 * 262.69089 * 8 6 4 33 33 H 1.09002 * 110.48619 * 216.31103 * 9 8 6 34 34 H 1.08998 * 110.59934 * 93.72297 * 9 8 6 35 35 H 1.09001 * 109.47060 * 0.03021 * 13 12 10 36 36 H 1.09004 * 109.47073 * 120.02510 * 13 12 10 37 37 H 1.09000 * 109.47212 * 240.02593 * 13 12 10 38 38 H 1.08996 * 112.94875 * 168.40453 * 14 3 2 39 39 H 1.09005 * 113.76436 * 336.34880 * 15 14 3 40 40 H 1.08997 * 113.77186 * 107.74617 * 15 14 3 41 41 H 0.97003 * 119.99824 * 180.02562 * 20 19 17 42 42 H 1.09006 * 113.76740 * 221.06118 * 25 16 15 43 43 H 1.08995 * 113.87536 * 89.67361 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0165 1.1673 5 8 2.6476 3.1598 1.1674 6 6 1.9922 1.3058 2.4723 7 1 1.0888 0.6997 2.4052 8 6 3.2074 0.4231 2.8412 9 6 3.2338 0.5544 4.3817 10 6 2.5513 1.8770 4.6530 11 8 2.6089 2.4865 5.6999 12 7 1.8714 2.2781 3.5650 13 6 1.1032 3.5229 3.4827 14 6 2.2624 2.0719 -1.2686 15 6 1.2459 1.7219 -2.3706 16 7 2.4042 1.6726 -3.2837 17 6 2.5694 1.8322 -4.6337 18 1 3.5527 1.7438 -5.0716 19 6 1.4731 2.1077 -5.4394 20 7 0.2746 2.2149 -4.9057 21 14 1.6985 2.3261 -7.2808 22 1 3.1326 2.1572 -7.6274 23 1 0.8923 1.3090 -8.0023 24 1 1.2499 3.6853 -7.6766 25 6 3.3129 1.3820 -2.1577 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.1253 0.8123 2.4008 32 1 3.0404 -0.6113 2.5406 33 1 4.2611 0.5736 4.7454 34 1 2.6809 -0.2623 4.8457 35 1 1.1745 4.0572 4.4301 36 1 1.5050 4.1456 2.6833 37 1 0.0587 3.2921 3.2734 38 1 2.4268 3.1423 -1.1449 39 1 0.7578 0.7578 -2.2277 40 1 0.5449 2.5263 -2.5932 41 1 -0.4915 2.4070 -5.4688 42 1 4.2622 1.9152 -2.2105 43 1 3.4332 0.3186 -1.9511 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951361419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:11 Heat of formation + Delta-G solvation = 3.747473 kcal Electronic energy + Delta-G solvation = -24937.606058 eV Core-core repulsion = 21406.449300 eV Total energy + Delta-G solvation = -3531.156758 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.12441 -39.54734 -37.79606 -36.18803 -35.20422 -32.91632 -32.14663 -30.32545 -28.87132 -27.23939 -26.73087 -24.94091 -23.63599 -23.52217 -22.25019 -20.42449 -19.34185 -18.55779 -17.87296 -16.91248 -16.77300 -16.16949 -15.99969 -15.24920 -14.94110 -14.79013 -14.10101 -14.01712 -13.86540 -13.67207 -13.62789 -13.05972 -12.78833 -12.63554 -12.58313 -12.33597 -12.06447 -11.96030 -11.66750 -11.59422 -11.47158 -11.24062 -10.95476 -10.89482 -10.72857 -10.34852 -10.11913 -10.04805 -9.77778 -9.62031 -8.87945 -8.74075 -8.28645 -6.98338 -5.86153 -3.18893 2.38869 2.52768 2.79472 3.18573 3.34631 3.40342 3.42413 4.04230 4.11563 4.35079 4.41491 4.63376 4.69771 4.94629 5.05869 5.10897 5.23343 5.24392 5.33144 5.39178 5.45523 5.50368 5.53646 5.55404 5.63221 5.75799 5.83542 5.91583 5.97382 6.08560 6.25993 6.28391 6.37277 6.50419 6.70273 6.93059 7.10607 7.24783 7.43926 7.61180 7.88469 7.99426 8.26363 8.95591 9.61487 10.47421 11.31016 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.033797 B = 0.003494 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.265977 B = 8011.030989 C = 8084.587619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.099 3.901 3 N -0.589 5.589 4 C 0.506 3.494 5 O -0.532 6.532 6 C 0.110 3.890 7 H 0.105 0.895 8 C -0.121 4.121 9 C -0.153 4.153 10 C 0.518 3.482 11 O -0.536 6.536 12 N -0.598 5.598 13 C 0.085 3.915 14 C 0.090 3.910 15 C 0.154 3.846 16 N -0.605 5.605 17 C -0.223 4.223 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.108 3.892 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 -7.630 15.543 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.024 4.024 3 N -0.322 5.322 4 C 0.291 3.709 5 O -0.408 6.408 6 C 0.002 3.998 7 H 0.123 0.877 8 C -0.159 4.159 9 C -0.193 4.193 10 C 0.306 3.694 11 O -0.413 6.413 12 N -0.332 5.332 13 C -0.056 4.056 14 C -0.013 4.013 15 C 0.029 3.971 16 N -0.332 5.332 17 C -0.351 4.351 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.216 1.216 25 C -0.019 4.019 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.056 0.944 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.342 -6.537 15.726 17.083 hybrid contribution -0.131 -0.089 -1.254 1.264 sum 1.211 -6.625 14.472 15.962 Atomic orbital electron populations 1.22397 0.95557 1.02428 1.03337 1.21645 0.94884 0.82613 1.03270 1.48204 1.63946 1.14066 1.05949 1.20557 0.78267 0.86921 0.85107 1.90679 1.45488 1.17634 1.87010 1.21813 1.00951 0.90522 0.86529 0.87739 1.22653 0.97544 1.00517 0.95202 1.22356 1.03534 0.96720 0.96657 1.20836 0.78406 0.87195 0.82931 1.90717 1.62716 1.60936 1.26892 1.47840 1.50527 1.21904 1.12909 1.21768 0.94604 0.85031 1.04182 1.24087 0.99651 0.97906 0.79695 1.22766 0.91413 0.99497 0.83473 1.45659 1.03470 1.81966 1.02099 1.19039 0.94109 1.41816 0.80125 0.89989 1.24796 0.95219 1.01949 0.98291 1.69817 0.98165 1.54552 1.34137 0.86020 0.77407 0.77470 0.84689 1.20398 1.21686 1.21602 1.22967 0.94714 0.96936 0.87246 0.91558 0.92975 0.90368 0.89241 0.90861 0.89113 0.88099 0.87618 0.87421 0.90104 0.89804 0.92381 0.86759 0.94360 0.90620 0.93585 0.93534 0.94686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.77 37.16 0.36 -1.53 16 2 C 0.10 1.07 4.89 -4.04 -0.02 1.05 16 3 N -0.59 -8.34 2.69 -167.91 -0.45 -8.79 16 4 C 0.51 7.17 6.54 -10.98 -0.07 7.10 16 5 O -0.53 -9.60 13.96 5.56 0.08 -9.52 16 6 C 0.11 1.15 2.75 -68.07 -0.19 0.96 16 7 H 0.11 0.87 6.17 -51.93 -0.32 0.55 16 8 C -0.12 -0.93 6.17 -25.00 -0.15 -1.09 16 9 C -0.15 -1.22 6.86 -26.74 -0.18 -1.41 16 10 C 0.52 6.62 8.02 -10.86 -0.09 6.53 16 11 O -0.54 -8.81 17.35 5.56 0.10 -8.71 16 12 N -0.60 -7.42 3.00 -173.91 -0.52 -7.95 16 13 C 0.09 1.06 10.49 59.85 0.63 1.69 16 14 C 0.09 1.66 4.40 -70.14 -0.31 1.35 16 15 C 0.15 3.37 6.33 -2.97 -0.02 3.35 16 16 N -0.61 -14.85 3.70 -178.08 -0.66 -15.51 16 17 C -0.22 -6.08 10.70 -15.05 -0.16 -6.24 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -26.31 11.38 55.49 0.63 -25.68 16 21 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.11 2.12 8.46 -2.98 -0.03 2.10 16 26 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.05 0.50 7.19 -51.93 -0.37 0.13 16 28 H 0.08 1.07 5.85 -51.93 -0.30 0.77 16 29 H 0.09 1.08 6.36 -51.93 -0.33 0.75 16 30 H 0.07 0.54 5.29 -51.93 -0.27 0.27 16 31 H 0.09 0.80 7.92 -51.93 -0.41 0.39 16 32 H 0.10 0.47 7.16 -51.93 -0.37 0.10 16 33 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.00 7.53 -51.93 -0.39 0.61 16 36 H 0.08 1.20 6.18 -51.93 -0.32 0.87 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.11 2.36 7.24 -51.93 -0.38 1.98 16 39 H 0.04 0.81 5.01 -51.93 -0.26 0.55 16 40 H 0.08 1.90 7.15 -51.93 -0.37 1.53 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.63 6.98 -51.93 -0.36 0.27 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -34.07 336.72 -7.23 -41.30 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.13 Total: -0.39 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -0.32 Total: 13.61 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -1.00 Total: -57.93 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.17 Total: -18.23 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.07 -7.23 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951361419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.045 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds