Wall clock time and date at job start Tue Mar 31 2020 04:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46823 * 2 1 4 4 N 1.46504 * 109.46904 * 239.99984 * 2 1 3 5 5 C 1.34770 * 120.00148 * 85.00149 * 4 2 1 6 6 O 1.21287 * 119.99917 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99938 * 179.97438 * 5 4 2 8 8 H 1.09009 * 110.85085 * 59.30352 * 7 5 4 9 9 C 1.54627 * 110.97253 * 295.51089 * 7 5 4 10 10 C 1.51281 * 104.19314 * 266.67627 * 9 7 5 11 11 O 1.21284 * 124.93480 * 163.70845 * 10 9 7 12 12 N 1.34420 * 110.12049 * 343.74935 * 10 9 7 13 13 C 1.46496 * 124.35184 * 179.58651 * 12 10 9 14 14 C 1.46868 * 111.30666 * 359.58670 * 12 10 9 15 15 C 1.53002 * 109.46903 * 119.99644 * 2 1 3 16 16 C 1.53940 * 113.74105 * 282.19988 * 15 2 1 17 17 N 1.47818 * 86.03496 * 222.08536 * 16 15 2 18 18 C 1.36938 * 134.45557 * 204.64608 * 17 16 15 19 19 H 1.07995 * 119.99542 * 182.58869 * 18 17 16 20 20 C 1.38812 * 120.00089 * 2.58748 * 18 17 16 21 21 N 1.31618 * 119.99998 * 353.41667 * 20 18 17 22 22 Si 1.86796 * 120.00045 * 173.41553 * 20 18 17 23 23 H 1.48503 * 109.47245 * 94.96917 * 22 20 18 24 24 H 1.48493 * 109.47297 * 214.97198 * 22 20 18 25 25 H 1.48503 * 109.47096 * 334.97509 * 22 20 18 26 26 C 1.47577 * 91.04782 * 24.55071 * 17 16 15 27 27 H 1.09000 * 109.47235 * 304.49160 * 1 2 3 28 28 H 1.09004 * 109.47362 * 64.49128 * 1 2 3 29 29 H 1.09001 * 109.47255 * 184.48539 * 1 2 3 30 30 H 0.97005 * 119.99180 * 264.99576 * 4 2 1 31 31 H 1.08998 * 110.48298 * 25.35757 * 9 7 5 32 32 H 1.08995 * 110.48432 * 147.86578 * 9 7 5 33 33 H 1.09006 * 109.47075 * 0.02562 * 13 12 10 34 34 H 1.08999 * 109.47037 * 120.02359 * 13 12 10 35 35 H 1.08998 * 109.47324 * 240.02606 * 13 12 10 36 36 H 1.09001 * 110.25769 * 258.04459 * 14 12 10 37 37 H 1.08993 * 110.27838 * 136.01340 * 14 12 10 38 38 H 1.08997 * 112.94240 * 53.79273 * 15 2 1 39 39 H 1.08994 * 113.77331 * 336.34941 * 16 15 2 40 40 H 1.09002 * 113.76939 * 107.75183 * 16 15 2 41 41 H 0.97002 * 119.99947 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.76617 * 221.14819 * 26 17 16 43 43 H 1.09003 * 113.87573 * 89.76994 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6499 -0.7287 -3.5875 8 1 1.9996 -1.5645 -3.8460 9 6 4.1094 -1.2018 -3.3957 10 6 4.9426 -0.0750 -3.9656 11 8 6.1279 0.0833 -3.7635 12 7 4.1778 0.7257 -4.7279 13 6 4.6671 1.9184 -5.4236 14 6 2.7887 0.2512 -4.7736 15 6 2.0400 -0.7212 1.2493 16 6 1.9658 0.1299 2.5299 17 7 3.3032 -0.4144 2.8463 18 6 4.0102 -0.6097 4.0026 19 1 5.0166 -0.9993 3.9609 20 6 3.4334 -0.3068 5.2284 21 7 2.2600 0.2876 5.2746 22 14 4.3225 -0.7428 6.8123 23 1 5.0966 0.4330 7.2852 24 1 3.3300 -1.1306 7.8464 25 1 5.2480 -1.8774 6.5642 26 6 3.5692 -0.6650 1.4165 27 1 -0.3634 0.5819 0.8470 28 1 -0.3634 0.4426 -0.9275 29 1 -0.3634 -1.0245 0.0804 30 1 2.2490 -1.6318 -1.1525 31 1 4.3292 -1.3412 -2.3372 32 1 4.2863 -2.1258 -3.9460 33 1 5.7314 2.0444 -5.2243 34 1 4.5094 1.8037 -6.4960 35 1 4.1247 2.7945 -5.0682 36 1 2.5971 -0.2655 -5.7141 37 1 2.0998 1.0874 -4.6547 38 1 1.6226 -1.7217 1.3625 39 1 1.9613 1.2039 2.3441 40 1 1.1863 -0.1864 3.2231 41 1 1.8567 0.4990 6.1311 42 1 4.0676 -1.6147 1.2223 43 1 4.0371 0.1739 0.9011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969791121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:54 Heat of formation + Delta-G solvation = -41.374516 kcal Electronic energy + Delta-G solvation = -24295.421662 eV Core-core repulsion = 20762.308268 eV Total energy + Delta-G solvation = -3533.113395 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.91374 -40.58149 -39.53174 -37.34342 -36.13778 -34.30350 -33.87714 -31.64416 -29.34247 -28.68930 -27.76779 -26.58728 -25.76914 -24.41470 -22.52492 -21.32687 -20.67824 -20.48485 -18.83148 -18.55122 -17.74568 -17.28419 -16.83820 -16.74714 -16.47106 -15.86714 -15.78186 -15.41175 -14.87799 -14.77827 -14.59994 -14.56579 -14.06018 -13.58509 -13.40835 -13.29089 -13.20286 -13.10442 -13.07241 -12.97596 -12.80421 -12.66358 -12.42695 -12.33970 -12.03774 -11.80137 -11.56619 -11.25187 -10.97902 -10.83370 -10.73738 -10.01083 -9.73010 -8.94765 -7.92958 -5.25456 1.44693 1.46139 1.50075 1.55813 1.64238 2.07545 2.19873 2.46375 3.28203 3.29133 3.36890 3.38936 3.61192 3.81566 3.97667 3.98137 4.28004 4.34286 4.41004 4.48362 4.48832 4.58556 4.67874 4.73496 4.75984 4.81520 4.85006 4.85753 4.88565 4.92275 4.97564 5.12913 5.23609 5.33493 5.50811 5.52627 5.57704 5.65331 5.92318 6.08510 6.64024 6.90618 7.09482 7.32263 7.59098 8.54915 9.24444 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.003456 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.143018 B = 8098.793124 C = 8867.612970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.162 3.838 3 H 0.052 0.948 4 N -0.705 5.705 5 C 0.512 3.488 6 O -0.581 6.581 7 C -0.111 4.111 8 H 0.180 0.820 9 C -0.138 4.138 10 C 0.496 3.504 11 O -0.590 6.590 12 N -0.623 5.623 13 C 0.089 3.911 14 C 0.113 3.887 15 C -0.105 4.105 16 C 0.169 3.831 17 N -0.644 5.644 18 C -0.240 4.240 19 H 0.081 0.919 20 C -0.065 4.065 21 N -0.952 5.952 22 Si 0.979 3.021 23 H -0.291 1.291 24 H -0.290 1.290 25 H -0.266 1.266 26 C 0.126 3.874 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.417 0.583 31 H 0.102 0.898 32 H 0.156 0.844 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.006 0.994 40 H 0.047 0.953 41 H 0.249 0.751 42 H 0.064 0.936 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 -6.565 -24.561 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.056 3.944 3 H 0.070 0.930 4 N -0.356 5.356 5 C 0.299 3.701 6 O -0.460 6.460 7 C -0.132 4.132 8 H 0.198 0.802 9 C -0.178 4.178 10 C 0.285 3.715 11 O -0.471 6.471 12 N -0.356 5.356 13 C -0.053 4.053 14 C -0.009 4.009 15 C -0.125 4.125 16 C 0.043 3.957 17 N -0.370 5.370 18 C -0.368 4.368 19 H 0.099 0.901 20 C -0.258 4.258 21 N -0.601 5.601 22 Si 0.807 3.193 23 H -0.218 1.218 24 H -0.216 1.216 25 H -0.191 1.191 26 C 0.001 3.999 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.254 0.746 31 H 0.121 0.879 32 H 0.174 0.826 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.140 0.860 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.024 0.976 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.155 -5.578 -24.209 25.188 hybrid contribution 0.758 0.403 1.481 1.712 sum -3.397 -5.174 -22.728 23.556 Atomic orbital electron populations 1.22016 0.93698 1.03188 1.01783 1.20704 0.94911 0.95525 0.83251 0.92960 1.45890 1.66292 1.14810 1.08605 1.20969 0.76785 0.86854 0.85444 1.90706 1.51979 1.17866 1.85476 1.22445 0.97941 1.00853 0.91923 0.80235 1.22432 0.91786 0.98760 1.04779 1.21656 0.86791 0.84896 0.78131 1.90704 1.17227 1.76139 1.63049 1.48372 1.11535 1.26946 1.48761 1.21651 0.99881 0.85965 0.97786 1.22289 0.81324 0.98537 0.98750 1.23434 0.95522 1.00520 0.93016 1.22147 0.88188 0.93584 0.91750 1.46506 1.17051 1.72290 1.01160 1.19446 0.97321 1.36036 0.84045 0.90111 1.25627 0.98303 1.01251 1.00641 1.70010 1.18728 1.46862 1.24504 0.85066 0.77306 0.77913 0.79059 1.21819 1.21622 1.19054 1.22663 0.95214 0.98199 0.83808 0.92475 0.92469 0.90357 0.74579 0.87946 0.82592 0.91989 0.88995 0.91858 0.85957 0.89694 0.87061 0.97581 0.93478 0.94171 0.91795 0.95968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.43 71.98 0.68 -2.98 16 2 C 0.16 4.57 2.28 44.99 0.10 4.67 16 3 H 0.05 1.87 7.49 -2.39 -0.02 1.86 16 4 N -0.70 -14.23 4.76 -442.51 -2.11 -16.33 16 5 C 0.51 10.84 7.09 87.66 0.62 11.46 16 6 O -0.58 -17.88 15.18 -3.05 -0.05 -17.92 16 7 C -0.11 -1.19 3.54 -10.48 -0.04 -1.23 16 8 H 0.18 0.12 8.14 -2.38 -0.02 0.10 16 9 C -0.14 -1.87 6.40 30.59 0.20 -1.68 16 10 C 0.50 12.12 8.02 87.90 0.71 12.82 16 11 O -0.59 -20.58 17.35 -3.04 -0.05 -20.63 16 12 N -0.62 -12.17 3.34 -842.65 -2.81 -14.98 16 13 C 0.09 1.54 11.14 127.77 1.42 2.97 16 14 C 0.11 1.37 6.71 86.81 0.58 1.95 16 15 C -0.11 -3.55 3.35 -10.14 -0.03 -3.58 16 16 C 0.17 8.03 7.03 86.44 0.61 8.64 16 17 N -0.64 -33.59 3.70 -716.18 -2.65 -36.24 16 18 C -0.24 -13.81 10.69 84.03 0.90 -12.91 16 19 H 0.08 4.47 7.84 -2.91 -0.02 4.44 16 20 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 21 N -0.95 -58.17 11.43 21.65 0.25 -57.92 16 22 Si 0.98 46.36 29.56 68.60 2.03 48.39 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 26 C 0.13 5.01 8.38 86.48 0.72 5.73 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.42 5.62 8.60 -92.70 -0.80 4.83 16 31 H 0.10 1.62 7.75 -2.39 -0.02 1.60 16 32 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.32 7.53 -2.38 -0.02 1.30 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.12 0.52 8.14 -2.39 -0.02 0.51 16 37 H 0.08 1.34 6.98 -2.39 -0.02 1.32 16 38 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.01 0.32 8.04 -2.39 -0.02 0.30 16 40 H 0.05 2.46 7.20 -2.39 -0.02 2.45 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.02 0.94 8.10 -2.39 -0.02 0.92 16 Total: -1.00 -85.35 355.46 1.75 -83.60 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.21 Total: 9.49 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 6.94 Total: 22.55 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -7.32 Total: -125.47 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -0.10 Total: -38.55 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -85.35 1.75 -83.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969791121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.225 kcal (2) G-P(sol) polarization free energy of solvation -85.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds