Wall clock time and date at job start Tue Mar 31 2020 04:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47149 * 2 1 4 4 N 1.46494 * 109.47138 * 120.00052 * 2 1 3 5 5 C 1.34778 * 120.00044 * 274.99669 * 4 2 1 6 6 O 1.21277 * 120.00226 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00137 * 180.02562 * 5 4 2 8 8 H 1.09000 * 110.88493 * 56.19136 * 7 5 4 9 9 C 1.54861 * 111.03808 * 292.29639 * 7 5 4 10 10 C 1.51282 * 104.20513 * 217.09695 * 9 7 5 11 11 O 1.21284 * 124.94166 * 196.28279 * 10 9 7 12 12 N 1.34415 * 110.11730 * 16.26751 * 10 9 7 13 13 C 1.46506 * 124.35027 * 180.42850 * 12 10 9 14 14 C 1.46760 * 111.30303 * 0.40627 * 12 10 9 15 15 C 1.52997 * 109.47251 * 239.99936 * 2 1 3 16 16 C 1.53949 * 113.74532 * 156.67263 * 15 2 1 17 17 N 1.47580 * 86.11894 * 222.05233 * 16 15 2 18 18 C 1.36935 * 134.49036 * 204.64217 * 17 16 15 19 19 H 1.08002 * 120.00075 * 179.97438 * 18 17 16 20 20 C 1.38815 * 119.99983 * 0.02562 * 18 17 16 21 21 N 1.31617 * 119.99980 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99883 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47286 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47177 * 119.99588 * 22 20 18 25 25 H 1.48499 * 109.47124 * 239.99741 * 22 20 18 26 26 C 1.47576 * 91.01681 * 24.63870 * 17 16 15 27 27 H 1.09000 * 109.47603 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47202 * 300.00036 * 1 2 3 29 29 H 1.09003 * 109.47422 * 59.99726 * 1 2 3 30 30 H 0.97001 * 120.00681 * 95.00332 * 4 2 1 31 31 H 1.08998 * 110.46775 * 98.42598 * 9 7 5 32 32 H 1.08993 * 110.60550 * 335.83751 * 9 7 5 33 33 H 1.09004 * 109.46636 * 269.97667 * 13 12 10 34 34 H 1.09003 * 109.47223 * 29.97171 * 13 12 10 35 35 H 1.08995 * 109.47125 * 149.97612 * 13 12 10 36 36 H 1.09002 * 110.24740 * 101.98470 * 14 12 10 37 37 H 1.09002 * 110.24616 * 223.89995 * 14 12 10 38 38 H 1.09004 * 112.94480 * 288.41119 * 15 2 1 39 39 H 1.09004 * 113.76743 * 336.35156 * 16 15 2 40 40 H 1.09000 * 113.76836 * 107.74420 * 16 15 2 41 41 H 0.96997 * 119.99957 * 180.02562 * 21 20 18 42 42 H 1.09003 * 113.77372 * 221.06233 * 26 17 16 43 43 H 1.08997 * 113.87282 * 89.67325 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1584 2.4117 7 6 2.6500 -0.7285 3.5875 8 1 3.6209 -1.1876 3.4015 9 6 1.6248 -1.7791 4.0810 10 6 1.7125 -1.7034 5.5893 11 8 1.2862 -2.5436 6.3530 12 7 2.3320 -0.5695 5.9601 13 6 2.5916 -0.1858 7.3499 14 6 2.7156 0.2344 4.7937 15 6 2.0400 -0.7212 -1.2492 16 6 3.4666 -0.3145 -1.6608 17 7 2.9583 -0.3119 -3.0463 18 6 3.5328 -0.4677 -4.2795 19 1 2.9222 -0.4226 -5.1692 20 6 4.8997 -0.6846 -4.3860 21 7 5.6437 -0.7400 -3.3017 22 14 5.6832 -0.8978 -6.0683 23 1 4.6380 -0.7934 -7.1180 24 1 6.7021 0.1621 -6.2778 25 1 6.3326 -2.2310 -6.1465 26 6 1.5823 -0.0739 -2.5689 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.2490 -1.6317 1.1526 31 1 1.9009 -2.7742 3.7323 32 1 0.6205 -1.5227 3.7440 33 1 1.7499 0.3932 7.7301 34 1 2.7194 -1.0823 7.9566 35 1 3.4983 0.4173 7.3971 36 1 2.0155 1.0586 4.6569 37 1 3.7289 0.6171 4.9160 38 1 1.8827 -1.7992 -1.2115 39 1 3.7640 0.6701 -1.3001 40 1 4.2152 -1.0832 -1.4688 41 1 6.5989 -0.8912 -3.3762 42 1 0.8264 -0.6506 -3.1020 43 1 1.3243 0.9808 -2.4745 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969791119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:48 Heat of formation + Delta-G solvation = -15.171117 kcal Electronic energy + Delta-G solvation = -23880.630070 eV Core-core repulsion = 20348.652940 eV Total energy + Delta-G solvation = -3531.977130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00942 -39.54741 -38.15029 -36.47346 -34.88545 -33.31861 -32.17654 -30.41005 -27.99674 -27.55276 -27.13845 -24.96684 -24.16166 -23.26541 -21.22382 -20.29627 -19.82163 -19.05903 -17.60757 -17.10657 -16.77742 -16.13591 -15.96984 -15.52505 -15.02834 -14.90461 -14.07389 -14.01806 -13.91130 -13.75379 -13.60275 -13.48004 -12.94433 -12.69562 -12.60567 -12.43454 -12.13087 -11.81390 -11.71603 -11.61897 -11.35858 -11.33347 -10.94601 -10.76139 -10.39218 -10.28103 -9.98519 -9.80217 -9.72272 -9.44009 -9.01657 -8.89941 -8.82836 -6.90266 -5.79644 -3.11746 2.29238 2.52825 2.67110 3.15896 3.36766 3.42332 3.44690 3.95147 4.05869 4.42522 4.50442 4.59087 4.88683 4.94392 5.04125 5.08933 5.21409 5.23051 5.24501 5.29460 5.38965 5.43288 5.50028 5.60782 5.63090 5.75352 5.90020 5.98241 6.15153 6.19052 6.31262 6.36449 6.53195 6.60948 6.74336 6.76109 7.19897 7.32751 7.52825 7.54426 7.86231 7.95834 8.20225 9.02410 9.68406 10.57292 11.37450 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026909 B = 0.002930 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.296519 B = 9552.555756 C = 9979.721438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.711 5.711 5 C 0.526 3.474 6 O -0.539 6.539 7 C -0.126 4.126 8 H 0.120 0.880 9 C -0.143 4.143 10 C 0.519 3.481 11 O -0.533 6.533 12 N -0.624 5.624 13 C 0.096 3.904 14 C 0.116 3.884 15 C -0.147 4.147 16 C 0.170 3.830 17 N -0.613 5.613 18 C -0.222 4.222 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.130 3.870 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.401 0.599 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.253 0.747 42 H 0.044 0.956 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.019 -0.129 17.029 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.107 0.893 4 N -0.361 5.361 5 C 0.311 3.689 6 O -0.416 6.416 7 C -0.148 4.148 8 H 0.138 0.862 9 C -0.184 4.184 10 C 0.307 3.693 11 O -0.410 6.410 12 N -0.358 5.358 13 C -0.046 4.046 14 C -0.007 4.007 15 C -0.167 4.167 16 C 0.045 3.955 17 N -0.339 5.339 18 C -0.350 4.350 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.003 3.997 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.236 0.764 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.168 0.257 17.296 18.724 hybrid contribution 0.773 -0.357 -0.992 1.308 sum -6.395 -0.100 16.304 17.513 Atomic orbital electron populations 1.22136 0.95599 1.01820 1.02150 1.21136 0.93514 0.97614 0.83218 0.89344 1.46073 1.66350 1.14180 1.09515 1.19944 0.77774 0.87074 0.84154 1.90709 1.50316 1.15746 1.84817 1.22308 1.01503 0.97082 0.93892 0.86181 1.22365 1.01419 1.01203 0.93393 1.20781 0.76806 0.80832 0.90882 1.90734 1.49075 1.42235 1.58951 1.48211 1.58820 1.21712 1.07095 1.21558 1.01242 1.01343 0.80424 1.22024 1.02667 0.93734 0.82266 1.23833 1.00954 0.99710 0.92184 1.22268 0.91681 0.98259 0.83296 1.45955 1.02487 1.83251 1.02176 1.19073 0.91098 1.41870 0.82930 0.90218 1.24783 0.95971 1.02428 0.97339 1.69820 1.05108 1.55755 1.26167 0.86056 0.79227 0.77377 0.83155 1.20465 1.21755 1.21703 1.22497 0.89718 0.96756 0.90719 0.92662 0.92807 0.91352 0.76436 0.86949 0.87218 0.92471 0.90638 0.90802 0.88829 0.89585 0.89338 0.95674 0.91023 0.93734 0.93763 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.29 37.16 0.35 -1.57 16 2 C 0.15 2.08 2.42 -67.94 -0.16 1.91 16 3 H 0.09 1.45 7.37 -51.93 -0.38 1.06 16 4 N -0.71 -8.11 5.08 -53.81 -0.27 -8.38 16 5 C 0.53 6.11 7.04 -10.98 -0.08 6.03 16 6 O -0.54 -8.16 15.17 5.56 0.08 -8.08 16 7 C -0.13 -1.06 3.55 -90.01 -0.32 -1.38 16 8 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 9 C -0.14 -1.19 6.41 -26.62 -0.17 -1.36 16 10 C 0.52 5.81 8.02 -10.86 -0.09 5.72 16 11 O -0.53 -7.94 17.59 5.55 0.10 -7.84 16 12 N -0.62 -5.82 3.33 -180.28 -0.60 -6.42 16 13 C 0.10 0.69 10.96 59.85 0.66 1.35 16 14 C 0.12 0.99 6.70 -3.12 -0.02 0.97 16 15 C -0.15 -2.44 3.50 -89.69 -0.31 -2.76 16 16 C 0.17 3.79 7.07 -2.97 -0.02 3.77 16 17 N -0.61 -15.29 3.70 -177.88 -0.66 -15.95 16 18 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -26.84 11.38 55.49 0.63 -26.21 16 22 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.13 2.49 7.56 -2.97 -0.02 2.47 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.82 7.43 -51.93 -0.39 0.43 16 30 H 0.40 3.71 8.60 -40.82 -0.35 3.36 16 31 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.11 0.90 7.90 -51.93 -0.41 0.49 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.59 7.93 -51.93 -0.41 0.17 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.92 6.96 -51.93 -0.36 0.56 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.03 0.60 7.96 -51.93 -0.41 0.18 16 40 H 0.07 1.76 7.15 -51.93 -0.37 1.39 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.65 8.06 -51.93 -0.42 0.23 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -34.76 354.63 -7.71 -42.47 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.86 Total: -0.31 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.45 Total: 8.50 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.90 Total: -56.95 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.18 Total: -15.92 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.76 -7.71 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969791119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.300 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds